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Query: IDP00831 gene: sdaAB; L-serine dehydratase, iron-sulfur-dependent, beta subunit SACOL2545 [Staphylococcus aureus subsp. aureus COL], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKSYDYQSAFDIIGPVMMGPSSSHTAGAVKIGNSARAILGDIPKNIEIHYYESFAQTHQGHGTDVAIVGGAMGYSTFDNRIKSSLEIAADDGIKIDIIEEEGDSIGQHPNCAYIKSSRNDGRYIEIIGISIGGGTIKIKGIHINGLEVDLNHGLPILVVDGNMTKAQVNHFINDINDMKLDCKDEFIKIDEDKCLVVIPLNKAISESTLNTIKEKYSDVNVSYINLast
1 -106.000IDP00831 gene: sdaAB; L-serine dehydratase, iron-sulfur-dependent, beta subunit SACOL2545 [Staphylococcus aureus subsp. aureus COL]  ali  100  1MAKSYDYQSAFDIIGPVMMGPSSSHTAGAVKIGNSARAILGDIPKNIEIHYYESFAQTHQGHGTDVAIVGGAMGYSTFDNRIKSSLEIAADDGIKIDIIEEEGDSIGQHPNCAYIKSSRNDGRYIEIIGISIGGGTIKIKGIHINGLEVDLNHGLPILVVDGNMTKAQVNHFINDINDMKLDCKDEFIKIDEDKCLVVIPLNKAISESTLNTIKEKYSDVNVSYIN 226
2 -87.200IDP04420 gene: sdhB-1; l-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA3308 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  33  11.KKVVKYKSCFDVIGPIMIGPSSSHTAGALSIGTVANKLFQGLPKKVVVTYYESFAETHKGHGTDFAIIAGILGFAADDSKVPDAIKIAESKGIDITFIEKSGDSPAGHPNTADVYVEDDSRS-IRTMGISVGGGLIEVKHVEIDGFSLELQGP-LPVVIAISERADFEFVLRRIFKQYDVEINNFHSLKDKTKYLYAFALDSLLPGNAQKELGNLSNIANLIIL. 232
3 -32.900IDP01041 gene: sdaB; L-serine dehydratase/L-threonine deaminase 2 STM2971 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  21  1......MISVFD-IFKIGIGPSSSHTVGPMKAGKQFTDDLIARVTRVVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDAIPSFIQDVNTHGRLMNFHADNLSLHENGMRITALAGDKVLYSQTYYSIGGGFIVDE--EHFGLTNSEPVNVPYPYKTAADLQRHCQETGLSLSGLMMQNELALHSKEAQHFARVWEVMRSGIERGITTEGVLPGKLRVP... 237
4 -26.900IDP02466 L-serine dehydratase [Yersinia pestis CO92] YPO1771 [Yersinia pestis CO92]  ali follow..  23  1......MISVFD-MFKIGIGPSSSHTVGPMKAGKQFVDLLITEITRVAVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDSIPAFIRDVELRQKLMVFRSDNLPLHENGMQIHAFAGDEKVLSKTYYSIGGGFIVDE--ENFGKASVNDVSVPYPFNSAAEILANCEQTGLSISGMVMQNELAMHSKEESYFTAIWQTMRACIDRGLNTEGVLPGPLRVP... 237
5 -10.200IDP90778 gene: ilvH; acetolactate synthase 3 regulatory subunit [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0575 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  11  3...........................................................................................................................................................RVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFSRININERTFEQIVKQLHKLIPTYKVIESE 77
6 -9.620IDP04318 gene: ilvH; acetolactate synthase isozyme III small subunit [Yersinia pestis CO92] YPO0540 [Yersinia pestis CO92]  ali follow..  10  2.........................................................................................................................................................RRRILSVLLENESGALSRVVGLFSQRGYNIESLTVAPTDDPTLSRMTIDAKVLEQIEKQLHKLVDVLRVSELV 78
7 -5.370IDP91783 gene: ant4`-IIb; aminoglycoside nucleotidyltransferase [Pseudomonas aeruginosa] AAM76670 [Pseudomonas aeruginosa]  ali follow..  12  5...............................IARWVDRLREEYADAVAILLKGSYARGDAATWSDIDFD--VLVSTQDVEDYRTWIEPVGDRLVHISAAVEWVTG......................................................................................................................... 76
8 -4.600IDP93848 lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005557 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  10  78LVTHLQQTGRFNVLERTNMEELKNEAAISGKSQQLKG---------ATYVVTGDVTEFGRKETGDRQLFGILGRGKSQVAYAKVNLNIVNVNTSEV.................................................................................................................................. 164
9 -4.440IDP05722 gene: tyrA; prephenate dehydrogenase [Bacillus anthracis str. Ames] BA_2954 [Bacillus anthracis str. Ames]  ali follow..  11  122FSKEISFIGGHPMAGSHKTGPMHHVPNEHVEELKDWLKGTGSHFLVLNTEEHDYVTGSHFPHLIAAGLVKQVEKHAGDNPLFKDITRIASSS--NREHLMVLLKEWISEMEDLYDTVSSGDAGEIQNYFADA-----KEYRDSLPVRKRGAIPAYHDLYVDVLDKVGALAHVTSILAREEISITNLQILEAREGLLGVLRISFQREEDRMKAKLALGE........ 369
10 -4.360IDP90772 gene: pheA; chorismate mutase/prephenate dehydratase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0316 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  7  183..................IKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTANAAYLASQDKYAAAIC---------------SRIAAKLYNVPV-----FDKIEDNAANKTRFLILSDIKNPKM-------------------------PNCKTSILAHTAHKPGGLSFLLEQFKKENINLTKLEVKSKEFLHSFYIDFEGHIDDENVKKA--LKDIQEIVWL. 346
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.