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Query: IDP00877 gene: ygeA; putative racemase STM3015 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTIGLLGGMSWESTIPYYRLINEGIKQQLGGLHSASLLLHSVDFHDIEVCQRRDEWDKAGDILAQAAHGLQQAGAEGIVLCTNTMHKIAHVIESRCSLPFLHIADATGRAIARQGLHRVALLGTRYTMEQDFYRGRLEQQFAIETIVPEADDRARINQVIFDELCQGTFTDASRHYYLQVIEQLAAQGAQGVIFGCTEIGLLVPQTQSALPVFDTTAIHAADAVSFMLSSSAPELast
1 -99.200IDP00877 gene: ygeA; putative racemase STM3015 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MKTIGLLGGMSWESTIPYYRLINEGIKQQLGGLHSASLLLHSVDFHDIEVCQRRDEWDKAGDILAQAAHGLQQAGAEGIVLCTNTMHKIAHVIESRCSLPFLHIADATGRAIARQGLHRVALLGTRYTMEQDFYRGRLEQQFAIETIVPEADDRARINQVIFDELCQGTFTDASRHYYLQVIEQLAAQGAQGVIFGCTEIGLLVPQTQSALPVFDTTAIHAADAVSFMLSSSAPE 235
2 -95.700IDP04122 putative aspartate/glutamate racemase [Yersinia pestis CO92] YPO2758 [Yersinia pestis CO92]  ali follow..  57  2MKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGDWQTAAQLLSNAAISLKHAGAEVIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGIDKIGLLGTRYTMEQGFYRGRLTEKHGIEVITPDDTDREAVNRIIYEELCLGIISETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQDASVPVFDTTAIHASAAADYALQ..... 231
3 -80.500IDP02135 putative aspartate racemase [Salmonella typhimurium LT2] STM4510 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  28  3.HTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLL-SGGPSPYRYLERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISILDATLGDIPPSA-RHVGLLATNATLATGLYQKKA-LARGLTLIQPEDAGQALVMQAIYTLKRGD--KTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHEIACPMIDSTASLVRAAIRWYESWPD.. 231
4 -24.500IDP00347 gene: racE; hypothetical protein lmo1237 lmo1237 [Listeria monocytogenes EGD-e]  ali follow..  15  3.QAIGFVGGLT----------VVREVLKQLPHEQV-YYLGDTARCP-------PRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAALYDIREKLDIPVIGVIQPGSRALKATRNNKIGVLGTLGTVESMAYPTALKG------LNRRVEVDSLACPKFVSVVESGEYKAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENGVAVINSGEETASEVSALLDYHN... 222
5 -24.400IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames]  ali follow..  14  8.SVIGVVGGLT----------VASEIIRQLPKESI-CYIGDNERCP-------PRSVEEVQSFVFEMVEFLKQFPLKALVVACNTAAAALAALQEALSIPVIGVIHPGARAIKVTKKGKIGVIGTVGTIQSNMYEKALHE------LDTYLKVHSHACPTLATVVENRLEDAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKDVTIISSAEETAIELSTILQHKG... 227
6 -24.400IDP05326 gene: murI; glutamate racemase [Clostridium difficile 630] CD3562 [Peptoclostridium difficile 630]  ali follow..  15  4.KPIGVLGGLT----------VLKEIMKILPNEDI-IYFGDTARIP-------SRSKETIIKYTFQAINFLKTKGVKAIVIACNTATARLKEAQEKYDIPIIGVIEAGARAVSSTKNKIVGIIGTEGTISSKAYNLEISK------IDESIEIVNKACPLFVPIVEEGWANEVAKLTAKIYLQELKEKNIDSLVLGCTHYPILKRTIGEHIKLVNPAKETAKDLKKILEVQN... 223
7 -24.300IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames]  ali follow..  14  5.RAIGVVGGLT----------VAKELIRQLPKERI-IYLGDTARCP-------PRSREEVRQFTWEMTEHLLDLNIKMLVIACNTATAVLEEMQKQLPIPVVGVIHPGSRALKVTNTYHVGIIGTIGTVKSGAYEEALKS------INNRVMVESLACPPFVELVESGNFEEMAYEVVRETLQPLKNTDIDTLILGCTHYPILGPVIKQKVQLISSGDETAREVSTILYHSK... 224
8 -24.200IDP00328 gene: murI; glutamate racemase Cj1652c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  3...IGVVGGLS----------VLKSLYEARLFDEI-IYYGDTARVP-------VKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYLDALRAKAHFPVYGVIDAGVEATIKDKNKEILVIATKATIKSEEYQKRLLSQGYTNIN-------ALATGLFVPMVEEGIFEDFLQSAMEYYFKNI--TTPDALILACTHFPLLGRSLSKKTKLIHSGDAIVEFLKERENIDLKNH 222
9 -23.700IDP06272 glutamate racemase [Streptococcus pneumoniae TIGR4] NP_346313 [Streptococcus pneumoniae TIGR4]  ali follow..  16  4.RPIGFVGGLT----------VVRELMRQLPHEEI-VYIGDSARAP-------PRPAEQIREYTWQLVNFLLTKDVKMIVIACNTATAVWEEIKAQLDIPVLGVILPGASAIKSSQGGKIGVIGTPMTVQSDIYRQKIHD------LDPDLQVESLACPKFAPLVESGALSTSVTKKVVYETLRPLVGKVDSLILGCTHYPLLRPIIQNKVQLIDSGAECVRDISVLLNYFE... 222
10 -23.500IDP00335 gene: murI; glutamate racemase FTT1197c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  13  5.RPIGVIGGLT----------IVKNLMSILPNEDI-IYFGDIARIP-------TKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIKDIVQEIAAIPVIDVITAGVSLVDNLN--TVGVIATPATINSNAYALQIHK------KNPNIEVYSNPCGLFVSMIEEGFVSHIVELVAKEYLSYFHDKNIQALILGCTHYPIIKEAKILDVKLIDPSLQASKMLYSLLFENK... 220
11 -23.400IDP01362 glutamate racemase VC0158 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  7.PRVLIVGGLS----------VYREIEARLPQLNY-IYLFDNAAYP-------ELTQETLIARVDTLVTRMEQERIDLVVIACNTASTILPVLRAKLTIPVVGVVPAIKPASLIAS-KAIGLIATPATVKRQYTQELIRD------FSANKNVELLGSTRLVNMAEEKLRGKPLDLEELASILQPLKNTIDVAVLGCTHFPLIKEEIQQQVQLIDSGLAIARRVQELLGIEQ... 224
12 -23.100IDP00597 gene: murI; glutamate racemase YPO3909 [Yersinia pestis CO92]  ali follow..  15  26.PTALIVGGLS----------VYQEIRQLLPDLHY-IYAFDNVAFP-------EKSGEFIVERVLEIVTAVQRHPLAIVVIACNTASTVLPALRERFAFPVVGVVPAIKPAVRLTRNGVVGLLATRATVHASYTLDLIAR------FATDCKIELLGSSELVEVAETKLHGGVPLEVLKKILHPWMREPPDTIVLGCTHFPLLTEELAQGTRMVDSGAAIARRTAWLISSQE... 247
13 -21.200IDP00309 gene: murI; glutamate racemase CBU_0298 [Coxiella burnetii RSA 493]  ali follow..  15  5.RPIGVMGGLT----------VLRELVNHLPNESY-IYLGDTARLP-------TKSPETVSRYATQMASILIAQNIKLLVVACNTASTALPQLQQQFHIPIIGVVEPGARAVVATKNNKVALLATETTIQSGIYQNTLRA------LSPQIEITTQTCGLFVALAEEGCTNEIALLVAKKYLEPIINHQCDSVILGCTHFPVLMEPLAAQINIINSAKATATEVQSILQKNN... 227

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24