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Query: IDP00931 gene: ybdR; putative dehydrogenase STM0615 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKALTYHGPHHVKVENVPDPGIEQPDDIILRVTATAICGSDLHLYRGKIPQVKHGDIFGHEFMGEVVETGHDVKNIRKGDRVVIPFVIACGDCFFCRLQQYSACENTNDGHGAAMNKKQIPPPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLLSDDKALFLSDILPTAWQAAKNAQIQQGFSVAVFGAGPVGLLTIACARLLGAEQIFVVDHHAWRLRFAEERYGAIPINFDDENDPAEKIIEQTAGHRGVDAVIDAVGFEAKGSLTETVLTNLKLEGSSGKALRQCIAAVRRGGVVSVPGVYAGFIHGFLFGDAFDKGLTFKMGQTHVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGATSAQAAQKQATGVVNPMPGGVVLast
1 -107.000IDP00931 gene: ybdR; putative dehydrogenase STM0615 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MKALTYHGPHHVKVENVPDPGIEQPDDIILRVTATAICGSDLHLYRGKIPQVKHGDIFGHEFMGEVVETGHDVKNIRKGDRVVIPFVIACGDCFFCRLQQYSACENTNDGHGAAMNKKQIPPPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLLSDDKALFLSDILPTAWQAAKNAQIQQGFSVAVFGAGPVGLLTIACARLLGAEQIFVVDHHAWRLRFAEERYGAIPINFDDENDPAEKIIEQTAGHRGVDAVIDAVGFEAKGSLTETVLTNLKLEGSSGKALRQCIAAVRRGGVVSVPGVYAGFIHGFLFGDAFDKGLTFKMGQTHVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGATSAQAAQKQATGVVNPMPGGVV 412
2 -96.400IDP04681 gene: adhB; alcohol dehydrogenase, zinc-containing [Bacillus anthracis str. `Ames Ancestor`] GBAA3131 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  42  1MKAVTYQGPNQVQVKQVDDAKLEKKDDIIVKITSTAICGSDLHLYQGNMP-LPQGYIIGHEPMGIVEEVGPDVTKVKKGDRVVIPFNVACGHCFYCQHEMESQCDNSNPHYDS----------GGYFGYTEKFGNHPGGQVEYLKVPFGNFTPFVIPESCELEDESLLSDVLPTAYWSVINAGVKPGDTVIVLGCGPVGLMTQKFAWMHGAKRVIAVDYLDYRINYAKKINNVEVFEFTKFP--DMGEHLKEITHGGADVVIDCVGMDGKKSPLEFLEQKLKLQGGTLGPIQIATKAVRKYGTVQMTGVYGGNYNAFPLGAFWVRNINLKMGQAPVIHFMPELFEKITNKEFDPKEIITHKIPLEEASYGYQIFNNREDDCIKVILKP........................ 377
3 -74.400IDP02503 gene: gutB; putative zinc-binding dehydrogenase [Yersinia pestis CO92] YPO2502 [Yersinia pestis CO92]  ali follow..  27  61MSAVVCHGPQDYRLEHVPTPVP-KAKELVIKVKGCGICAGDCKCKNGETPWVKPPVVPGHEFYGHIVALGEGTESYKLGERVIAEQIVPCWDCRYCNSGSYWMCETHNIYGFQKD-------------------VAEGGMAEYMRFSENAI-VHKIPESLSHEDAVLI-EPMACAIHTVARGDIQLDDVVVLAGAGPLGLCMVPVARLKTPKKLIVIDTIEERLALAKAFGADVVINPLKED--ADKIVKSLTGGYGCDVYIEATGAP--------------------IGVTQGLQMIRKLGRFVEFSVFGQETTVDWSIIGDRKELDIRGAHLAPYS-YEIATDLFERGLVTSKGIVTHSYSLDDWEKAFELADSTN--SIKVILVP........................ 408
4 -56.800IDP90877 oxidoreductase, zinc-binding dehydrogenase family [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1548c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  20  13SKGYAMLSKDAFTPFEFSRHA-IGDNDILIKILYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVSCGECDACKRSQEQFCENGKTIFTYNSCDVFHG-----------NENTYGGYSNNIVVSEK--FAVCVPKDAPMEKVAPLLCAGITTYSPLKFSNIKEGSSVAVAGFGGLGMMAVKYAVKMGA-KVSVFARNENKKADALAMGVSSFYTSCDKNAV----------KERFDLIISTIPTP--------------------YNPAIYLDLLKFGGEMAIVGLPPHEPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHGIYP---ETELITPQEIDKAYENLTSGKAKFRYVI........................... 353
5 -45.100IDP04685 alcohol dehydrogenase, zinc-containing [Bacillus anthracis str. `Ames Ancestor`] GBAA3438 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  22  1MKAQIIHDSSVFQLEEVSKPK-LLPGHVLIDVKATSVNPIDTKMRSGAVSAVAPPAILHGDVAGIVIEVGEGVSKFKCGDEV--------------------------------------------YGCAGGFKETGGALAEFMLADAR--LIAHKPNNITMEEAAALPLVAITAWESLDRANIKSGQNVLIHGTGGVGHVAIQLAKWAGA-NVFTTASQQNKMEIAHRLGADVAINYKEESESVQEYVQKHTNGNGFEVIFDTVG---------------------GKNLDNSFEAAAVNGTVVTIAARST----HDLSPLHAKGLSLHVTFMALKEILTKITKIVEEGKLRP--LDSKSFTFDEVAQAHEYLESNKA---KIVLKN........................ 333
6 -40.700IDP00076 gene: yhdH; putative oxidoreductase NT01ST4228 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  1MQALILEGKTLASVQHLEESQL-PAGDVTVDVHWSSLNYKDALAITGKGKIIRHPMIPGIDFAGTVHASE--DPRFHAGQEVLLTG-------------------------------------------WGVGENHWGGLAERARVKGD--WLVALPAGLSSRNAMIIGTAGFTAMLCVDAGIRPQDGEVVVTGAGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANRILSRDEFA------ESRPLEKQLWAGAIDTVG---------------------DKVLAKVLAQMNYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVMTPPARRAEAWARLVKDLPESFYAQAATEITLADAPKFADAIINNQV---RTLVK......................... 322
7 -10.700IDP95362 set237a-002 [Escherichia coli]  ali follow..  12  43..................................................................................................................................................................................IKHGCINKKSHLLDLACS-TGFSSRECFKKEGA-SAEGIDISESAVMVANEKAKKLKAN-----NLLKYYVADACDLPFEDNTFTHV-----------GGCNFAFIQNRLIALNETHRCLNHMGSMCISNFYYRRKISDKLINDVYNAINFRPNPLWTLEYWHQFFSE---TLVSEENHEMESQSEDELKADIYDYIFNRNEFTKGL........................... 231
8 -10.100IDP95435 set236a-037 [Undefined organism]  ali follow..  14  23.....................................................................................................................................................................................ASLGPVRSVLDLACG-LNPLALPWMPLAPDARYYACDIYADMIAFLNSFFAQAGIRGQARVCDLVAGAPDEQ----VDLALVLKALPP-------------LDQQAKHAGRDLLRALNARHILVSF......................................................................................................... 130
9 -10.100IDP92743 hypothetical protein lpp2747 [Legionella pneumophila str. Paris] YP_125052 [Legionella pneumophila str. Paris]  ali follow..  16  28.............................................................................................................................................................................ISSKFLAKISIHSNDYLLDAGCGD-GSFTQMLANLVPDGYVLGLDRSKTMIDYANKHCRSINVRFDIGD------IQEPIIYGPFDNILSFWCLH----------------TDLEKSLSNLYHVLKPGGKICAI......................................................................................................... 139
10 -9.940IDP95361 set237a-001 [Yersinia pseudotuberculosis PB1/+]  ali follow..  7  41..................................................................................................................................................................................IEKSRINSNTYLLDLACS-TGFSARNIVHKTGC-SAEGIDISARSIESANQLAVQGNI-----AECVHFSVGNAESVSFTDNTFTHI-----------AGCCFGFISDKPAALVEVQRVLKQDGFLCISPFFYESEPDNELLSLVEQYIGYRPDIKRDYSYWFNFFN................................................................... 190
11 -9.690IDP95457 set236a-001 [Undefined organism]  ali follow..  13  46.....................................................................................................................................................................................AELPPIHSVIDIACG-LNPLAHPWMPLAPAATYDAYDIYQGMMTFLNDYFALRNIRGTASACDVIQSCPTQE----VDVAL-------------LLKVLPCLEQLEKWAAHHLLHTLNARYLIVSY......................................................................................................... 153
12 -9.670IDP95459 set236a-003 [Undefined organism]  ali follow..  14  26...........................................................................................................................................................MHHHASTRERLPILDPFYTTIFEALRENPGEVHSILDVACG-LNPLAIPWMPLLPDTTYHALDIYADMIQFVGRCLALMQVKGTADTCDVVAALADPTLRRPVDVAF-------------VLKTIPCLEQVDKRIGSSLLDILGAKQLVVSF......................................................................................................... 169
13 -9.650IDP02273 hypothetical protein GBAA3714 [Bacillus anthracis str. `Ames Ancestor`] GBAA3714 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  85..................................................................................................................................................................................IEHLQLQGRERILEVGCAN-GKFLSLLQANGHKGQLTGFDQSEAMLSEATKTNNLIEWRLGDAGK----------EANYYDLIV--------------ARHMLYHMKDVEKTIQGFHKVIHPGGSLLATTNSNVTLPRI-CNRMLDTFDLPKTTSSVTPFCLENGKEILQSVFPTVESVIHNALIFHHATPIVNYISSMFPSLNIPDNTLLHAEMKDWLKEEVENELLLHNGIW 299
14 -9.520IDP95458 set236a-002 [Undefined organism]  ali follow..  15  96.......................................................................................................................................................................................LPAPHSVLDLACG-LNALTLPWFPHMEAITYYACDIYRPMIDFLNATMEIMHIRGCAEVRDILQSCPT----QEADLAL-------------VLKTIPCLEQIDKQAGTRLLRAINARYMIVSF......................................................................................................... 201
15 -9.320IDP92740 hypothetical protein lpp2134 [Legionella pneumophila str. Paris] YP_124446 [Legionella pneumophila str. Paris]  ali follow..  10  19..............................................................................................................................................................................NDVFLKTIHSKLSGNILDIGCGD-GHYTSLLAGKVKHGQVLGIDSSEQMIMHANQQWARTGLSFEVHN------IEEFHQPQSFDLALSFWCLH----------------TNIHISFPNIFHLLKREGKLYAVMSSFSDHSILQTWKELAKQNLYRDLTEQYISPIYGVINLLNRLPFKRIKLLPHIDYYKNLLLTMPFIKRVPSEITDTLVE......................... 222
16 -9.300IDP06056 hypothetical protein jhp1397 [Helicobacter pylori J99] NP_224115 [Helicobacter pylori J99]  ali follow..  9  7..............................................................................................................................................................RLYQPLNAYSYNSDSLFLYDFSRPFIKNSGAILDIGSG-CGVLGLLCARDNPLASVHLVEKDSKMAFCSQK-----NALKFPNAQVFESDFLDFNPPILYDAIVC---ALGSIKSQIKGHARHQSELDFASLVAKVKKCLKPKGYFIFC--YEALSLCLVIESLKSVKLTLETLRFVQSFKDKNAHLMLGAARNNSKSALKVLPPLDNTKEVLNIYQICNTYSIKAPLD......................... 238
17 -9.080IDP95407 set236a-009 [Undefined organism]  ali follow..  16  81.......................................................................................................................................................................................LPPVRSVVDVACG-LNPLAIPWMGLADGTGYVAYDIYEDMMGFLGGVLGIFGVEGRGETRDVVAEPSVEE----VDLAL-------------VLKAIPCLEQIDRSAGRRLLDGLKAKNMVVSF......................................................................................................... 186
18 -9.060IDP95425 set236a-027 [Undefined organism]  ali follow..  15  2...........................................................................................................................................................................................RSVLDLACG-LNPLALPWMPLAPDARYYACDIYADMIAFLNSFFAQSGIRGQARVCDLVAGAPDEQ----VDLALVLKALPP-------------LEQQAKHAGRDLLRALNARHILVSF......................................................................................................... 103
19 -9.040IDP95411 set236a-013 [Undefined organism]  ali follow..  10  25.......................................................................................................................................................................................LPPITSILDLACG-LNPLAIPWMPLPAGVTYAACDIYQDQVDFLQQCFVVFGVEGAAKPCDLLQACPTQA----ADVVLLLKTIPC-------------LEQVDKTIGRKLLDTLNAPILCVSFPAQSLGGRHKGMTVNYEQHFR.................................................................................... 151
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.