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Query: IDP00950 gene: wraB; TrpR binding protein WrbA STM1119 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIFAKAGGKTQNAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGSLYGKLGSVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNGLast
1 -91.200IDP00950 gene: wraB; TrpR binding protein WrbA STM1119 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MAKILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIFAKAGGKTQNAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGSLYGKLGSVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198
2 -32.200IDP95068 azoreductase [Clostridium perfringens B str. ATCC 3626] AGH15624 [Clostridium perfringens B str. ATCC 3626]  ali follow..  15  1M-KVLLVNGSKEGCTYTALKEVSKTLEENGIDTEIFQVGN-IGCGSCKKTGECFMKDGVNEFVEKAKDADGFVFGSPVYYAAASGSITSFLDRAFYSGGKHMAFKP--GAVICSARRAGTTSTLDQLSKYLTICNMPVV-----------------SSQYWNMVHGNTPEKVKKDLEGMQTMRVLGRNMAWLIKCIE. 184
3 -27.400IDP90863 gene: hemG; protoporphyrinogen oxidase [Yersinia pestis CO92] YPO3761 [Yersinia pestis CO92]  ali follow..  18  1M-KILILYSSRDGQTKTIASYIAKQLTEAA---------------------TCEIQDLSQVGQIDLSQYQQVIIGASVRYGHFSPVLNKFVNKH-----VAQLSQMPSAFFAVNLTARKPEKRSPQTNTYVRKF-LCSVFAGALRYPRYSWIDRIMIQLIMRMTGGETDTSKEVEYTDWQEVSRFTQDFLALQYK... 176
4 -26.500IDP01446 flavodoxin FldA VC2099 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  1MASVGIFFGSDTGNTEAIAKMIQKQLGKKLVHVQDIAKSS----------------------KEDINNFDLLLLGIPTW-GEAQCDWDDFFPEL----EAIDFSTKLVAIFGCGDQEDYAEYAMGTVRDIIQAKGATIVGHWPTEGYEFEASKALVDENHFVGLCIDEDRQPELTEQRVTK-------VNQVYEEM.. 168
5 -21.200IDP02172 gene: fldB; flavodoxin FldB [Yersinia pestis CO92] YPO0893 [Yersinia pestis CO92]  ali follow..  22  1M-KIGLFYGSSTCYTEMVAEKIRDILGEDLVDLHNLKEVS----------------------PRLMEEYSILILGIPTW-GELQEDWEAIWPQL----TQLNLKGKIVAMYGMGDQFG................................................................................ 92
6 -20.900IDP01459 flavodoxin VC2420 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  21  1M-KIGLFYGSSTCYTEMTAEKIRAILGEELVDIHNVKESP----------------------LTLMSDYDLLLLGISTW-GEIQEDWSAVWDHI----GGVSLKNKYVALFGLGDQE................................................................................. 91
7 -20.900IDP00511 gene: mdaB; putative modulator of drug activity YPO0670 [Yersinia pestis CO92]  ali follow..  12  1MSNVLIINHSKGALNLTLTNVAADFLRESGHQVKITTVDQGY---------------DIESEIENYLWADTIIYQMPAWWMGEPWILKKYIDEVKGYGSGGLIQGKTYMLSVTWNA.................................................................................. 127
8 -20.500IDP02263 hypothetical protein GBAA0966 [Bacillus anthracis str. `Ames Ancestor`] GBAA0966 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  9  1MNKTLIINAHPKVDSIKVFKHFLESYKELISNNETIEQINKQGNGQELTREEQKVTERMSEILQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETLLKDGRRMLVIQASGGIYTNDDWYTDVEYSHKYLKAMFNFLGIEDYQIVRAQ--------GTAVLDPTEVLQNAYKEVEEAASRLANKYIFSLEE... 220
9 -20.000IDP00129 gene: mdaB; NADPH-specific quinone oxidoreductase NT01ST3985 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  1MSNILIINHSNGQLNDTLTEVADGLLRDLGHQVKIVRA---------------DSDYDIKEEVQNFVWADVVIWQMPGWWMGAPWTVKKYMDDVKKYGSGGLVQGKKYMLSLTWNA.................................................................................. 127
10 -19.800IDP00106 gene: mdaB; modulator of drug activity B NT01SF3707 [Shigella flexneri 2a str. 2457T]  ali follow..  11  1MSNILIINHSNGQLNDTLTEVADGTLRDLGHDVRIVRA---------------DSDYNVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVKKYGSGSLVQDKKYMLSLTWNA.................................................................................. 127
11 -19.000IDP01979 gene: yheR; glutathione-regulated potassium-efflux system ancillary protein KefG [Salmonella typhimurium LT2] STM3458 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  4PAKVLLLYAHPESQDSVANRVLLKPAIQHNNVTVH------------LYARYPDFFIDTPYEQALLREHDVIVFQHPLYTYSCPALLKEWLDRVASGPGGNQLVGKYWRSVITTGEPESA.............................................................................. 117
12 -18.900IDP04035 azoreductase [Bacillus anthracis str. Sterne] BAS5262 [Bacillus anthracis str. Sterne]  ali follow..  12  1MTKVLFVKANEQAVSVKLYEAFLASYKEAHPNDTVINGTFKAGKGFDLTEEEAKAVAVADKYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDKYTPEGPVGLIGDKKIALLNARGGYSEGPAAEVEMAVKYVASMMGFFGA----------------TNMETVVIEGHNQFPDKAEEIITAGL---EEAAKVANKF.. 208
13 -18.800IDP04320 gene: acpD; acyl carrier protein phosphodiesterase [Yersinia pestis CO92] YPO2323 [Yersinia pestis CO92]  ali follow..  14  1MSKVLVLKSSILATSNQLADFFVEQWQAAHAGDQITVVGALRPSGTALTPRQQEALALSDELIAELQANDVIVIAAPMYNFNIPTQLKNYFDRYTEKGPEGLVTGKRAIILTSRGGIHKDTPTDLVVPYLRLFLGFIGI------------------TDVEFVFAEGIAYGPEVATKAQADAKTLLAQVVAA...... 201
14 -17.600IDP02003 glutathione-regulated potassium-efflux system ancillary protein KefG [Yersinia pestis CO92] YPO0190 [Yersinia pestis CO92]  ali follow..  16  5PPKVLLLYAHPESQDSVANRVLLQPVQQLEHVTVH------------LYAHYPDFFIDIHHEQQLLRDHQVIVFQHPLYTYSCPALLKEWLDRVANGVGGHALTGKHWRSVITTGE.................................................................................. 114
15 -16.900IDP01886 gene: yabF; glutathione-regulated potassium-efflux system ancillary protein KefF [Salmonella typhimurium LT2] STM0085 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  1M--ILIIYAHPYPHHSHANKRMLEQAGTLENVEIR------------LYHLYPDFNIDVAAEQEALSRASLIVWQHPMQWYSVPPLLKLWMDKVAYGHGGTALHGKHLLWAVTTGGG................................................................................. 109
16 -14.900IDP91026 flavodoxin [Yersinia pestis KIM 10] y3142 [Yersinia pestis KIM10+]  ali follow..  12  1MAQVGIFVGTVYGNALLVAEEAENILKDQGHEVKLF--------------------DEGTLEDWQHYRQHYVLVITSTT-GDFPDSIASLFVAV........................................................................................................ 75
17 -14.200IDP02653 anaerobic nitric oxide reductase flavorubredoxin [Salmonella typhimurium LT2] STM2840 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  21  252.DRITIFYDTMSNNTRMMADAIAQGINEVDPNVAV--------------KIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGL----RFRNKRASAFGSHGWSGGAVDRLSTRLQDA................................................................... 363
18 -9.860IDP95029 NADPH-cytochrome p450 reductase [Plasmodium falciparum 3D7] AAN37091 [Plasmodium falciparum 3D7]  ali follow..  16  3.ERILLLYGSEYGTSYDCCRNIYYELYTS----------------------DIDFFSLNEINIISLYKYDNIVIIVSTT-GCCPHNMSQFWLAL----HNNNLIFYDNMKFHLFGLGDSS----------------------YDNYNQVAKKLKKKLKSLNANIVNYSLGNYQHPSMHFSNFNIWKNNLYTFLKKN.. 151
19 -9.300IDP01306 PTS system, cellobiose-specific IIB component VC1281 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  20  1MKKILLC--SAGMSTSMLVKKMQQAAESKGIECKIDAL-------------------SVNAFEEAIQEYDVCLLG-P-QVRFQLEELRKTADEYG....................................................................................................... 73
20 -9.110IDP05707 hypothetical protein lmo2762 [Listeria monocytogenes EGD-e] lmo2762 [Listeria monocytogenes EGD-e]  ali follow..  16  1MKKILLV--AAGMSTSLLVTKMKAHATSIGEEIEIEAL-------------------PVSEASNVVDKMDIVMLG-P......................................................................................................................... 56
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.