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Query: IDP00951 gene: ycdW; putative oxidoreductase STM1135 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEIIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALVWQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRPAEAIDYISRTITQLEKGEPVTGQVDRARGYLast
1 -98.500IDP00951 gene: ycdW; putative oxidoreductase STM1135 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MEIIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALVWQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRPAEAIDYISRTITQLEKGEPVTGQVDRARGY 312
2 -50.700IDP02277 glycerate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1434 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  21  35................DELTERVKDKDALLSLLSTKVTKEV---------IDAAPSLKIVANYGAGYDNI-------TYAGEKGIAVTNTPKV-STEATAELTFALLLAAARRIPEGDTLCRTTGFNGWAPLEVHGKTIGIIGLGEIGKAVAKRAKAFGMNILYTGPNRKPEAESELEATYVTLEELLQTADFITINCAYNPKLHHMIDEEQFKMMKKTAYIVNASRGPIMHEAALAHALKTNEIEGAALDVFEFEP-KITEELKGLKNVVLAPHVGNATFEDAMAEMAVRNILAVLKGEEPVTPVNQK... 318
3 -47.700IDP91791 gene: vanH; vancomycin resistance protein [Enterococcus faecium] AAA24789 [Enterococcus faecium]  ali follow..  20  4IGITVYGCEQDEADAFHALSPRF-GVMATIINAKSAPFNQCISVGHKSELALKRAGVKYISTRSIGCNHI-------TAAKRMGITVDNV--AYSPDSVADYTMMLILMAVRNVKSIVRSVEKHDFRLDSDKVLSDMTVGVVGTGQIGKAVIERLRGFGCKVLAYSRSRSI-------VNYVPFDELLQNSDIVTLHVPLNTDTHYIISHEQIQRMKQGAFLINTGRGPLVDTYELVKALENGKLGGAALDVLEGEE-QFLLKLQRMPNVIITPHTAYYTEQRDTVEKTIKNCLDFERRQE........... 320
4 -46.700IDP00460 gene: serA; D-3-phosphoglycerate dehydrogenase YPO0914 [Yersinia pestis CO92]  ali follow..  22  45................ESLKASIRDAHFIGIRSRTHLSEDV---------FAAAEKLVAVGCFCIGTNQV-------KAATKRGVPVFNAPFSN-TRSVAEMVLGELLLMFRGIPSANAKAHRGEWNKLAVGEARGKKLGIIGYGHIGTQLGILAESIGMKVFFY--DIENKLSLGNAQQVRQLSDLLNMSDVVSLHVPENHTTKNMIGAEQLAQMKPGALLINASRGTVVDIPALCDALSSNHLSGAAIDVFPEEPAPFNSPLCEFDNVLLTPHIGGSTQQENIGDEVAGKLAKYSDNGSTLSAVN..... 326
5 -39.500IDP90820 gene: pdxB; erythronate-4-phosphate dehydrogenase [Salmonella typhimurium LT2] STM2370 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  20  1MKILVDENMPYARELFSRLGEVVPGRPIPVEELNHADALMVRSVTKVNESLLSGTPINFVGTATAGTDHV------EAWLKQAGIGFSAAPGCN-AIAVVEYVFSALLMLAERDGF----------------SLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFR---TLDELVQEADVLTFHTPLYKDTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP-DLNVALLEAVDI-GTSHIAGYTLKARGTTQVFEAYSAFIGREQRVALET..... 288
6 -39.500IDP04474 gene: pdxB; putative D-isomer specific 2-hydroxyacid dehydrogenase [Yersinia pestis CO92] YPO2763 [Yersinia pestis CO92]  ali follow..  23  1MKILVDENMPYAEELFRRLGDVVPGRPIPRDALVDADALMVRSVTKVNEALLHGTSIGFVGTATAGTDHV------DTWLRQQGIGFSAAPGCN-AIAVVEYVFSALMMMAERDGF----------------QLRDKTVGIIGVGNVGSRLNARLQALGVRTLLCDPPRADRGDNEAFW---PLEKLVREADVLTFHTPLNKQSLHMADDELLAALPDGRILINACRGAVVDNAALLRALEKGKKLSVVLDVWEPEP-DLSLPLLARVDI-GTPHIAGYTLKARGTTQVFEAFSQHLGQPQSVELAS..... 288
7 -38.600IDP90773 erythronate-4-phosphate dehydrogenase [Vibrio cholerae O1 biovar eltor str. N16961] VC2108 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  22  7MKILIDENMPYAQALFSQLGEVI--KPGRTLTADDLIDVDALMIRSNDALLAKANRLKFVGTATAGMDHV------QALLRERGIFFTAAPGCN-KVGVAEYVFSVLMVLAQQQGF----------------SVFDKTVGIIGAGQVGSYLAKCLSGIGMKVLLNDPPKQAQGDEREFT---ELETLLKQADVITLHTPITRPTHHLIDAAILEQLRSDQILINAARGPVVDNAALKARLQQGDGFTAVLDVFEFEP-QVDMELLPL-LAFATPHIAGYGLKARGTTMIFNSYCEFLGSAHCANPAS..... 295
8 -13.900IDP02524 gene: ilvC-2; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1852 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  7..............................................................................................................................QDANVGLLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA-FEVMSVSEAVRTAQVVQMLLPDEQQAH-VYKAEVEENLREGQMLLFSHGFNIHFGQINPPS......................................................................... 119
9 -13.400IDP02330 gene: ilvC-1; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1419 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  24  8..............................................................................................................................KDVTVNVLKEKKVAIIGYGSQGHAHAQNLRDNGFDVVVGLRKGKSWDKAKE-FSVYTVAEAAKQADVVMILLPDELQPE-VYEEEIAPNLQAGNSLVFAH...................................................................................... 107
10 -12.500IDP90757 gene: ilvC; ketol-acid reductoisomerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0632 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  19  9..............................................................................................................................KDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNVTIGLREGSVSAVKAKNAGFESVSEASKIADVIMILAP-DEIQADIFNVEIKPNLSEGKAIAFAHGFNI.................................................................................. 113
11 -11.700IDP95479 S-adenosylhomocysteinase Q5CPH1 [Cryptosporidium parvum]  ali follow..  209...........................................................SEETTTGVLRLKIMESEGK-----LLPAINVNDSVTKSKFDNTY--------------CRQSLLHGLFNGCIQMLAGKKIVVLGYGEVGKGCAQGLSGVGARVIVTEIDPCALQASMEGYQVSVLEDVVSEADIFI----TATGNKDVITVEHMRKMKENAYIANIGHFDLLCKGRLVNLGCATGHPPLVMSMSFTNQVLAQMDLWKSRELVDRSKKLSKELDEYVARLHLDVL-----GIKLTKLTETQAKY 479
12 -11.300IDP06064 3-hydroxyacid dehydrogenase [Helicobacter pylori J99] NP_223303 [Helicobacter pylori J99]  ali follow..  11  1........................................................................................................................................MKIGWIGLGAMGTPMATRLRDAGLEVSVYNRTESKAAPLKEKGVATSPIDLAAKVDLVFTMLSDKAAIDAVLAPK-FWEQMSKKIVVNMSTIAPLESLSLEKIAQKH--QATYLEA----PVSGSVGAAKAGALLIL--AAGDEEVISKLKPVLAHL-----GSQTFYLGKVGQG. 163
13 -11.300IDP06313 hypothetical protein SP_1627 [Streptococcus pneumoniae TIGR4] NP_346067 [Streptococcus pneumoniae TIGR4]  ali follow..  11  1........................................................................................................................................MKLAVIANGQAGKAIVEEAVKRGHEVTAIVRSENKSQAESIIKKDELTKDDLTGFDAVISAFGAYTPDTLPLHSKSIELFNQLLFLVVGGAGSLYIDET-TPDFPEEFKPLAKAQADELDLLRTKNNLW----TFVSP...................................... 150
14 -10.500IDP06299 6-phosphogluconate dehydrogenase [Streptococcus pneumoniae TIGR4] NP_344902 [Streptococcus pneumoniae TIGR4]  ali follow..  16  1.....................................................................................................................................MTKANFGVVGMAVMGRNLALNIESRGYTVAIYNRSKEKTEDVKNFVPSYDVESFVNSIEKPRRIMLMVQAGPGTDAQALLPHLDKGDILIDGGNTFYKDTIRRNEELANSGINFIGTGVSGGEKGALEGP-----SIMPGGQKEAYELVADVLEEISAKAPE-DGKPCVTYIGPDGAGH 181
15 -10.400IDP92093 adenosylhomocysteinase, putative [Toxoplasma gondii ME49] TGME49_025050 [Toxoplasma gondii ME49]  ali follow..  11  195...........................................................SEETTTGVHRLLQMAKKKE-----LFPAINVNDCVT-KSKFDNVYGCRHSLPDGIMRATDVM------------LGGKRVVICGFGDVGKGCAAAMKGAGARVVVTEVDPCALQAAMEGYSVSTLESQLATADIFI----SATGNKDIITARHMSQMKNNAIVGNIGHFDVLAEGRLLNLGCATGHPSFVMSCSFTNQTLAQLDLWDNKRYQNDVYLLPKELDEKVARLHLPAL-----GCELTTMSQEQAAY 461
16 -10.400IDP02226 gene: yqjI; 6-phosphogluconate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA0164 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  1.....................................................................................................................................MENLQIGVVGVGVMGKSLALNFESKGYSVALYDISKEKVDETKNLVGTHIVEEFVNSLESPRKILLMVNAGEITDKDSLVPHLDKGDILIDGGNTYFVDTIRRNKRLAEEGINFIGAGVSGGEEGALKGP-----SIMPGGQKDAYEKVKDMLENISAKVN.................. 164
17 -9.560IDP90674 gene: hemA; glutamyl-tRNA reductase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0542 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  95........................................................IHHLFSVASSLDSLVVGETQIAGQLKDAFAFAVKNNF--CGVHLSRAVHSAFKCAAKVRNETQISKNSI--AKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDLCERLG-ENLKKYLNQYEFFFSA---TNAPNAIITNSLIEELSYKRYFFDIA---------VPRDIDINENENISVAVDDLEIVVQKN---------LALREQEARMAYGIIGRETSEFFRYLNDLALMPII...... 336
18 -9.240IDP05722 gene: tyrA; prephenate dehydrogenase [Bacillus anthracis str. Ames] BA_2954 [Bacillus anthracis str. Ames]  ali follow..  10  15........................................................................................................................................KKVVLIGTGLIGGSLALAIKKDHVTITGYDIFQEQVERAKELEIAVDLQHACEEAHLIVFASP-VEETKKLLHKLASFHLREDVIVTDVGS----TKGSIMNEAEA--LFSKEISFIGGHPMAAKAHLFENAFYILTPMHHVPNEHVEELKDWLKGT................... 178

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.