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Query: IDP00957 gene: ycfH; predicted metallodependent hydrolase STM1202 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLPGYRHMRKLVGKRDNVVFSCGVHPLNQDEAYDVEELRLLAAEDDVVAMGETGLDYFYTPETKIRQQASFIHHIQIGRELHKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQITTDNFARLFHIDASRLSSIRLast
1 -118.000IDP00957 gene: ycfH; predicted metallodependent hydrolase STM1202 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLPGYRHMRKLVGKRDNVVFSCGVHPLNQDEAYDVEELRLLAAEDDVVAMGETGLDYFYTPETKIRQQASFIHHIQIGRELHKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQITTDNFARLFHIDASRLSSIR 265
2 -104.000IDP01786 hydrolase, putative [Coxiella burnetii RSA 493] CBU_0502 [Coxiella burnetii RSA 493]  ali follow..  43  2................................GVEHILCVGVDLTHAQTVIEIAARFENVSASVGLHPSEKVDHETVQELVEVANHPKVVAIGETGLDYYYNHSELGKMRDRFRCHVQAALKLKKPLIIHSRSAQTDTIQIMQEENAQSVGGVMHCFTESWEMAEQAMKLGFYISFSGIVTFKNAKNVAEVAKKVPLEKMLIETDAPYLAPVPYRGKKNEPQYIPYVAERIAELKNIPLNEVARKTTENYYHLFG.......... 225
3 -100.000IDP00130 gene: yjjV; putative deoxyribonuclease YjjV NT01ST5659 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  25  3WRFIDTHCHFDFPPFT---GDERASIQRACEAGVEKIIVPATEAAHFPRVLALAARFPSLYAALGLHPIVIERHADDDSQQALAQQQNVVAVGEIGLDLYRDDPQFARQERFLDAQLQLAKRYDLPVILHSRRTHDKLAMHLKRQDL-PRTGVVHGFAGSLQQAERFVRLGYKIGVGGTITYPRASKTRDVMARLPLDALLLETDAPDMPLKGFQGQPNRPEQAARVFDALCELRPEPAEVIADTLYRNTITLFRL......... 257
4 -13.300IDP00873 gene: pyrC; dihydroorotase STM1163 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  13..PDDWHVHLR-------DGDMLKTVVPYTSEIYGRAIVMPNLASPITTVDAAIAYRQRILDAVPAGTCYLTDSLDADELERGFHEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKLGIPLLVHGEVTTKDAAQYVRDGNDYLAATITHLMFNRNDMLVGGIRPHLYCL---LKRNIHQQALRELVASGFTRAFLGTDSAPHSRHRKE-GCFNAPSALGSYAAVFEE--MNALAHFEAFCSLNGPQFYGLPMNTGWVE. 314
5 -13.000IDP04461 gene: pyrC; dihydroorotase [Yersinia pestis CO92] YPO1587 [Yersinia pestis CO92]  ali follow..  10  13..PDDWHIHLR-------DDEMLSTVLPYTSEVFARAIVMPNLAQPITTVASAIAYRERILAAVPAG--YLTNSLDAKELTTGFEQGVFTAAKLYPANATTNSTHGVSDIPAIYPLFEQMQKIGMPLLIHGEVTTKDAADYVLAGNRFLGATVTHLMFNRNHMLVGGIRPHLFCL---LKRSTHQQALRAAVASGSDRFFLGTDSAPHAKHRKE-GVFNAPAALPAYASVFEE--LNALQHLEAFCALNGPRFYGLPVNDDVVE. 314
6 -12.400IDP90537 RecName: Full=Dihydroorotase; Short=DHOase Q9KL24 [Vibrio cholerae]  ali follow..  15  9..PDDWHVHLR-------DGDVLADTVRDISRYNGRALIMPNTVPPVTTTEMALAYRERIMAAQPQAHFELTDNTSPEEIRKAKASGKVVAAKLYPAGATTNSDSGVTSAKNIYPVLQAMQEVGMLLLVHGEVTTADAVTFVQQAGDNVAATITHLLFNRNHMLVGGIRPHFYCL-----ILKRATHQHALVAAA---KFFLGTDS---APHAKGRKEAACG-AHAALELYAEVKEGKLENLEAFASFNGPDFYGLPRNQETVT. 309
7 -12.100IDP00351 gene: adeC; hypothetical protein lmo1742 lmo1742 [Listeria monocytogenes EGD-e]  ali follow..  14  74..FIDAHVHVESAMVTTIVTDPHEIANVAGEKGIEFML-------EDAKGAPLDMFVMLPSSVPATEGEHNGETLHAEKLHPLYRHEKVIGLAEV-----MDFPSVAKGSDDILRKIIDAKKEGGRIDGHGAGLTSADLNNYLAVGIRT-----H--STTAKEATDRLRAGMFVMLREGTVGRDLLQTIPAVSEKNSHRFCFCTDDKLINDLITEGSINY-------NIKLAIKNGIDPITAIQMATINAANCHNLP........ 318
8 -11.900IDP90750 gene: pyrC; dihydroorotase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0259 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  6..PLDMHLHLR-------DNQMLELIAPLSARDFCAAVIMPNLLCNLEDLKAYKMRILKACKDENFTPLMTLFFKNYDEKFLYSAKDEIFGI-PAGITTNSNGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETTTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDKEALCELAFSGYEK-VMFGSDS---APHPKDTKECCGC-APVILPVLAELQNSSEENLQKFLSDNTCKIYDLKFKEDKIL. 300
9 -10.100IDP00835 gene: cap1C; capsular polysaccharide biosynthesis protein Cap1C SACOL2685 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  1..MIDIHNHIDIDDGPKTIEKSIALLKQAKDEGVTSIVATNTFQQVLVKLAELRTHPEVQALDIKLFP--GQEIRITDSILKGLDNGSIQGINRS-IEFPTGEVPHYTKQLFF----EIQSRGYIPIIAHPER--------------------NRSIAKNPEILYELVANGALSQLTSSLVGGFGKNIQKLSLQFIECNLFVASDA--------HSCDQRPFLMQELFHNHKLKKY---SNDIEALLRNASSVIN.......... 233
10 -9.740IDP00347 gene: racE; hypothetical protein lmo1237 lmo1237 [Listeria monocytogenes EGD-e]  ali follow..  15  1...........................................................MKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGV-LGTLGTV---ESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVI...................... 180
11 -9.650IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames]  ali follow..  17  10...............................................................IGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKVTKKGKIGV-IGTVGTI---QSNMYEKALHELDTYLKVHSHACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLI...................... 185
12 -9.620IDP05326 gene: murI; glutamate racemase [Clostridium difficile 630] CD3562 [Peptoclostridium difficile 630]  ali follow..  15  6...............................................................IGVFDSGLGGLTVLKEIMKILPNEDIIYFGDTARIPYGSRSKETIIKYTFQAINFLKTKGVKAIVIACNTATARSLKEAQEKYDIPIIGVIEAGARTAVSSTKNKIVGI-IGTEGTI---SSKAYNLEISKIDESIEIVNKACPLFVPIVEEGWANTEVAKLTAKIYLQELKEKNIDSLV...................... 181
13 -9.530IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames]  ali follow..  14  7...............................................................IGVIDSGVGGLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVIHPGSRTALKVTNTYHVGI-IGTIGTV---KSGAYEEALKSINNRVMVESLACPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLI...................... 182
14 -9.240IDP00795 gene: pyrC; dihydroorotase SACOL1213 [Staphylococcus aureus subsp. aureus COL]  ali follow..  14  54..FVDVHVHLREPGGEY-KETIETGTKAAARGGFTTVCPMPNTRPDSVEHFEALQKLIDDNAQVRVLPYASITTRQLGKELV-----DFPALVKEGAFAFTDDGVGVQTASMMYEGMIEAAKVNKAIVAHCEDNICESVQIARDVLLAEAAGVCHVSTESVRVIRDAKRAGIHVTAE-LLTEDDIPGNNAIYKMNPPLR-CIATDAPHARDEKAQGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNLEYGTLK... 368
15 -9.090IDP02818 gene: pyrC; dihydroorotase [Bacillus anthracis str. `Ames Ancestor`] GBAA4027 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  55..LVDVHVHLREPGGEH-KETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMT---DFETLKELGAFAFTDDGVGVQDASMMLAAMKRAAKLNMAVVAHCEESVCESVHIARDILLAEAADVCHVSTGSVRVIRDAKRAGIKVTAE-VLCEDDIPSADPNFKMNPPLR-MIATDAPHTAEEKAQGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGLEAGRLK... 369
16 -9.050IDP00328 gene: murI; glutamate racemase Cj1652c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  3...............................................................IGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVID--AGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNI-NALATGLFVPMVEEGIFEGDFLQSAMEYYFKNITTPD........................... 174
17 -9.030IDP00335 gene: murI; glutamate racemase FTT1197c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  11  7...............................................................IGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKA--------VIDVITAGVSLVDNLNTVGVIATPATINSNAYALQIHKKNPNIEVYSNPCGLFVSMIEEGFVSGHIVELVAKEYLSYFHDKNIQALI...................... 180

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35