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Query: IDP00965 gene: add; adenosine deaminase STM1463 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIDITLPLTDIHRHLDGNIRAQTILDLGRQFNIALPAQTLETLIPHVQVTSTEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARNGLHYVELRFSPGYMAMAHQLPIAGVVEAVIDGVRDGCNTFGVEARLIGIMSRTFGEAACLQELDALLAHRENITALDLAGDELGFPGSLFLSHFNRARDAGWHITVHAGEAAGPESIWQAIRELGAERIGHGVKAVEDRALMDFLAQQRIGIESCLTSNIQTSTVASLADHPLKTFLEHGVLASLNTDDPAVQGVDIIHEYHVAAPAAGLSREQIRQAQINGLEIAFLSDSEKRALREKVAEALast
1 -109.000IDP00965 gene: add; adenosine deaminase STM1463 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MIDITLPLTDIHRHLDGNIRAQTILDLGRQFNIALPAQTLETLIPHVQVTSTEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARNGLHYVELRFSPGYMAMAHQLPIAGVVEAVIDGVRDGCNTFGVEARLIGIMSRTFGEAACLQELDALLAHRENITALDLAGDELGFPGSLFLSHFNRARDAGWHITVHAGEAAGPESIWQAIRELGAERIGHGVKAVEDRALMDFLAQQRIGIESCLTSNIQTSTVASLADHPLKTFLEHGVLASLNTDDPAVQGVDIIHEYHVAAPAAGLSREQIRQAQINGLEIAFLSDSEKRALREKVAEA 333
2 -105.000IDP04388 adenosine deaminase [Vibrio cholerae O1 biovar eltor str. N16961] VC2751 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  69  1MITSSLPLTDLHRHLDGNIRTQTILELGQKFGVKLPANTLQTLTPYVQIVEAEPSLVAFLSKLDWGVAVLGDLDACRRVAYENVEDALNARIDYAELRFSPYYMAMKHSLPVTGVVEAVVDGVRAGVRDFGIQANLIGIMSRTFGTDACQQELDAILSQKNHIVAVDLAGDELGQPGDRFIQHFKQVRDAGLHVTVHAGEAAGPESMWQAIRDLGATRIGHGVKAIHDPKLMDYLAQHRIGIESCLTSNLQTSTVDSLATHPLKRFLEHGILACINTDDPAVEGIELPYEYEVAAPQAGLSQEQIRQAQLNGLELAFLSDSEKKALLAKAAL. 332
3 -91.900IDP92118 adenosine/AMP deaminase domain containing protein [Toxoplasma gondii ME49] TGME49_015480 [Toxoplasma gondii ME49]  ali follow..  22  68..AHKIPKVELHVHMEGTLEATLAKEIATKNGVPMGSAGEEAFNDDEN-GIAFGDLNSFLAAYFHRESVLRHREDIYNVVLRYFEKSAAQNVRHIELLFDFQSP--FRQTPPRDALQGMYDACLEAEKRWGVTSRRILCFIRSFPLKKHLECVEMVTPYMSLFDGFGLAASELGHENYKFRKVFDLVKQKGFPCVAHAGEEGPAQNVIDALLHNHAARIDHGTSAVEDPGLLKHLVANQVPLTVCPLSNVCLGVCRNLEEHPLLRLIDQGLQVTINSDDPAFFGGGMNENFRGIIETCHWRLDTIKTVVLNSVYAAFLPLEKKQALAQEVESF 503
4 -91.400IDP92021 adenosine/AMP deaminase domain containing protein [Toxoplasma gondii ME49] TGME49_005720 [Toxoplasma gondii ME49]  ali follow..  22  13..IASLPKIELHAHLFGSIRVPVLEEIRQRAAEEHKQTTESAAANVARIEGKCIDIGDAFAYFSAVYEIVRRKDDIVYALRRVLEDFSQDNVVYLELRTTLKT-IPEEGIDPDNYVALLVEELKSAEKQYPMIVRLILSLNRSRLTSEVVKILDLVAKYPEWIVGVDIAGDPRKGNILPALMNPSGAHHGKLKVTVHTSEVEGSEKETKAVLKLAPHRIGHGCYLAVDQ--REFLLKEKICVEICPSSNMCTLNLRDLKDHPFSYYYGKKVAVCICTDDIGLFDTSLSKELHVLSQAYNLSLSDVMDLQRSALAAAFCRDEDKAKIEEKFFRP 364
5 -57.900IDP92013 adenosine monophosphate deaminase, putative [Toxoplasma gondii ME49] TGME49_034280 [Toxoplasma gondii ME49]  ali follow..  15  205.........DVFLKTDNYIEGRFLAEITREVISDLEERKYQHVEWRLSIYGRSRDEWTKLAKW-------VVKNKLSSKRVRWMVQVPRLYHVYRRLGMIRSF-GELLENIFEPLYDAVRNPEEHPEVFTFLHMLVGWDSVDDESYASKYTMEGGELPKPANNPPYSYWGYYMYANIRALNEFMVARGLRALAFRPHCGEAGSVSHLATMF--LLADAINHGIMLKKCPVLQYLFYLAQIGLAVSPLSN--NALFMDIAKNPLCSFFKIGLNVSISTDDPLMFHFTLLEEYSVAAHTWKLSPVDLCELARNSVLQSGFEAEFKRHWLGPKYKL 524
6 -13.200IDP00467 N-formimino-L-glutamate deiminase YPO1974 [Yersinia pestis CO92]  ali follow..  10  49.....LP-PNLHSHAFQRM-----------------------MSGLAEVAGDPQDSFWTWRDLMYRLVQQLTPEQVGVIARQLYIEMLKGGYTVAEFHYLHHSPDGSPYNDIGEMTAQLSQAAQDA----GIGMTLLPVLYSYAGIQDTESYLRQQQVANQPLQNQGLCFHSLRAVELSQMQQILHVSDKQLPVHIHIAEQ--QKEVNDCLAWCGQRPVAHATHLDTSE--LVMLANSQAVAGLCPTTEANLGD-------PGVDYIHHQGRWGIGSDSHV--SLDVVEELRWLEYGQRLRDQRRNRLTCERQ.................... 354
7 -13.100IDP04464 gene: hutI; imidazolonepropionase [Yersinia pestis CO92] YPO1972 [Yersinia pestis CO92]  ali follow..  11  65.....TP-IDCHTHL--------VFGDDRSNEFEQRLNGVSYAEIAANGGGIISTVRATRQA---------SEQQLLEQALFRLKPLLAEGVTTIEIKSG-YGLNLESEIKMLRVARRLGELLPIDVKTTCLAAHALPPEFIGQPDDYIDVVCNSIIPQENLADAVDAFCEHLAFSPAQVERVFLAAQKAGLPVKLHAEQLSALRGA-TLAAKFHAISADHLEYATESD--VQAMANAGTVAVLLPGAYYLLRE-------PIDLFRQYKVPMALASDANPGTSPSLRLMLNMACTLFRMTPEELAGVTCHAAQALGVQQT............ 363
8 -7.350IDP00130 gene: yjjV; putative deoxyribonuclease YjjV NT01ST5659 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  1...MSWRFIDTHCHFD-TGDERASIQRACEAGVEVPATEAAHFPRVLALAARFPSL-------------------------------------YAALGLHPIVIERHADDDSDKLQQALAQ--------------------------------------QQNVVAVGEIGPQFARQERFLDAQLQLAKRYDLPVILHSRRTH--DKLAMHLKRQDLPRTGHGFA--GSLQQAERFVRLGYKIGVTITYPRASKTRDVMARLPLDALL-------LETDAPDM--EQAARVFDALCELRPEPAEVIADTLYRNTITLF................ 255
9 -7.220IDP90537 RecName: Full=Dihydroorotase; Short=DHOase Q9KL24 [Vibrio cholerae]  ali follow..  13  1MTTLTITRDDWHVHLDGDVLADTVRDISR--NTVPPVTTTEMALAYRERIMAAQPQAHFEPLMALYLTDNTSPEEIRKAK-------ASGKVVAAKLYPAGATTNSDSGVTSAKNIYPVLQAMQEVG-------------------------MLLLVHGEVTTHEVDIFDREKTFLDTVLAPIVNDFPQLKIVLE-HITTADAVTFVQQAGDNVAATITAHHLLFNRNHMLVGGIR---------PHFYCLPILKRATHQHALVAAATSGKKFFLGTDSAGSYTAHAALELYAEVFEKEGKLENLEAFASFNGPDFYGLPRNQETVT...... 309
10 -6.790IDP00957 gene: ycfH; predicted metallodependent hydrolase STM1202 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  1.....MFLVDSHCHLD-----------------------------------------------------GLDYQSLHKDVDDVLAKAAARDVKFC--------------LAVATTLPGYRHMRKLVGKRDNVVFSCGVHPLNQDEAYDVEELRLLAA--EDDVVAMGETGETKIRQQASFIHHIQIGRELHKPVIVHTRDAR--ADTLAILREEKVTDCGGVLHCFTDRETAGKLLDLGFYISFSVTFRNAEQLRDAARYVPLDRLL-------VETDSPYLA-AMVRDVAEYMAVLKGVAVEELAQITTDNFARLF................ 254
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.