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Query: IDP01046 putative methyl-accepting chemotaxis protein STM3138 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFKKVLGLRHWNNNVVKIPPPAAESGANASDVVVDTPEPYERILCQKILMGISTIDIIRNAIIKSCEQLNIEKERINELNEQNDKARSSLKSLVEFITEIGTTSSDIGCRMGDLNTSLTQINACIKEIQKIANQTNLIAINSAIEAARVGDAGRGFSVISKEVKNLSEDVKHSSKSVSTLTSVIKDNTARVSEVLDNQQPVIDNITTNINQIVESIGIVIDKSLSMKSVMQYISTVQFLNIVKVDHVIWKMEVYKLLLNKDINSKITMHDQCRLGKWYYGFEGQQFSNYYSFRSLEAPHKEVHTAGHSALNYFAAGDMNAMSQELDRMERSSNEVVNQLEMLAVDLLKETTLLast
1 -92.400IDP01046 putative methyl-accepting chemotaxis protein STM3138 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MFKKVLGLRHWNNNVVKIPPPAAESGANASDVVVDTPEPYERILCQKILMGISTIDIIRNAIIKSCEQLNIEKERINELNEQNDKARSSLKSLVEFITEIGTTSSDIGCRMGDLNTSLTQINACIKEIQKIANQTNLIAINSAIEAARVGDAGRGFSVISKEVKNLSEDVKHSSKSVSTLTSVIKDNTARVSEVLDNQQPVIDNITTNINQIVESIGIVIDKSLSMKSVMQYISTVQFLNIVKVDHVIWKMEVYKLLLNKDINSKITMHDQCRLGKWYYGFEGQQFSNYYSFRSLEAPHKEVHTAGHSALNYFAAGDMNAMSQELDRMERSSNEVVNQLEMLAVDLLKETTL 352
2 -77.100IDP95064 methyl-accepting chemotaxis protein, partial [Campylobacter jejuni] AGM39603 [Campylobacter jejuni]  ali follow..  21  10LQKLEEENKNLTHKIEKFQSENLELKNKITSLEQAALESKLDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIANSINASLRNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSNAHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGK-QLADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDQHSIINKCEVAENASLDLFNVFKEMLDESDH.... 364
3 -44.100IDP91343 methyl-accepting chemotaxis protein [Vibrio vulnificus CMCP6] VV2_0072 [Vibrio vulnificus CMCP6]  ali follow..  15  235..ELNAVVGRIQDSNQQLIDSARNSSSNSDKASHNLKG-----QTHETEQVAAAITEMHSTANEIAQNAQSASDATDQAHSAASEGMITVQDTVKAIKLLAGQLDETSDVVSQLAQHGKTIGDVLIIIQGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAQRSHESTEEIQKVIGLIQSSTQKAVSSMSEGTHLAEQCVSSADSSGQKLQILLDQVTDISDRNNQIATAVEEMARVTEDMSSSVQSISDACSATNVLSSDTCHQCN............................................................................... 500
4 -42.400IDP95280 methyl-accepting chemotaxis protein [Acinetobacter baumannii ATCC 17978] YP_001085820 [Acinetobacter baumannii ATCC 17978]  ali follow..  16  338IDQLRDLVSRIHETSQEVARYTQDTQSITNQLAEASEHQAQE-----IAGASTAMNEMAQSIDQVSANASESAEVAQRSVQIASNGAQVVNRSIEGMDTIREQIQETSKRIKRLGESSQEIGNIVSLINDIADQTNILALNAAIQASMAGEAGRGFAVVADEVQRLAERSASATKQIETLVKTIQTDTNEAVISMEQTTTEVVRGANLAKDAGIALDEIQKVSGDLAKLIASISDAAKLQSASASHIATTMTVVQEITSQTTTAT....................................................................................... 597
5 -41.000IDP01485 hemolysin secretion protein HylB VCA0220 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  263IDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCAS-----QRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASA............................................................................... 530
6 -40.100IDP91610 gene: ECs4554; EspB protein [Escherichia coli O157:H7 str. Sakai] BAB37977 [Escherichia coli O157:H7 str. Sakai]  ali follow..  8  68......QKQLAQSYQIQQAVFESQNKAIEEKKAAATAALVGGIISSGILGSFAAMNNAAKGAGEIAEKASSASSKAAGAASEVANKVKATESVADVAEEASSAMQKAMATTTKAASRASGVADDVAKASDFAEDLADAAEKTSRINKLLNSVDKLTNTTAVAVTSLAEGTKTLPTTISESVKSTHEVNEQRAKSLENFQQGKQDVRRTQDDITTRLRDITSAVRDLLEVQNRMGQSG................................................................................................................... 308
7 -39.600IDP04179 methyl-accepting chemotaxis protein [Vibrio cholerae O1 biovar eltor str. N16961] VCA0068 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  262VTQLRQTVESLVRISTDVASASTELATVMTQASVNSDQ-----EKQEVEQVASAVNQLQSTAQSVTDHAHSADGAAQQANQLASQSLRMFEESHRATAKMADQLREAAQVVNQLKEQSERIGNVTEVIRSISEQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQTSTQEIQAIIEELQNQSNTANSSMHSSLSLLEQNQSLAAKVSASLTEINHSISALGQINAQVATASEEQSQVTKDINRNLSNIYELVSQNVTGITQSAAASH............................................................................... 529
8 -37.300IDP01957 putative methyl-accepting chemotaxis protein [Salmonella typhimurium LT2] STM1657 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  107VREIRSSSQTAMTLSEQLAARSLSLSVKTEQQSASLIQTAA------------SIDEMAASTKNNADNTRMASIQADCATQCARKGGELMVRVTENMRSI--------------TDCASQMTEIISLIDGIAFQTNILALNAAVEAARAGDHGKGFSVVAGEVRNLAHRSAEAAKSIKALI--------------DVTHDNVRQGAAIVQEAEKNMQEIVGGSGQLNVLMSEISTTTREQEKGINQITLALSDLESATHSNVL......................................................................................... 329
9 -35.600IDP02076 putative methyl-accepting chemotaxis protein [Salmonella typhimurium LT2] STM3216 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  263VQEVQNGSESISTAAAQIVAGNQDLAARTEEQASSVEETAA------------SMEQITATVKNTADHTSEATKLSAGAASVVKNNGEMMNQVTQKMRVI--------------NDTANRMSDIINIIDSIAFQTNILALNAAVEAARAGEHGRGFAVVAGEVRQLAQKSASSASEIRNLI--------------EDSTSQTQEGMHLVEKASALINGMVDNVEEMDVILREIGQASREQTDGISQINSAIGLIDAATQQNSC......................................................................................... 485
10 -34.700IDP01940 gene: trg; methyl-accepting chemotaxis protein III [Salmonella typhimurium LT2] STM1626 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  279VGAVRQGAEEIYRGTSEITAGNTDLSSRTEQQAAAIEQTAA------------SMEQLTATVKQNADNAHHASKLAEDASGKASRGGQMVSGVVQTMGNI--------------STSSKKISEITAVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLI--------------GASVSLIEQGSEEVIAAGSTMNEIVDAVKRVTDIMLDIAAASDEQSRGIVQVSQAISEMDRVTQQNAS......................................................................................... 501
11 -34.400IDP01089 gene: tsr; methyl-accepting chemotaxis protein I STM4533 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  267VGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAASLEETAA------------SMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDI--------------ASSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLI--------------EDSVSRVDVGSTLVESAGETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAS......................................................................................... 489
12 -34.400IDP02460 gene: cheD; methyl-accepting chemotaxis protein [Yersinia pestis CO92] YPO1675 [Yersinia pestis CO92]  ali follow..  19  267VGEVRVGADAIYSGASEIAVGNNDLSARTEQQAASLEETAA------------SMEQLTATVKQNAENARQASQLALSASETAQKGGKVVADVVQTMHEI--------------AGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAKEIKGLI--------------DDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEMDRVTQQNAS......................................................................................... 489
13 -34.300IDP01047 putative methyl-accepting chemotaxis protein STM3152 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  263VSTIRAGSDNIWRGATEISTGNNDLSSRTEEQAAALEETAA------------SMEQLTATVKMNAEHARQASQLADAASLTAGKGGELVSDVVETMNGI--------------SASSQQIAEITTVINSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAGAAKEIEALI--------------GESVRRVAQGAQLVQETGATMDAILRGVTEVTTIMKQIASASEEQSKGISQVGVAITQMDSVTQQNAA......................................................................................... 485
14 -34.200IDP02090 gene: tcp; methyl-accepting transmembrane citrate/phenol chemoreceptor [Salmonella typhimurium LT2] STM3577 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  266VSAVRDNADSIYTGAGEISAGSSDLSSRTEQQASALEETAA------------SMEQLTATVRQNTDNARQATGLAKTASETARKGGRVVDNVVSTMNDI--------------AESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLI--------------ENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTQQNAS......................................................................................... 488
15 -34.100IDP02252 gene: tsr2; putative methyl-accepting chemotaxis protein [Yersinia pestis CO92] YPO1229 [Yersinia pestis CO92]  ali follow..  17  340..KLSLVMAQIRGTSESVRVAANEIAAGNQDLSGRTESAAA-----SLQQTSAALEQISATVAQSASAARQANNAVFSASEDASRGGDVITKVITTMESI--------------EKASGKIGDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRILAQRSAQAAKEIKALI--------------ESTVSSVASGSSQVRQASNAMTDIVSSVSDVTTIMSEITNAADEQMRGIHEINSAVAQLDTMVQQNAA......................................................................................... 567
16 -10.900IDP00013 LPXTG-motif cell wall anchor domain protein BA_3254 [Bacillus anthracis str. Ames]  ali follow..  9  65LNELNKVKENVDTKVNELHERKQVADEKINEIKQHKQELDAKL-QQDKQIAEDKIAEIKEHKKQVEDKVAEVKEHKQNIDNKVNEIKEHKQTVDEKVNEMKQHKENIDQKVNELKEVKKQVDEKLAELKKAKQTAE--------KLAELKENKPNTGNTLEELKKIKSNLDSLSANLELAKQDVKNKLAALQEARQDLINKINEIKQSKQTVSDDLSKKKQDLDIKINDFKHTEKKIDDKLAEIHTTKQNID.................................................................................................... 308
17 -9.180IDP92066 gene: GAPDH2; apicoplast glyceraldehyde-3-phosphate dehydrogenase 2 [Toxoplasma gondii] ABO93620 [Toxoplasma gondii]  ali follow..  8  216.......APEFSDLRDLFFGACDATVSPDDLPSVPEALEKLAGLESDVQARGDQLDEKEKVVAEYLVAAQEAAVRHEEASRAFEDAKRNKKE---------NLAAAAEKAALEAAAEYADLTTAAQLVTEEAEQESAKA------LADAVAAGDLRFAINQKIVNEAGPEARGKVPRALLAPKHVRISDPAAGRVLKIFFHNNFAPFEDLPCAALHADAHLCRQHPRCVVQVEQSGD................................................................................................................... 430
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.