Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: IDP01089 gene: tsr; methyl-accepting chemotaxis protein I STM4533 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550
# Score Template Links and tools%idFirst MLKRIKIVTSLLLVLALFGLLQLTSGGLFFNSLKNDKENFTVLQTIRQQQSALNATWVELLQTRNTLNRAGIRWMMDQSNIGSGATVAELMQGATNTLKLTEKNWEQYEALPRDPRQSEAAFLEIKRTYDIYHGALAELIQLLGAGKINEFFDQPTQSYQDAFEKQYMAYMQQNDRLYDIAVEDNNSSYNQAMWVLVSVLIAVLVVIIAVWFGIKLSLIAPMNRLIESIRHIASGDLVKRIDVEGSNEMGQLAENLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDIASSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVSRVDVGSTLVESAGETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNASLVEESAAAAAALEEQASRLTQAVAVFRIHQQQQRAREVAAVKTPAAVSSPKAAVADGSDNWETFLast
1 -121.000IDP01089 gene: tsr; methyl-accepting chemotaxis protein I STM4533 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MLKRIKIVTSLLLVLALFGLLQLTSGGLFFNSLKNDKENFTVLQTIRQQQSALNATWVELLQTRNTLNRAGIRWMMDQSNIGSGATVAELMQGATNTLKLTEKNWEQYEALPRDPRQSEAAFLEIKRTYDIYHGALAELIQLLGAGKINEFFDQPTQSYQDAFEKQYMAYMQQNDRLYDIAVEDNNSSYNQAMWVLVSVLIAVLVVIIAVWFGIKLSLIAPMNRLIESIRHIASGDLVKRIDVEGSNEMGQLAENLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDIASSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVSRVDVGSTLVESAGETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNASLVEESAAAAAALEEQASRLTQAVAVFRIHQQQQRAREVAAVKTPAAVSSPKAAVADGSDNWETF 553
2 -119.000IDP02460 gene: cheD; methyl-accepting chemotaxis protein [Yersinia pestis CO92] YPO1675 [Yersinia pestis CO92]  ali follow..  68  1MFKRMKVVTSLLLVLVLFGALQLVSGGLFFKSLQNDQENFNVLQVIRQQQSVLNESWVYLLQTRNTLNRAGVRYMMDINHTGSGPTVKDLISSAKGTLSVAEDRFKRYEKIPQNSSQDPEGAKKLKQSYEEYFSALTELINLMETNKINEFFNHPTTSFQNEFEQNYNNYLTQNDGLYDSAVEDSNQSFSFAMGVVITVLVVVLVMMLLVWLGMQQILIHPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVLSVDNSNSTSDKQPTQEMNSTAKKALGNNLQDNWETF 557
3 -116.000IDP02090 gene: tcp; methyl-accepting transmembrane citrate/phenol chemoreceptor [Salmonella typhimurium LT2] STM3577 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  53  1.MKNIKVITGVIATLGIFSALLLVTGILFYSAVSSDRLNFQNASALSYQQQELGGSFQTLIETRVTINRVAIRMLKNQRDPASLDAMNTLLTNAGASLNEAEKHFNNYVNSEAIAGKDPALDAQAEASFKQMYDVLQQSIHYLKADNYAAYGNLDAQKAQDDMEQVYDQWLSQNAQLIKLASDQNQSSFTQMQWTLGIILLIVLIVLAFIWLGLQRVLLRPLQRIMAHIQTIADGDLTHEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSIYTGAGEISAGSSDLSSRTEQQASALEETAASMEQLTATVRQNTDNARQATGLAKTASETARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTQQNASLVEESAAAAAALEDQANELRQAVAAFRIQKQPRREAS-----PTTLSKGLTPQPAAEQANWESF 547
4 -112.000IDP01047 putative methyl-accepting chemotaxis protein STM3152 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  41  3LLQNFTIRMVMLTILGLFCLLWSGVGLYSVHALSEVSEGNDIDRHLVRQMTVLSQGNDQYFRFVTRLSRAM---------DVKIGGGTPDFAPARQSLENMRQKLEEMKALSPGPMNPDISREVLSNWQALLEKGVVPQMQLAQQGSLTAWASTVTPALSRAFGASAERFSHEAGAMLDNTRVMVDGKTYTIRILLITAVILGIAILIFTDRYLVAMMVKPLERIRQQFQRIAQGDLSQPIEALGRNCVGRLVPLLRAMQDSLREAVSTIRAGSDNIWRGATEISTGNNDLSSRTEEQAAALEETAASMEQLTATVKMNAEHARQASQLADAASLTAGKGGELVSDVVETMNGISASSQQIAEITTVINSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAGAAKEIEALIGESVRRVAQGAQLVQETGATMDAILRGVTEVTTIMKQIASASEEQSKGISQVGVAITQMDSVTQQNAALVEQVSAAAAALERQTEDLQRSVQQFRLSASEPQQRVTAK--AAPGVQRMASAPAQSTDEWVSF 547
5 -112.000IDP01940 gene: trg; methyl-accepting chemotaxis protein III [Salmonella typhimurium LT2] STM1626 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  43  15FLHHIRLVPLFSSILGGILLLFALSAGLAGYFLLQADRDQRDVTDEIQVRMGLSNSANHLRTARINMIHAGA-----ASRIAEMDEMKANIAAAETRIKQSQDGFNAYMSRAVKTPADDALDNELNARYTAYINGLQPMLKFAKNGMFEAIENEQAKQLDAAYNHVLLKAIELRTERARLLSEQAYQRTRLGMMFMIGAFTLALVLTLMTFMVLRRTVIQPLQQSASRIERIAAGDLTMADEPTGRSEIGRLSHHLQQMQHALQQTVGAVRQGAEEIYRGTSEITAGNTDLSSRTEQQAAAIEQTAASMEQLTATVKQNADNAHHASKLAEDASGKASRGGQMVSGVVQTMGNISTSSKKISEITAVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLIGASVSLIEQGSEEVIAAGSTMNEIVDAVKRVTDIMLDIAAASDEQSRGIVQVSQAISEMDRVTQQNASLVEEASAAARSLEEQAARLTQAVDAFRLHDTGATMRSSF......................... 540
6 -108.000IDP02076 putative methyl-accepting chemotaxis protein [Salmonella typhimurium LT2] STM3216 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  33  3.LHNIKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQNIITNDYPTTVKANLLIDNFND-------FIIAQQLMLLDEEGRWSQSSQKELDEISQRITALLDELSSNR-HDAASQKIITEIREARQQYLESRFRILQDIQSHNRQAAMMTRTVQVQKVYKDKVQELIAVQDAQMHNAGVQVEGDFKTNRTLLITLALISIAAGCVMGWYIVRSITRPLDEAVRFAEAIADGDLTRHITTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTAAAQIVAGNQDLAARTEEQASSVEETAASMEQITATVKNTADHTSEATKLSAGAASVVKNNGEMMNQVTQKMRVINDTANRMSDIINIIDSIAFQTNILALNAAVEAARAGEHGRGFAVVAGEVRQLAQKSASSASEIRNLIEDSTSQTQEGMHLVEKASALINGMVDNVEEMDVILREIGQASREQTDGISQINSAIGLIDAATQQNSCLVEESVAAAASLNEQALHLKELVNVFRVREEDTQPA............................ 521
7 -94.700IDP01957 putative methyl-accepting chemotaxis protein [Salmonella typhimurium LT2] STM1657 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  33  2.................................................................................................................................................................LRNISVRTCIILFMVCAFLLVDTLQIAFLHDLPILITCNIIYLISALLLWWYMTCYLVVPINTVKKSIEEVAAGNLSIHISEFGNNCAGRLIPGINSLSENISALVREIRSSSQTAMTLSEQLAARSLSLSVKTEQQSASLIQTAASIDEMAASTKNNADNTRMASIQADCATQCARKGGELMVRVTENMRSITDCASQMTEIISLIDGIAFQTNILALNAAVEAARAGDHGKGFSVVAGEVRNLAHRSAEAAKSIKALIDVTHDNVRQGAAIVQEAEKNMQEIVGGSGQLNVLMSEISTTTREQEKGINQITLALSDLESATHSNVLMVEALSASSDVLKAQVIELQTKTDKFRLSQPGYSEHALSHSHVSSLSTITRRGQA......... 384
8 -94.600IDP02252 gene: tsr2; putative methyl-accepting chemotaxis protein [Yersinia pestis CO92] YPO1229 [Yersinia pestis CO92]  ali follow..  49  259......................................................................................................................................................................................SQATAGIHSLLTTSLVTLVIIIFISAGVIALITQRALTPLTHIQQAMDAISSGDLTQRLPIEGRDEVAQIARSFNQFADKLSLVMAQIRGTSESVRVAANEIAAGNQDLSGRTESAAASLQQTSAALEQISATVAQSASAARQANNAVFSASEDASRGGDVITKVITTMESIEKASGKIGDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRILAQRSAQAAKEIKALIESTVSSVASGSSQVRQASNAMTDIVSSVSDVTTIMSEITNAADEQMRGIHEINSAVAQLDTMVQQNAALVQESTAASAALQAQAADLTDTVNQFKI.................................... 595
9 -56.200IDP01485 hemolysin secretion protein HylB VCA0220 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  21  2IINKFSLKWMLAIAVAIPAIALLFVAFTSLNTMSVMQAQSNSLYANTAAPMRAMAEATSRIPRMRV--GIDMMLLQETALKDAKGVLKRVEEARTEDIPEMRQAMQVAVDSQVNPELKEQARKLQARFEQMVREELEPMLQAFANNDMTTAQNDKYAPTYGEMRKQANQILDTLLQQAEQQNHASVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVINKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL.................................... 548
10 -53.900IDP04179 methyl-accepting chemotaxis protein [Vibrio cholerae O1 biovar eltor str. N16961] VCA0068 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  22  4LLSGLSIKLQVVVPVFFTLLLLIIGITFSTSSLKTAFHQVTVSTEQLITDKDNLTTLIDNTYAMRISAIYSLF---------RPAEVTALPNVLKEKQTENLALLRSLADNPELKNEVAGLTQAMQRYVDYSIQTMIPLLNIEHS-AQYEQATAEYRKVGNEMIKAIDVLSNRLNQVAMTTIDESEHEHDSVMSQSTFALIGILLVAALSSWLLAGIIVTPIRQLQQTVREIAKGNLLVKAQEEGNNEITLLARDVNATVTQLRQTVESLVRISTDVASASTELATVMTQASVNSDQEKQEVEQVASAVNQLQSTAQSVTDHAHSADGAAQQANQLASQSLRMFEESHRATAKMADQSERIGNVTEVIRSISEQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQTSTQEIQAIIESSLSLLEQNQSLAAKVSASLTEINHSISALGQINAQVATASEEQSQVTKDINRNLSNIYELVSQNVTGITQSAAASHELSDLAEQQHQQLQYFRV.................................... 547
11 -53.300IDP91343 methyl-accepting chemotaxis protein [Vibrio vulnificus CMCP6] VV2_0072 [Vibrio vulnificus CMCP6]  ali follow..  27  174........................................................................................................................................................................................................GLGIWSLLLLSVAISYSSTRRLESLSAEARKVFDNPLMELVYNKKVDDISEIKLALKMRQSELNAVVGRIQDSNQQLIDSARNSSSNSDKASHNLKGQTHETEQVAAAITEMHSTANEIAQNAQSASDATDQAHSAASEGMITVQDTVKAIKQLAQHGKTIGDVLIIIQGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAQRSHESTEEIQKVIGEGTHLAEQCVSSADSSGQKLQILLDQVTDISDRNNQIATAVEEMARVTEDMSSSVQSISDACSATNVLSSDTCHQCNALVKSLDSQGKLVSQFR..................................... 517
12 -50.700IDP95280 methyl-accepting chemotaxis protein [Acinetobacter baumannii ATCC 17978] YP_001085820 [Acinetobacter baumannii ATCC 17978]  ali follow..  29  293.....................................................................................................................................................................................................................EYDRNQNAILRLLDEIADLADGDLRSYATV-SEDFTGAIADSINFAIDQLRDLVSRIHETSQEVARYTQDTQSITNQLAEASEHQAQEIAGASTAMNEMAQSIDQVSANASESAEVAQRSVQIASNGAQVVNRSIEGMDTIRESSQEIGNIVSLINDIADQTNILALNAAIQASMAGEAGRGFAVVADEVQRLAERSASATKQIETLVEQTTTEVVRGANLAKDAGIALDEIQKVSGDLAKLIASISDAAKLQSASASHIATTMTVVQEITSQTTTATFDTARSVSELANMAESLRESVTDFKLPD.................................. 625
13 -39.300IDP95064 methyl-accepting chemotaxis protein, partial [Campylobacter jejuni] AGM39603 [Campylobacter jejuni]  ali follow..  22  2....................................................................................................................................................................................................................................................GSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQAALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIANSINASLRNITESVDEITNVINLIKDVSDQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEKTQKATTEVEMNIEQVEKISIDSNAHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQLADHTSC........................................................ 282
14 -34.500IDP01046 putative methyl-accepting chemotaxis protein STM3138 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  1..........................................................................................................................................................................................................................................................................MFKKVLGLRHWNNNVVKIPPPAAESGANASDVVVDTPEPYETIDIIRNAIIKSCEQLNIEKERINELNEQNDKARSSLKSLVEFITEINTSLTQINACIKEIQKIANQTNLIAINSAIEAARVGDAGRGFSVISKEVKNLSEDVKHSSKSVSTLTDNQQPVIDNITTNINQIVESIGIVIDKSLSMKSVMQYISTVQFLNIVKVDHVIWKMEVYKLLLNKDIN................................................................ 263
15 -27.500IDP91610 gene: ECs4554; EspB protein [Escherichia coli O157:H7 str. Sakai] BAB37977 [Escherichia coli O157:H7 str. Sakai]  ali follow..  13  31..........................................................................................................................................................................................................................................LSIDSSLLTDGKVDICKLMLEIQKLLGKMVTLLQDYQQKQLAQSYQIQQAVFESQNKAIEEKKAAAGILGSFAAMNNAAKGAGEIAEKASSASSKAAGAASEVANKASAMQKAMATTTKAASRASGVADDVAKASDFAEDLADAAEKTSRINKLLNSVDKLTNTTAFAVTSLAEGTKTLPTTISESVKSTHEVNEQRAKSLENFQGNLELYKQDVRRTQDDITTRLRDITSAVRDLLEVQNRMGQSGRLA..................................................................... 311
16 -21.400IDP92066 gene: GAPDH2; apicoplast glyceraldehyde-3-phosphate dehydrogenase 2 [Toxoplasma gondii] ABO93620 [Toxoplasma gondii]  ali follow..  12  200.....................................................................................................................................................................................................................................DAASSGTCSESSDAAFAPEFSDLRDLFFGACDAT---------VSPDDLPSVPEALEKLAGLESDVQARGDQLDEKEKVVAEYLVAAQEAAVRHEEASRAFEDAKR--NKKENLAAAAEKAALEAAAEYADLTTAAQLVTEEAEQESAKA------LADAVAAGDLRFAINQKIVNEAGPEARGKVPRALLAPKHVRISDPAAGRVLKIFFHNNFAPFEDLPCAALHADAHLCRQHPRCVVQVEQSGDEVLQRCLLDEAYLALLTKTPDFCAAAPAEAETGLGNSAAQATGTPVSPFAGAA....................... 483
17 -13.300IDP04691 sensory box histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA5067 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  292.................................................................................................................................................................................AMASLQPVDEAVQMVQDYYIYIIAFVVVLIFLASFYYSKQIAKPLLKINDTTKKIAHLDFTEQIPITSKDEIGDLSKNINTLSNKLNSHIGQLEQDIEKE----RKLEKTRKEFISGVSHE---LKTPLSIMKSCISILKDGVAEHKKEYYFQAMERE-VDKMDTLILDMLE-LAKFESGTYKMKYIDTVMEAICEHLSVEIEKKELRVHKHIGP----FEVVANQGRIEQ--------IVNFITNAIRYTPNKEDIIENKGTHIEE--EQLDKIWDRFYRVDAARQRSQGGTG-LGLAISKNILELHDAEYGAENTEDGVLYLPKKA................................................ 617
18 -13.000IDP04672 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA1482 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  268.................................................................................................................................................................................AIASLQPVNEAMLVLKDYYVYALIIVFLVIILLSFYYSKIIVKPLIKINRVTKKMANFDFSEKLPVTADDEIGGLSGSINTLSVNLKDRIDRLNVANTKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIKDGV--SKDTTYYTDVILEETENMNRLIVEMLE-LAKLESGTYKLDSIGELIQQVYTKLLFSMEEKHLQVNIDVNSS---IFVKANRSRIEQ--------VVNLLSNAIRYTPEGEKIIENTGNPIPE--ESLEKIWDRFYRLDASRSRHTGGTG-LGLSIVKNILDLHHAEYGVYNTTNSVV...................................................... 591
19 -12.800IDP04182 sensor histidine kinase [Vibrio cholerae O1 biovar eltor str. N16961] VCA0238 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  17  189.................................................................................................................................................................................TSRYEEAALDALSNVRSVITSLAVFGMVSGALLGVWLLRTLSKPLAELVKSTTALEQGRLDHRISISGPDELKTLARHFNYMAQSLEQAQQKERMSRQLI---EREVADRTQELAQALQT----LEKAKHQQKEFFANVSH--ELRSPATAILGEAQITLRSRHNSDDEYRQTLLRISESAEQLAFRIELLMLIRHDERLFHPAAVVRQASLLTHAQQVELCYTDCDKLLM--------IRILVDNALRYDPTQQPILVDQGIGIAE--ADLSVIFERYFRAENGKRYRPDGLG-IGLTLAQ---VKQLDGEIRIESVLEQGT..................................................... 531
20 -12.400IDP04331 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2181 [Clostridium perfringens ATCC 13124]  ali follow..  9  162.................................................................................................................................................................................AITSFQAIEEASALIKDFYKYIILIVIVIGLILSYVFSNLISKPLVKLNKSAKKMSAMDFSEKCDIEREDEIGNLAKTLNFLSKNLSNALDDLKIKNKKLEEDIEKERELEKLRKDFIAGASHELKTPIGIISGYAEGIKDGIVDHKDQGVYLDIIIDEAEKMNKLVMDMLE-LSKLEAGKIDLHSLTELTEEVLVKNSVDINKNNLTVVKNYSPTEDLYVQGDDFK--------IEQVLTNFVTNAIKYSEPNNQIIENTGAHIPD--SDINKIWTQFYRGDTSRNRGSRSTG-LGLSIVKNLLQAHESEFGVMNTENGVK...................................................... 490
21 -12.300IDP04664 sensor histidine kinase/response regulator [Bacillus anthracis str. `Ames Ancestor`] GBAA0996 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  5..AKFSIRYKIMAGYLVIILFLLISFIMLNNQISNLQKSRNFIIDHDFKVLNLTNQVEKDLLTIENKAKGFIT-----------SNNANYLQSLNSAERDYEKHYHDLFSLLEDNPSQQEKLKEINGNITNWMNKEIHPLIANHNSNKIQEIDTTE---IQSLQSQLTDFRSTEEQLTKKRAAQLDTKNNKLELWLYSLLFLLSCISIIVSLYISNSITKTIKNVIQAIKSISSKEITERIHVNTHDEIKDLAHTTNHLLDEISK-----REWLQTEIAELILMYQGVSSIEMLGNKILSGIIQKTQTSCGAFYVREEYEETASFADQGFDIGKQSIKMGEGFIGQSA-ILRDIPEEFRYVTTGLLLVIPVLFEDEVIALEEKASELLRSSKYKSLANMSHELRTLATVIHSSGKDLLTLINDDLSKVEAGKLDVIFEATNISDMAASMHQNVEDSDTIPDLFYTDAKRIEQISNAF----KFTEKGSVSLHFDSIETSNLSHDMQSISKDWITISVKDTG................................ 667
22 -12.300IDP04543 sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] VC2453 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  178...................................................................................................................................................................................................AGLVLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAM---------------------AVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARLANMSHELRTPLNGVIG-MLKTLQTIEKSANNLLTIINILDFSKLEAGKLALEVNLQATSAHEKGLEITLIDPKIRGVVGDPLRIQQVLTNLVGNSIKFTERG------------NIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLQAFSQADASISRRYGGTGLGLV--TQKLVSHMG........................................ 495
23 -12.200IDP04484 gene: barA; two-component regulatory protein [Yersinia pestis CO92] YPO3381 [Yersinia pestis CO92]  ali follow..  12  179...................................................................................................................................................................................................STLLLLFCMCVAILFAYRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGHMLGELDILKNGINSMAMSLAAYHEEMQQNIDDLRETLEQMEIQNVELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKT--------SLTPTQTDYLQTIQRSANNLLCIINVLDFSKLEADKLILEIILLAHTAHEKGLELTLINNDVDQVLGDAMRLQQIVTNLLGNAIKFTEEG------------NIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLQAFRQADASTSRRHGGTGLGLV--TERLVKEMG........................................ 496
24 -11.900IDP04495 sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar eltor str. N16961] VC0622 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  392......................................................................................................................................................................................KEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVSAGDLDEMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNKELESNLLIIRKQNDELQLANKLKDEFLATTS---HELRTPL--HG--------IGIAEALISGANGPISAAHKYQLDIIISSGQRLATLVDLLDYHKMRYGALDIRLVLELSHHLLGKKTLRIVSEQPVWVSADPQRLEQVLYNLIGNAIKYTSEGK--VVDTGQGIPA--EQLEHIFEPLIQAGHDASRYRQGAG-LGLSISR---------QLIE-----HGTLYVSSQPMVGTTFSFTLPLASEEEIAQARLTELPHFQAPEVLDSELPEQ.... 760
25 -11.700IDP04438 gene: cpxA; two component sensor kinase [Yersinia pestis CO92] YPO0073 [Yersinia pestis CO92]  ali follow..  13  151......................................................................................................................................................................................SPQSDFINLMFDRPLLLLIATMLISAPLLLWLAWSLAKPARKLKNAADDVARGNLKQHPELSGPQEFLATGASFNQMISSLDRMVVAQQR----ISDISHEL---------RT---------PLTRLQLATALMRRRHGEGKELERIEMEAQRL----DSMINDLLSRSQHKNELHREPIKADELWSDVLENAQFEAEQMGKTLVVTAPPGP--WPLFCNPAALDS--------LENIVRNALRYSHHHIAVVDDDGPGVSP--EDREQIFRPFYRTDEARDRASGGTG-LGLAIVE--TAVSQHRGWVKAEDSPLGGLR................................................... 446
26 -11.700IDP04694 gene: yycG; sensory box histidine kinase YycG [Bacillus anthracis str. `Ames Ancestor`] GBAA5714 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  172.................................................................................................................................................................................VVASMEDVYKQMKDINQIFATGTVIALLVTAVLGILLAQTITRPISDMRRQAIEMAKGNYSRKVKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDG---IATDRKGDIILLNDPAEKMLNVSTALDQSVLEVLGIQEEFTLDHLYEEPDSVLLDFSTRSFSVIQKETGKANGLIAVLYDVT------------EQERIERERREFANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVIQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVL......................................... 503
27 -11.400IDP04012 gene: virJ; sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2355 [Clostridium perfringens ATCC 13124]  ali follow..  11  163......................................................................................................................................................................................SKEYLELRDLMSNIKFIVSITFLLILIFTYFLFERIINPLNYIKNSFKRIGDGDFKINLKVNSKDEIGDLACGVNKMANKIEEQIEKINEEKEKVLTLE----------KTRTEFFNNITHELKTPLTNISGYAQIMSEEDFHDNDFRKFALERINKESKRMHELIVSLIEISKNKSENVNLKTLIEDLCEDFKVKGDKQGICISNNLED----IEFMCREDEIRR--------IINLLDNAIKYSIKGSEIIENLSDEISS--EGVEKIFEPFYRENTKKSRELGGNG-LGLYICS--ELVKKYGGDISFNYSNGKV..................................................... 475
28 -11.400IDP04673 gene: resE; sensor histidine kinase ResE [Bacillus anthracis str. `Ames Ancestor`] GBAA1498 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  158.................................................................................................................................................................................VYESLQVPIQGMERTTDFIFLSAGIAIILTTFFAFFLSTRITAPLRKMREVAFEVSRGKFDAKAPMVSQDEIGELATALNQMGKQLKFNMNALQQEKEQLASILSSMADG---ITLNQEGEVVVINPPAEHFLQVWQEEKEIELSKKLPSELVELFHLVVESEQQQVVGINLQKGNYVVLMTPLYN--TKIRGA-----VAVLRDMTEERRLEKMRQDFANVSHELRTPMVMLQGYSEAILDDIVQTKEEINEFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQIAKDKEVALTVDFKDSIEQYPFDADRMEQVL......................................... 486
29 -11.200IDP04132 putative two-component system sensor kinase [Yersinia pestis CO92] YPO2997 [Yersinia pestis CO92]  ali follow..  11  156.......................................................................................................................................................................................................IWMGVLGGLFFSTLLAWNLTRPMRQLRVGFERVAQGDLSVRLLRRRHDELTEVARDFDSMAERLQALVSAREQ----LHDVSHELRSPLARLQLAIGLAHQNPDNVDNALQRI-------EHESERLDKMIGELLALS--------RAENHSLADDDEYFDLQELVVVVNDARYEAQLPGVEIQLEVAAQSE-----YTVKGNAELMRR--------IENIVRNALRFSASGQQVKVTLSALDKRYQIQVNKLSSIFDPFVRVKSAMSGKGYGLGLAITH--KVILAHGGQVEARNGEQGGLV................................................... 439
30 -11.200IDP95472 sensor histidine kinase [Listeria monocytogenes 10403S] YP_005962624 [Listeria monocytogenes 10403S]  ali follow..  12  156......................................................................................................................................................................................SGTEQVIGTINRYMFYTILLSITVALILSAILSKLQVNRINKLRAATKDVIQGNYNARLKENNFDEIGALAIDFNKMTQTLETSQEEIERQEKRIADVSHEMRTPLTTISGLTE----GLVNDIIPKSETDRCIALIDTEARRLTKLVNENLDYE----KIRSNKIKLQKTRFNGKEFLELIKEQLDYVASEKGNITVAIDKDMAIYADYDRLTQVFINIVKNSVQFTENGQITLTGTQDYKESVLT-----ITDTGIGMNT--EELEQIWERFYKADMSRTNTAFGESGIGLSIVK--QLIEYHDGSITVTSEPNKG..................................................... 461
31 -11.100IDP04165 sensor histidine kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC1521 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  309......................................................................................................................................................................................WPFLKAYVTNILEVGIITLFLLVISGLFVYRGSRDLFRPIERIHRVVKMVQLGKNQGQIGLDDKHELAQLAKQFDNMLDQLQQRNEEIVQAAHELEAKVQSRTASLQEKTAQLEHHIALLNQTRNKLEKLAALGELTAGIAHEINNILGNTELIRFELGADASRVEEEIDAILLQIERIRNITRSLLQYS-EITWQHVNPIIDESKTGSKKRDIEFVLKAHNSVEVNRHQLLQILVNLQMNAIHAMNGKGRIIEDQGCGIKP--ENLKRIFD-------TTKREGTGL---GLSVSQ--SLLSQSGGEIKVQSELGVG------------STFSI.................................... 660
32 -11.000IDP02181 two-component sensor/regulator [Yersinia pestis CO92] YPO0256 [Yersinia pestis CO92]  ali follow..  17  289.........................................................................................................................................................................................WEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLRRKSDHLTTISHEIRTGAVELLQNTPGQMRLAETAHQCSLSLLAIINNLLDFSRESGQMTLSLEKTALL--PLLDQAMLTIKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRGCGIDVQHQQTIFQPFMQTSDHE------------QGTGL----GLAIA------DNLAKMMGGHLTVFSEPGQG.................................................................................... 605
33 -10.800IDP04430 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA4921 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  171................................................................................................................................................................................................PILFVSLLLLAILLIGLLSYLVSRSVIKPIFVLKDATGKIKEGNLDFHIPVTSHDEIGQLNQGFEEMRKKLKESIEMQTQYEENISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLS--EGIEVNLQLHASPLYVTA----DCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVI-----VMDNGSGIES--DTLPYIFERFYRAEQSRNSSTGGSG-LGLAIAK--QIIEEHGGNIWAESELGEGTS................................................... 471
34 -10.800IDP04247 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_1402 [Clostridium perfringens ATCC 13124]  ali follow..  11  161......................................................................................................................................................................................NPKIGFKIFVYIMISLYIFIFTMSLILYSKLTSKTFTKPLDKLMNGVRKLSLGDYSTRINIEKNNEFEELGEAFNNMASKIEEEKKLKEKSEKLVRNIAHDLKTPLSSIIGYSNIIKNNPDIEKESLHKYISVIENNGERANE-----------------MIMELFE-FYTLQSSEFILQDLSEFLRNLIYIYLLEEKDFDFDFEISEDD----LYLEFDNKRLER--------IGNLIINSVKYNKKGTKFVSDDGIGLSE--EIKKHIFNPFVREEKSRNSKKGGSG-LGLTISK--EIVEKHGGTIYLSDGPLKGCN................................................... 470
35 -10.800IDP01908 gene: ssrA; sensor kinase [Salmonella typhimurium LT2] STM1392 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  287.........................................................................................................................................................................................NRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTL--------------------------------QVQYDNLENKVAERTQALNEAKKRAERANKRKSLTVISHELRTPMNGVLGAI-GLADTARNCTLSLLAIINLLDFSRIESGHFTLHMQTIQGPAQSKKLSLRTVGQHVPLYFHTDSIRLRQI-NLLGNAVKFTETGG--VSDSGKGIEI--QQQSQIFTAFYQADTNSQGTGIGLT-IASSLAKM-----MGGNLTLKSVPGVGT..................................................... 604
36 -10.600IDP04352 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA0584 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  179......................................................................................................................................................................................SFLENMLLKLMKQFLIISVLTIILTTISVFIFSRVITEPLIKMKRATEKMSKLNKPIQLGIKRNDELGSLAKTIEDLSSELTY-MKKERG--EFLASVAHELLTPLTYMKGYAK----VAKRDSLTKEEREEYLQIIEDETDSVTDLVQDLFMLVQLEQHQFVIKKQKVL-----RPFLERMVEKTKTTLTNKQMLHVYCKDDLEVCIDERRMEQVMLNLLHN-AYQHSLENTTITIRVLAETNSFT----SVQDEGEGIPE--GDIPHIFDRFYRVDKSRTRATGGKG-IGLAVAK--EIVELHNGSILVTSKLDVG..................................................... 477
37 -10.400IDP04007 sensor histidine kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC1319 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  133.............................................................................................................................................................................................QAIDRADNLLFVFMLGGFALYCMFLIWFLSRRLRELERVTHDFANGNLQARASTKSSKSVGKLNHSFNMMADKISHLILSNKALTNAI---AHDLRT-ESQLNAKQQQQVASIIEDTEEMETMVDELLYYAKLEHPESDIQSQYLEVN----QWLADFIDEQSHLDADPQLLTRALVIRNAEKYAGDRLLIEASTVDAKL-DNGPG--IEEQHWPHIFDA-----------TDSSRNKAQSGFGL----GLAI------VKQIMARHQGEVTLTKSPLGGA................................................................................... 420
38 -10.400IDP04347 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2345 [Clostridium perfringens ATCC 13124]  ali follow..  14  276......................................................................................................................................................................................SNATKVPLLFKVSAFLVSLFLFIIAECVLYIKFKNLSSRMDSLVLAMEKVEKGDIDVHIPLKDRDEITFIADNFNKMCEKLNDHIRKS---------------------------YLAELRQREAEIVALQNQINPH-------NTLESIRMKAICNGDKEVGKMLYSLAFLFRSQVKGNLIVSIDQEIKYCNKYL----ELFKFRYDEKFKFKIECEEDLYDKGIVKFTLQPLIENYFVHGIRLERDDNELKIYIYKHLEDIVVEVEKLDDINRRIRECDHSGKSGMLNVHERI............................................................................ 546
39 -10.400IDP06113 histidine kinase sensor protein [Helicobacter pylori J99] NP_222872 [Helicobacter pylori J99]  ali follow..  12  115...................................................................................................................................................................................DEHFVLYKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLRELRSQVKRFAQGDKSVSCKSKQKDEIGDLANEFDNCIQKINAMNESRVL----LRSIMHELRTPITKGKILSSKEELSCKRFSSIFDHLNMLI----EQFARIEQLASKNYGSNKEKFLMSDLIDKIEKMLLIDEDKKSPIHVSSSNYIIEADFELFNMIDNAIKYSDDKQVFLDFIGNNLVVSNKSKPLKEDFEKYLQSSNPSQAHGFGL----GMYI------IKNALEAMGLNLSYHYSNGRICFTIHDCVFNSFYDLEADNEELPPPRKFERGEGNEGNRKSQL.......................................... 440
40 -10.400IDP04428 gene: phoR; sensory box histidine kinase PhoR [Bacillus anthracis str. `Ames Ancestor`] GBAA4832 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  147.................................................................................................................................................................................VKSTIEPLKDVHQKTWGLLIIGFVIACLVVVFLGMKITGQYIRPIESVTKVAIELAKGNYKARAYESHSDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSG---ILIDSRGYINLVNRSYKETFHVTEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLGIFEVYGAPIIGTNHEWKGI-----VLVFHDITELKKLEQMRKDFANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIF......................................... 481
41 -10.400IDP04515 putative sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2673 [Clostridium perfringens ATCC 13124]  ali follow..  10  276....................................................................................................................................................................................................NRYLWIIPIVLVIHFIVKFIRKYDGLDTVIKGIEKVKKGDTDIEIKDNDDRQIRELADDVNDLRLGYKELVEE-KLKTELISNVSHDLKTNYVNILQLNNIKEEERKEYIEILDKKSQTLKKLIDDLFEVSKMSSGKVELFKYNIDIIQLVYQCIAEVEDVYSE--------KEIEFKING-------------------CMVKIDPQRM-------SRVFQNLTTNALKYSLEKTRVYVEIKDLENYVEISFKNISSARGDESRNSTIEGSGLGAIAKTIVEL......................................................................... 553
42 -10.300IDP01736 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA5503 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  154......................................................................................................................................................................................TGEKEVLTNVGWTFLMTSLCLVAAGIFFAIRLAKSLHKPIDQLRQMAHRLANGDYKSKIELNEYVEIAQLSASFNAMADGIELHIKQLKEEKEKLDRITHELKTGYVDLLKAKEDVKESLRYVAVESERLLSLVEELLKSSKGTSTFEISPTVVNIK--ELAEEAVSIVKPVVADFDKTKQIF---------LNVL--DNAIKYSDATQHDDGIGIDEGVLAEWNES-----------PEGKILPSSYGHGY----GLYI------CQEIMDK-GSMRIESSEEIGTTIFITFLLPRRMEDIKNLKAV............................................................... 475
43 -10.200IDP04104 gene: rstB; two-component regulatory system, sensor kinase protein [Yersinia pestis CO92] YPO2309 [Yersinia pestis CO92]  ali follow..  15  123.............................................................................................................................................................................................HQMRLLDLALLILIGLSLALPVFLWMRPHWKDLLKLENAAQRLGSGHLDERTHFDPTSSLSRLGVAFNQMADNINTLIVSKKLLIDGIATPLVRLRYRLAMSDNLTESEQQALHHDIGQLEALIDELLTYARLDRPQVSLNLEPIDLP----AWLTTKIMDIRSIHQERE------------------IELDIPHRGDFGAVDLRLMERVLDNLVNNALRYSHQRLRIGLWFDGDNACLQ-----VEDDGPGIPP--EERTRIFEPFVRLDPSRDRATGGCG-LGLAIVHSIALAYQGSISVNTSPLGGASFR................................................... 409
44 -10.100IDP04189 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0225 [Clostridium perfringens ATCC 13124]  ali follow..  10  163...................................................................................................................................................................................LINTEAYEILRNTLTIFIISGLIAIVIAIFLINTFAKELVSPLMILKQKSKNISEGKFKEELHITSGDEVEDLANTFNIMSENLDKYINEIKSAKLHFDNVSHEFKTGFSEILNDKEKIVQSSALIEKEGKRLLNLVEEILLLAKNKNTFEIEYTYIDVK--SLIEDCLKILK-IYGDHDKTKQVF---------INII--DNAIKYSGCE--------------TLSISTKRSPNKMEVIIEDDGTGFIIKDEYVNPKGNGLG--IKICKDIMQS-YGFNIESELDVGTKVTLSFSIGKNNEIKEEDF................................................................. 474
45 -10.100IDP04667 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA1313 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  152......................................................................................................................................................................................KSIKDLIYDMGLILAPLALAITLLTIWIGRKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETE----VKRKEFLANVSHELRTPLSYIKGYSE----AILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIV-----SQLIEDVLDTYEIKFIEKKIISTNLNPEIIVMIDEDRMQQVLHNVLDN-AIRYTNQNGDIMITLRQIDDYCE-----IKDTGIGIDT--EHLENLGERFYRVDKARSRQHGGTG-LGLAIVR--QIVHIHDGQWQIESEKGNG..................................................... 450
46 -9.960IDP04158 sensor histidine kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC1088 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  141......................................................................................................................................................................................SYLEQQLAHARKWTLLIVLGEMGLVALFSYLLGNALTRRLTELKTATDQITFGNREVLLEIQGHDEISRVAHSFQQMVQSLRHSEATMRDYQHQLEQWNLELED---KVNQRTETLLAKNQQLEEMNTKLTLMKDKLVETEKMIS-IGTLAAGFAHEINNPNGALKSHLQLLQQDFNQLKVGFEQID------ILLSGSDFHGKFTQTKNALYLEESFSGIEESLRDALHCVDRIKTIV-DKVQRCQAEPALHDSSWVSPLSLVEQAIQICGLREWVVWK--EQTLYPPLIYCYSNDFVTALSANAAYASDDPMIRIELSLRHDHQQLEIEV....................................... 464
47 -9.720IDP04662 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA0650 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  148......................................................................................................................................................................................ESIEKLVNGLTKQFIIAGAITFLLTVITIFLLSRLLTKPLLHMKHATEKMSKGDLSVSLTTTRNDEIGELSSSIQTLANDLHYM----TERSEFLASVAHELRTPLTYVRGYAD----IALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVH-----HTFLTRISEKVNAMYKERYIVSFSCPPTLLVNLDEQRFEQVVVNILNN-AYRHSKEHSQIHISVIEENKRIS----TMEDEGEGIPP--EDLPHIFERFYRVDKARSRATGGTG-LGLSIVK--EIVELHGGNITVTSEVDHG..................................................... 446
48 -9.680IDP04191 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0554 [Clostridium perfringens ATCC 13124]  ali follow..  13  291......................................................................................................................................................................................DFINADIQSLRKEMTIIGLLFTLVVLIFSYFLYSSIKVPLYNLLNKMKRVSEGDLKVLVNDTYEDEIGVISDNFDSMLKRVNELIEKTKL---------QEVEKRDLEIRMQAQINPHFLFNTLNSLKWT-ALMNQDYTVSEGLSSLAELLRNTIIDKNELVT--------IREELENIKNYVVI-NSFDVQYEVFILQPIVENS---------------IHGIDENKENQKIIIKIMSEEENILIS-----IKDNGKGFNS------------KEKVKDNKLSGIGWNNVDERI............................................................................ 553
49 -9.660IDP04550 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0460 [Clostridium perfringens ATCC 13124]  ali follow..  11  446....................................................................................................................................................................................................IFGVVIYSGILFYFGRKYIDKWKKDYNKILEKTKEISNGNLDSKDDE-DCGFFNPMRDELNNIQKGFKAAVDE-RMKTELISNVSHDLKTAYVDL--KGEEDEEKRKAYLETLERKSQRLKHLIEDLFEVSKATTGNINLNIMDVDISYLMKQVVLELDDKINE--------AGLDMRLSLPEEKVILPL---GQR--------------------TYRVFENLIINVVKYALPNSRVYIDIKEGRENVDVIIKNISEISDRFVRGDKSRNTEGSGLGLAIVK---------SFVE-LQGGKFHIEVDGDLFKAIISF....................................... 740
50 -9.660IDP04542 putative two-component system sensor protein [Yersinia pestis CO92] YPO2000 [Yersinia pestis CO92]  ali follow..  13  153......................................................................................................................................................................................TPYMGTLNEFTRTLIVITAIGVLFVALLGFVIARIGMRPVNKLSEQAQHLAPGNHGQRLDTLTPDELQKLAVAFNGVLERQEIAWRQLES----NADVAHELRTPLTNLMGQTQLGLSR----KRETHELEDLLESNLEELERMTSIVNDMLFLSHAQ-----------AGEHATQLTDVSLREETYKTTEYVEPSFAEKNLSIHVEGD-----ITARIDRRLFHR--------LANLLENSARHAVTGTTVVANIGAPIAA--EHLNRLFERFYRVDSSRARSDTHHG-LGLSIVR--AVAIMHRGDVFASSQNGIN..................................................... 450
51 -9.650IDP92003 sensor histidine kinase [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002775 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  12  39...................................................................................................................................................................................................LLGMTIVASLVGAGISLFLLLPVFTSLGKLKEHAKRVAAKDFPSNLEVQGPVEFQQLGQTFNEMSHDLQVSFDSLEESEREIAQLSHDIKTPITSIQATVE----GILDGIIKESEQAHYLATIGRQTERLNKLVEELNFLT------LNTARNQVETTSKDSIFLDKLLECMSEFQFLIEQERRDVHLQVIPE-------ARIEGDYAKLSR--------LVNLVDNAFKYSAPGTKLVTDEGQGIAP--EDLENIFKRLYRVETSRNMKTGGHG-LGLAIAR--ELAHQLGGEITVSSQYGLG..................................................... 334
52 -9.530IDP04659 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA0272 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  184.......................................................................................................................................................................................IPDGVVMYDTQEGPFPFLIGVLVFIFSFFYITKRKMKQIEAMAEGVKEIEKGNLAYRIEKKGEDEIASLTENINNMAEELMNNIEK-KQKNELITNVSHDLRTPLTSIMGYLRLLRDSKYENKEQHDEYTRIAFAKSEQLKN-----------------LIEDLFE-YTKLTNEQVVLVCVNELLEQLIEELVPQAEEHGLTFVKKFPEER--AYAAIDSEKMVR--------FDNLLMNAIKYSKDDGEIKVSLQRQRWEIQIVIAELASLFERFYKKDQSRSRVTEGSGLGLAIAKSIVELQGGSIRAEY.......................................................... 485
53 -9.530IDP04272 lantibiotic biosynthesis sensor histidine kinase, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA3899 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  17  153...................................................................................................................................................................................................IVLFILLFVAEVIFLSRSFGKSLSKEMMILRKVTDKIQKEDLDFQVEQSKIKEVNEVLTSLVKMKDELNHSLRTQTNRREQIAALAHDIKTGNAELDSNQKKCNEHILKSIDEMEIYMKSLFMQTDLRDFIHNIIEESAICVLGKQNLIENVQDIPNFIPIDETALKRAI---------MNIMM-NAIEYSPTKGDSGRGFTATEQFYRGDKSRNAKDHHGMGLYIAKSFAKQHGGNLYLSNSGAKVVLEISA......................................................................................................... 453
54 -9.490IDP04241 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_1112 [Clostridium perfringens ATCC 13124]  ali follow..  13  274......................................................................................................................................................................................KKITEELIPIIGSTLLIVIFCLIVVVILINILSKALSRRILLLKDKAEDVSKGNFNNPIFTEDTDEIGIVTNSFGHMTRDLNDMINKVYK---------IELEKKATELKAQAMINPHFLYNSLSTIKWK-AIREGNDDISDITGYLAKFYRTSLNNGQDITD--------VKSEIDNIKSYIEI-YSFDVEYRIFILQPIVENA---------------KHGIDCNQGKERGKIIVEFQEDEDSL-----KIYNSSNNNDI-----NSIEEMLNK-----PGKGYGIYNVKERI............................................................................ 540
55 -9.370IDP04343 two-component system sensor kinase [Yersinia pestis CO92] YPO2916 [Yersinia pestis CO92]  ali follow..  10  18.....SLRQLVLMAFLLVLLPLLVLAYQAYQSLDHLSTQAADINRTTLADARRSEAMTSVALEMERSYRQYCVLDD-----------ATLATLYQHQRKQYTQMLVAHAPILPDARYYQTLQGLLNQLTDIK--------------CKNSGPDKEASILLEQFSRSNAEMVQATRDVIFSRGQQLQKDIAERGQFFGWQSLLLFLVSVLLVVLFTRMIIGPVKGIERMINRLGEGSLGNTALFKGPRELRSLAQRIIWLSERLAWL----SQRHEFLRHISHELKTPLASMREGTE-ADEVAGPLTQDQQEVVAILDHSSRH---------------------LQQLIEQLLDYNRKLAEHVDLAEMVGNVISAHSLPARAKMIRTETELDA----RICWAEPTLLMR--------LDNLYSNAVHYGEESGTIWICSRQVNDRVQIDVSEEIMIFEPFFQGSHQRKGAVKGSGLGLSIAQDCIRRMQGDLQLVTVDYAA..................................................... 469
56 -9.250IDP95462 sensor histidine kinase [Staphylococcus aureus subsp. aureus USA300_FPR3757] YP_494944 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali follow..  13  153......................................................................................................................................................................................PDIGETFSEFRTFLAVLLMLLLFISISLVIASTYSIIRPVKKLKLATERLIDGDFETPIKQTRKDEIGTLQYHFNKMRESLQNVSHEIKTPLTHIHHLLSELQQTSDK--TLRQQYINDIYTITTQLSGLTTELLLLSELDNHQHLLFDDKIQVN----QLIKDIIRHEQNFLGNQRLLHQAL---------SNLLI-NAIKYTDVGGASNDGSPISPQAEARLFER--------------KVSKHDNSNGL----GLAI------TKSIIELHHGTIQFTQSNEYV.................................................................................... 445
57 -9.170IDP04302 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2503 [Clostridium perfringens ATCC 13124]  ali follow..  13  153...................................................................................................................................................................................SSLRNVDNFILNFFLVFLVIGLTVLAIGIILSYFLANSIVNPITELIKVSEQMAKGNLKVRNKIVTNDEIEKLADSLNIMAEEIENR----ILKNEFISSVSHEL---------RT---------PLTSIKGWAITLNNDFTDRETLKMGFDIIEKEADRLSNMVEELLD-FSKFVSGKIKLINLKEFIEYLRLYMNPRAEREHKELI---KGITEDFIIVGDKDRLKQ--------FINIIDNAFKFTHENEKIIIDTGCGISK--EELPRVKEKFYKGKNSKSQNGIGLSICDEIIA-----LHEGTLEIYSELGKGTKV.................................................... 454
58 -9.070IDP04076 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA2213 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  142...................................................................................................................................................................................ERLDSLQENLNMLKNVLVIASLLVLIPSFFAGRMLSKFILKPVNSLIQTMEHIQVRGIFKKIPLKSKDELHKMGSTFNKMIDLLHQNFEKQQQ----VSDASHELRTSYAKLLKRQDVLEESVEAIYSEAVRMKGMTNQMLLLANSSADWSLETNESDLV--RLCQVTAEQLE-VNIDEQKIKQVLVVLNAMKYSKD-IIVGIQKEKVFFSIQDYGMGIPKEDIQKVFDR-----------VDKARSRETGGTGL----GLSI------AKQIIDAHEGDIQLESEEGKW.................................................................................... 441
59 -9.040IDP02394 gene: phoQ; sensor protein PhoQ [Yersinia pestis CO92] YPO1633 [Yersinia pestis CO92]  ali follow..  12  174.................................................................................................................................................................................VVDTIPQELQRTDLVWNWFSYVLLANLLLVIPLLWLAAYWSLRPIKALASQISQLEKGERE-QLDENPPRELQSLVRNLNILLMNERQRYTKYRT---TLADLTHSLKTPLAVLQTTLREVEPIMLEQISRISQQIGYYLHRASMRSEHNVLGREIHSVP----ALLDSLYSALNKVYQRKNDFMEVMG---------NVL--NACVTTLHSEDDGPG--IPENKRQLIFQRTLRPGQGLGLSIAAEIIEQYQGKISITESGARMM.............................................................................................................. 472
60 -9.010IDP04397 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA3230 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  141......................................................................................................................................................................................SRLSSTMNTLIVLTLISFPLLILIAAVGGYFITQRAFRPVQQMSDSASKIGDGDLSKRINLKGKDEMYHLAQTFDKMFERLETSFESEKQ----TSDASHELRTPTSVIISQCE-----ALSQRNNPKEMEESLEVILKQSRKMSALISQLLLLARADQGNDNTF----------QFECINMSELTEIVVEELSLMVQEASIDITTHIEED---LFIKADQTLMMR--------LMNLLTNAIAYSKANGTVVSDNGIGISE--QHITKIWDRFYRVDAARTSSNIGNTGLGLSMVK--WIVELHGGEITVESGLGEG..................................................... 444
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.