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Query: IDP01314 hemolysin VCA0594 [Vibrio cholerae O1 biovar El Tor str. N16961], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQPVTKNGESMNKTALLLTVVGAVLLTGCARQENEYTVKEYTSMANPASVYCVEQGGQLEMVTENEQRVTYCVTKDGEKIEQWEYFRQNHDQQLast
1 -54.700IDP01314 hemolysin VCA0594 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali  100  1MQPVTKNGESMNKTALLLTVVGAVLLTGCARQENEYTVKEYTSMANPASVYCVEQGGQLEMVTENEQRVTYCVTKDGEKIEQWEYFRQNHDQQ 93
2 -43.300IDP00874 gene: yaoF; putative hemolysin STM1275 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  29  1..........MKF--TWIALPGVLLLSACSSSQPNAPRPPRIGMPNPAAVYCEQQGGTLMPVQTPQGVRSDCKLPNGEIIDEWTLWRREHPDT 81
3 -28.300IDP00882 putative cytoplasmic protein STM1649 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  1...........................................MSSAGEANCAMIGGSLSAARQLDGVIGMCALPNGKRCSEQSLAAGSCGS. 50
4 -12.300IDP04197 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2510 [Clostridium perfringens ATCC 13124]  ali follow..  15  1..........MKKVPVLVIIIFALLFVGCTNSSNSSSDSSVEIINSNQQNSNSNNNNSSNNDTKKSDS......................... 60
5 -12.200IDP05580 putative lipoprotein [Bacillus anthracis str. Ames] BA_0936 [Bacillus anthracis str. Ames]  ali follow..  17  1.........MLKKLGILVLGSAVALLVACGDSTKEASNEKKEEPKQEAKK........................................... 42
6 -12.000IDP05267 hypothetical protein lmo0255 [Listeria monocytogenes EGD-e] lmo0255 [Listeria monocytogenes EGD-e]  ali follow..  18  1..........MKKFLILSILVLALLVTACGSDSSDKKSAKKEEKMETVTYIADINGAKLEATFSHVGD......................... 59
7 -11.500IDP05448 hypothetical protein lmo2594 [Listeria monocytogenes EGD-e] lmo2594 [Listeria monocytogenes EGD-e]  ali follow..  13  1..........MKKTSIIFIFCTLLFVTACSTSENQTQATEATGTDKYNPEAAIRFDIVDKYYDETGNKIKITDLNKNDDVKII.......... 91
8 -10.900IDP05442 putative lipoprotein [Bacillus anthracis str. Ames] BA_0171 [Bacillus anthracis str. Ames]  ali follow..  20  1..........MSKKLLSLFSAVIVVITGCGQSDTTNKEQKENAAKENKTE........................................... 43
9 -10.800IDP05715 iron compound ABC transporter, iron compound-binding protein [Bacillus anthracis str. Ames] BA_0351 [Bacillus anthracis str. Ames]  ali follow..  16  1..........MKKLFISLTVLFVLVMSACSNGSTDKKNDAKGSKSETITY--QSENGKVEVPANPK........................... 54
10 -10.800IDP04392 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1500 [Clostridium perfringens ATCC 13124]  ali follow..  15  1..........MRVLKVILAIIPAFLFMGCGEFSKNDVAKSFEKLSEKEEQILNLTDNRVFFNKGYRIDLNYEVYKEGKEVKN........... 82
11 -10.600IDP05607 putative lipoprotein [Bacillus anthracis str. Ames] BA_4862 [Bacillus anthracis str. Ames]  ali follow..  15  1MD------RHMKFSMFMFLGVVLIILAACTTKSVEQVAVKEVPKEG............................................... 40
12 -10.600IDP05009 putative lipoprotein [Bacillus anthracis str. Ames] BA_4237 [Bacillus anthracis str. Ames]  ali follow..  15  1..........MKAKSIFVLCSFLLMLSGCFHQEEKKVEPKKKESIPETKE........................................... 41
13 -10.400IDP05445 hypothetical protein lmo0821 [Listeria monocytogenes EGD-e] lmo0821 [Listeria monocytogenes EGD-e]  ali follow..  12  1..........MKKIIFTVVLSLVLVLAG-----------------------CADVTNTVKVDKKGEATISFDIDISSVAGIF........... 49
14 -10.400IDP05010 putative lipoprotein [Bacillus anthracis str. Ames] BA_4934 [Bacillus anthracis str. Ames]  ali follow..  21  1..........MKKVLFVLLLTASILLIGCSTKKEKAGMN-------------LEKAQKVEIESLTDSSE-KKVITDKKEIEK........... 60
15 -10.300IDP05588 putative lipoprotein [Bacillus anthracis str. Ames] BA_2883 [Bacillus anthracis str. Ames]  ali follow..  13  1MK------VYVKIALLCLTFTCIFALAACKGTDEKKETNPTSENSKNEQN........................................... 44
16 -10.200IDP05148 putative lipoprotein [Bacillus anthracis str. Ames] BA_0177 [Bacillus anthracis str. Ames]  ali follow..  15  1..........MKKIFVSSLVLAISLGVGCSNEKTAKTDEPKKESVQKEKELTAKD...................................... 46
17 -10.100IDP93894 lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005558 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  12  1..........MKLTQKISLLLAASVLAGCATAPKPIYHWD--NYQSTVYEYYKSDASPEQQIAALKEHLGMLYGNTGHTDLAMTEFNTE.... 95
18 -10.100IDP05050 iron compound ABC transporter, iron compound-binding protein [Bacillus anthracis str. Ames] BA_5330 [Bacillus anthracis str. Ames]  ali follow..  8  1..........MLLKLVSILAIFTLMLVACSDSGKETSKATKDNSSDKPKTVEITDAGKVKVPVNPK........................... 57
19 -9.960IDP05763 hypothetical protein lmo2331 [Listeria monocytogenes EGD-e] lmo2331 [Listeria monocytogenes EGD-e]  ali follow..  20  1..........MKKLLAGFMLAFSIFLTGCGGTDNTRKENHSDGSAEVKNK........................................... 43
20 -9.910IDP05677 hypothetical protein lmo1068 [Listeria monocytogenes EGD-e] lmo1068 [Listeria monocytogenes EGD-e]  ali follow..  13  1..........MKKWMVISIISLVALLGACGNNDNEKDQEDKSTTDSTTKKAKSSSNESNKAAETKEND......................... 59
21 -9.880IDP05125 putative lipoprotein [Bacillus anthracis str. Ames] BA_4310 [Bacillus anthracis str. Ames]  ali follow..  10  1..........MKK-LIMTLFIAMLALAGCNTNKEEPKKEQKVAVQTNPKEIKPGEKTEVQALVTQGKE......................... 62
22 -9.730IDP05460 putative lipoprotein [Bacillus anthracis str. Ames] BA_0985 [Bacillus anthracis str. Ames]  ali follow..  13  1..........MKKIIICALTALSFTLIGCASTSATDKSPQAKQEHKQNAFQLNSAN-DIEILQTTNNTTSKSQTDNKEMIQS........... 74
23 -9.460IDP93852 lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005559 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  27  1..........MKAIFAVCAVMMALLLTGCAKPVSQDYSAFKQSKPKSILV........................................... 40
24 -9.410IDP05714 putative ABC transporter, substrate-binding protein [Bacillus anthracis str. Ames] BA_0175 [Bacillus anthracis str. Ames]  ali follow..  11  1..........MKKVLLSIVSGAVLLLGACSAGSDKEVKALDEQIFEKVKEVAAKDGLEIDVKVFNDYVAPNVSLDEKS............... 81
25 -9.280IDP01315 hypothetical protein VC0942 VC0942 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  21  1MNP--DHKEIIMNHIGLFALTAAALLAGCSSNTQQDNYREAS-CNTEVNIYSVSDDGQVRIVCADGAKFAL...................... 71
26 -9.230IDP05670 hypothetical protein lmo0617 [Listeria monocytogenes EGD-e] lmo0617 [Listeria monocytogenes EGD-e]  ali follow..  20  1..........MKKLLLMGIITFALALTACGGTEDKASTEKIETAKAETK............................................ 43
27 -9.090IDP04408 iron(III) ABC transporter, iron(III)-binding protein [Clostridium perfringens ATCC 13124] CPF_1426 [Clostridium perfringens ATCC 13124]  ali follow..  17  1..........MRRGLATIGLVFSLALAGCTGSSKESTASKNTEEGYPVTITYDQSGKEFQETFESKPKRVISTNQTTTEI............. 75
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.