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Query: IDP01394 soluble lytic murein transglycosylase VC0700 [Vibrio cholerae O1 biovar El Tor str. N16961], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTRLTVFKPRSLVSILMFTTVWAVGSASASTLDLEAQRAQYDKAQRWLDEKNVAQYQRIRKQIDSYPLTPYLDYRAFLIDLGSKPPIAVRNFIDSHKEYPFSARIAAPYLDALARSKKWSALLQFQTQLPNGETYQCHYYNAKLQTGKRNEAFEGAKKLWLNGASIADACDPLFAEWDRVGGLSDDWVLKRALLAFEGRNRNLIVYLQKKLDGKKSQAKAQGMLELFDKPERVLAYSRKASQDPINQKLAELALQKWARSEPQEAQAVFNDVAKAQGWNQEQKGRVARFIAIRLMDTEEAAIAKWRDEVTRTSQDVRLIEARIRLALRENDWRGLSQWIAVLPEQERKTLRWQYWQGRSEIALGKKKEGTERLKALLGQRSFYSVAAAKILQQSVNYPTSTVTLDMKQIKAHKKALARIDELIALDKVPAAKSEWRWLLDRVSQKEKEMLAAYAADSGWYQMTIAATISASLWDNNQLRFPVVHQNLFTLHGRKNGVDPITLMSLARQESALNPDAQSPVGARGLMQIMPDTARYTARKYQLSYSNPDELYQVGKNIEIGSRYLSSLLERYDQNRILAFAAYNAGPSRVDSWLKRSQGKLDAYGFIEAIPFAETRGYVQNILMFETYYRDLMGVQGRFLNEHELNTKYLast
1 -166.000IDP01394 soluble lytic murein transglycosylase VC0700 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali  100  1MTRLTVFKPRSLVSILMFTTVWAVGSASASTLDLEAQRAQYDKAQRWLDEKNVAQYQRIRKQIDSYPLTPYLDYRAFLIDLGSKPPIAVRNFIDSHKEYPFSARIAAPYLDALARSKKWSALLQFQTQLPNGETYQCHYYNAKLQTGKRNEAFEGAKKLWLNGASIADACDPLFAEWDRVGGLSDDWVLKRALLAFEGRNRNLIVYLQKKLDGKKSQAKAQGMLELFDKPERVLAYSRKASQDPINQKLAELALQKWARSEPQEAQAVFNDVAKAQGWNQEQKGRVARFIAIRLMDTEEAAIAKWRDEVTRTSQDVRLIEARIRLALRENDWRGLSQWIAVLPEQERKTLRWQYWQGRSEIALGKKKEGTERLKALLGQRSFYSVAAAKILQQSVNYPTSTVTLDMKQIKAHKKALARIDELIALDKVPAAKSEWRWLLDRVSQKEKEMLAAYAADSGWYQMTIAATISASLWDNNQLRFPVVHQNLFTLHGRKNGVDPITLMSLARQESALNPDAQSPVGARGLMQIMPDTARYTARKYQLSYSNPDELYQVGKNIEIGSRYLSSLLERYDQNRILAFAAYNAGPSRVDSWLKRSQGKLDAYGFIEAIPFAETRGYVQNILMFETYYRDLMGVQGRFLNEHELNTKY 648
2 -157.000IDP00171 putative soluble lytic murein transglycosylase YPO0452 [Yersinia pestis CO92]  ali follow..  34  4............WRYLAIGVCLMTTSGVTFADSLDAQRQRYQQVKLAWDSNQMDTVAQLMPTLRDYPLYPYLEYRQLTQDLSQVSTAQVKDFLNRHPTLPPAKSLPSRFVNELARREDWRGLLTFSPTAPKPVAARCNYYYAKWATGEQSVAWEGASEIWLNGQSLPGSCDKLFSVWQQAGHQTPLATLARMKLALKEGNASLVSYLLKQLPA-DYQTMGTALAKLQSDPSSVESFARTVGPTDFTRSATTIAFTRLARQDVENARLMIPSLVRLQKMSDSEKLELEEAVAWRMGNDATYEQAKWRDQVALRSHSTSLLERRIRMSLGSGDRQGLATWLARLPAEAQDKDEWRYWRASLLLEQGKKAEGEAILRSLTKERGFYPMVAAQKLNIPYPIKVQV-AAKPDVSLAQRPEIARVRELMYWNMDNQARAEWSYLVASRSKAEQEALARYAFDQKWADLSVQATIVAKLWDHLEERFPMAWTKEFRQFTEDKGITPSYAMAIARQESAWNPKAQSPVGATGLMQVMPRTAEHTVKRNNIAYLNSSQLLDPVTNIEIGTYYLEEVYQQFGRNRILSSAAYNAGPSRVNTWLGNSGGQVDAVAFIESIPFSETRGYVKNVLAYDAFYRHFMNRPAKVLSDAEWQRRY 639
3 -133.000IDP95275 lytic murein transglycosylase soluble [Acinetobacter baumannii ATCC 17978] YP_001086026 [Acinetobacter baumannii ATCC 17978]  ali follow..  22  1..............................................................MQNDVLGYYPEYWKLNTNLGFQSPTSIVSFAQRYPQSAMAEKLAADYVEEKVKQADFASAQPILPYSNPDQAENCALAQVRAKSGDAL-VFAEYKDVWLATESQPESCIGLGRMMLSSPLMSTQDKQQRLWVQLRAGLSGQALATAQTLGLNLS---LAQLNQIQANPLNYLWSAP--KTNDVDYAYLIFALGRLANNDLGNAFANVQRVAQGTPESVQKYLYRTVAYIGGTTNNFNREVLQYFDASYGYPLSPEEAEIYARQAIRFSAWESLIRAIDSMSVSQKQEDRWQYWLARATEQRGDSNTAQRIYKKLASGDDYHNLLAKDRLGVRYNHQPYNPTASDLRRLDQNIHFNRAFTLRRINANTYTNREWNWAVRQADDGLLLAAAKRAHDMGWYDRAIYAADRTTNKHNDTYRYVTPHKTNVVSHSYNAGIDPAWAYGLMRQESRFVTSARSHVGAGGLMQIMPDTAKLIARQMGETYNPAA-LSEMNTNIRYGTFYLSMIQGQLSNNPVLATAGYNAGPNRARRWQPDYQP-IEADQYTETIPLLETRDYVKHVMTNATHYGVILGQGAQSLIQR...... 587
4 -66.600IDP00589 gene: mltC; membrane-bound lytic murein transglycosylase C YPO0954 [Yersinia pestis CO92]  ali follow..  16  2............................................................................................................................................................................................................................................................................................................KKILALLVIAPLLVSCSGNKNQVENEVFVKDTNGFEILMGQF-----AHNIENIWGLKEVLIAGPKDYVK--YTDQYQTRSHINFDAGTITIETIATTNPGDDPGSIDLYSDVNDIQISKEPFLYGQVLDNNGEPIRWEWRAAHFADYLLQNKMQTRTSGLHVISFV-TIQLVPNHLDKRAHKYLPLVRKSAARYGVEESLILAIMQTESSFNPYAVSRSDALGLMQVVQHTAGKDVFKLKGKSGSRSYLFDPENNIDAGTAYLSILQNTYLGGRYAVITSYNGGAGSVLRVINTMSPGDVFQTLTTKHPSGESRRYLVKVNSAQKNYRR.................. 357
5 -63.200IDP05102 putative transglycosylase [Clostridium difficile 630] CD1130 [Peptoclostridium difficile 630]  ali follow..  25  2......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ESKVIHKFLYPKKYSEYVEKYSKEFNLDENIVYSVIKAESKFNSSAVSKKEAKGLMQILDITRDWGAEELNLKNVD---IFDPETNIRLGCWYLSKLYKEF-GKLDLVIAAYNGGSGNVKKWLENNE--SKDGENLHDIPFKQTSKYVEKVKNNYEHYNKIYGKKGK........... 163
6 -57.600IDP00172 putative membrane-bound lytic murein transglycosylase YPO2438 [Yersinia pestis CO92]  ali follow..  19  3...............................................................................................................................................................................................................................................................................................................................................................................................................................................SKVGCLMAILLLAGCAKQTPPPQANNGWLKKTPQGN-SLNVAKSSAGSTTVAYSDVIKQAASHYGVDETLIKAIIQVESGYNPDVVSRSNAVGLMQIKASTAGRDAYRMKGRNGSSRELKDPVKNIDIGAAYINILQNQQLAGRYATIVSYANGAGAMLRTFSSLSPNEFYQHIQKKHPAAQAPRYLWKVDTAYRAMSE.................. 220
7 -48.200IDP05428 hypothetical protein lmo0717 [Listeria monocytogenes EGD-e] lmo0717 [Listeria monocytogenes EGD-e]  ali follow..  35  111..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KYSDLIKTAATKYGVPEALIKRVIQVESNFNPNVVSSAGATGLMQLMYGSNR----------------TDPATNIDAGTKQLASYIKKYDGDLKLALAAYNAGPGNVHKY-----------------PFKETQNYLTKIIG......................... 222
8 -48.200IDP01200 transglycosylase, SLT family BA_1707 [Bacillus anthracis str. Ames]  ali follow..  30  139...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YEDIIDRVSHTYGIPKTLIQKMIEVESDFNPKTVSHAGAKGLMQLMPANVK----EMGI-----KNPFSPAESIEGGVKELSGYLKKNNGDLVLALASYNAGPGNVRKY-----------------PFKETQGYIKKILNI---DVSK................. 261
9 -45.400IDP05097 putative transglycosylase [Clostridium difficile 630] CD0226 [Peptoclostridium difficile 630]  ali follow..  27  95...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IENAVEQASKKYNVDANLIKAIIKVESDFNPNTVSSAGAKGLMQLMPENCRDLG----------TNPFNIEQNIDAGTRHIKEYIDMFGGSIEMGLMAYNGGPGRMRSR-------VESISDLYKMP-KETQNYIPKVMKY---YR................... 221
10 -32.700IDP02784 putative transglycosylase [Salmonella typhimurium LT2] PSLT072 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  22  16................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VVHAADCFDLAGRDYKIDPDLLRAISWKESRNRANAVGINPVSGLMQVDSQHFNELAR---YGIKPEQLVSDPCLNIYTGAYYLAIAFRKW-GVSWTAVGAYNAGFKKTPLQ------------------DARRLDYATDVHRIWIAIKQSKTRQTPA.......... 155
11 -27.000IDP93901 type III secretion system effector protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007715 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  21  19..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AQASCLSSAAIRWDVPEIILEAIIINESGGKPDARNGSHDYGLMQINTINIDPLKSQGIIK--NKQALMQPCTNIEAGAYLLSQKFKKH-GYSWRAVGAYHSETAH------------------------YRDKYASKIMKIVNSGPDFAQRNASLLRST----TY 158
12 -26.400IDP00173 putative membrane protein YPO2922 [Yersinia pestis CO92]  ali follow..  24  295..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EKHAGDIDWKLLAVIAYQESHWNPQATSPTGVRGLMMLTRATADGLG----------KDRVDPEESIRGGAIYLQRLMKKLDERIWFALAAYNLGYGHMRRLTKNQN--GNPDSWKMRLPMHEAYNYVENIRRYQVSLVGYLQEKEKKAAQHA..... 465
13 -25.300IDP00590 gene: mltD; predicted membrane-bound lytic murein transglycosylase D YPO1078 [Yersinia pestis CO92]  ali follow..  26  122..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PYMYLIVEQIKKRKMPMELVL-LPIVESAFDPHATSSANAAGLWQIVPSTGRNYGLKQNQWYDGRR---DVVASTKAALDILERLNKMFNGDWLLTVAAYNSGEGRVMQAIKANKAKKPTDFWALSLP-RETSIYVPKMLALGDLLK................... 264
14 -25.000IDP06213 hypothetical protein HP0973 [Helicobacter pylori 26695] NP_207764 [Helicobacter pylori 26695]  ali follow..  14  79.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QFGSKENLGYEMA-GIAWKESCAGVYKINSDPSAGVYHSIPSVLKSYGHN---NVMGELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKGSRWERS------------------SNADAEKYYEEIQDRIRRLK................... 206
15 -23.600IDP02200 transglycosylase, Slt family [Coxiella burnetii RSA 493] CBU_1103 [Coxiella burnetii RSA 493]  ali follow..  26  110..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PYIYYVYQQTQQRHMPAEFAL-MPMLESGYNPFAYSNAGATGLWQMMPGTASSFGLEINWWYDGRR---DTVVSTQAALNYLCRLHGSF-QNWILATAAYDAGMGAVRAAQQYNQREQSVNFWNLPLP-QETRDYVPKLLALAIIIK................... 251
16 -23.400IDP01777 transglycosylase, Slt family [Coxiella burnetii RSA 493] CBU_0313 [Coxiella burnetii RSA 493]  ali follow..  26  88..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PYIYYVLQQTEKRGMPAEIAL-LPMIESNYNPFLYSKRGATGLWQIMPGTATGFGLLINWWYDGRR---DVVASTNAALNYLQYLHDYF-HNWLLAIAAYDAGEGTISAAIRYNRRHRPTDFWSLPLP-YETREYVPKLLALADIIK................... 229
17 -17.000IDP06547 set218a-001 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  20  11.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AMQCAASIHPSTAFDVARVESGFNPYAASRGDAEGLMQI--------STNFRHYGVSATELLDPCTNLSVFEHILRDCYRRG-GTLKRALSCYYSGFSTGQQPETAF----------------SGTSYIQRIGYPP....................... 160
18 -10.200IDP93831 cellulose synthase subunit BcsC [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001008212 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  1MRNI-----KINWLLSLALLPQAFVGVARGAEAVSPTQFLLEQVRLGEATNKDELVKQSLYRLNNPDVIAAGIRQALRQGNLAEAQKQLDKLQQLAPDSEVYRRAKLMLARLLATAGRVAEAKVKYDQNPPTLDLAVEYWRLVARLGQEVLATQKLASLDQQYPGNVALRMALARMYFSQQKAAQGYALLEKVATDPNGTSDAADLWMDTIVSPQSVTALTHFLDVFSTGPQADIARKELANQQTMLAARLSGLAKVDSGSGVAAIPALKQALAASPNDPE----ILGALGLAYARAGDAQALRLFEQAQKSDKDGLKSD-EGDKALKAGNTALAQQKYQQARQIDGSDSYALIGLGDVAVARHDDKTAEQHYQQALRLDP--SPQKALNYLNNLPRSQQAKMRDTLNSLQLDMLKQQAEMLAAQQQWHQAAEKYRQAQKMAPNDVTYRLAQALAQDGHLAQADAEFHQLASRKPGDPEQVYAYALYLSSTERDSQA--AHLATLPAAQWNDNIRELDQRLKLDQVLTLARQLRENGDESGAITALRQQPANTQIDLTLADWALER------GDYSEALAGYQREPQNPDARLGAEGRLSDARQHLQTEPLTGEGASLNTQRRVANAWSGV................. 689
19 -9.560IDP02611 M23/37 family peptidase [Bacillus anthracis str. `Ames Ancestor`] GBAA_pXO1_0111 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  19  4...........................................................................................................................................................................................................................................................................................................................................................................................................................SSHGLEKAMELAKFSKSQ--KERAREILE------EATYGHLAPSSNFVGGMCVGNVSPGGEPVNLNAKVTGYLPKIKEMAEKHGVAQGILAAQMMQESQGEGNMQAAEGHYGDLSSSCIGLKGSAR--------IGCIKDPNISIEAGVQEFKDVLAKANGDIALALQSYNYGPGFIS.......................................................... 174

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.