current user: public

If you have questions about the server, please let us know.

Query: IDP01472 fimbrial assembly protein PilP, putative VC2631 [Vibrio cholerae O1 biovar El Tor str. N16961], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170
# Score Template Links and tools%idFirst MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKADCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLGCWNQRNVKLALKLast
1 -75.000IDP01472 fimbrial assembly protein PilP, putative VC2631 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali  100  1MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKADCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLGCWNQRNVKLALK 172
2 -57.800IDP95284 lipoprotein (ComL) [Acinetobacter baumannii ATCC 17978] YP_001086187 [Acinetobacter baumannii ATCC 17978]  ali follow..  26  1.............................MANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIM--AGKRVYPNFSRAPQPLESYALEALNMKGSMRNNGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREGYVERPRTLVLI 142
3 -28.200IDP95139 hypothetical protein KP1_5093 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002921605 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  16  13.....................................................LSLLAAERDPFQP-----------------------VEDPCRTAQLSQWRYGGAVGDDAAWTGFLQDGNGKWRRVRMDEQLL-TGWRVSRLTAGELDIVT-----SSGCEPPAWRWQRE 102
4 -16.800IDP93946 general secretion pathway protein C [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007723 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  12  21FNTTTRNIVVALLLVILILLRIEHHPIPLLLSTTVDNSETHALETHKDSIKGNQIAELKKLSLFSAETADASDNPYRVGYLAADDPLLFHAPPSN-----AARVVGILSIHEKSITIIEQ-NKYQSSYSQGEKMPENNAVVIKIFDDRVIINH-----QG----YYESLLLD 180
5 -16.100IDP04716 general secretion pathway protein C [Yersinia pestis CO92] YPO0817 [Yersinia pestis CO92]  ali follow..  16.NQFIFIELSIVFLVAFHTVMVFWSIIYNDSNDMFILYDGQSYDSQNSTEKAKVIDSSNLSKMFDRKINKPDKKIEMNDVLFYSPEYI------------EIKLVGVIEHSAPSESIILEVKGKQTTHLTRENINYEDIVIVKIFTDRVIIKR-----NG----KYYSLIIN 167
6 -12.300IDP00141 gene: mshK; MSHA biogenesis protein MshK VC0401 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  19  16........................................................SYAGEDPTAPLGWVSPAKPELQKP-----------------SYPVPTLQSIVAEGRSCYAII---EQRV--VAQGDVVN--GYRVATIHPDQVKLTR---------AGKEWRLAL. 98
7 -10.500IDP95107 pullulanase-specific type II secretion system component C [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917874 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  12  14.GIIKLLPQIVTLIILITAIPQLAKLTWRVVFPVSPEDISALPLTMPPPADPELKNVRPAFTLFGLAVKISPTPTDAASLNQVPVSS-------------KLRLAGLLASSNPARSIIIEKGNQQVSLSTGDPLPGYDARIAAILPDRIIVNY................... 154
8 -10.200IDP05677 hypothetical protein lmo1068 [Listeria monocytogenes EGD-e] lmo1068 [Listeria monocytogenes EGD-e]  ali follow..  11  1MKKWMVISIISLVALLGACGNNDNEKDQEDKSTTDSTTKKAKSSSNESNKAAETKENDTNDKAATTDKGSSNPTKEEKDTSTTTDTPKKETPKSPA-SPSGFKVSTVESILGGDVTTTYLSSSKSFQKDFEALLFINQYKVEHVINPT........................ 156
9 -10.200IDP05267 hypothetical protein lmo0255 [Listeria monocytogenes EGD-e] lmo0255 [Listeria monocytogenes EGD-e]  ali follow..  10  1MKKLSILSILVLALLVTACGSDSSDKKSAKKEEKMETVTYIADINGAKLEATFSHVGDNLRKVDQKMVYPLTALGLESGANLDDATKKQLEEQVASQYSAYKESKGASLE-------TKFTDEALELTMSVDLYKADKDSVASLDPKNVSLKETVKEAQGFKKKES...... 167
10 -9.820IDP04197 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2510 [Clostridium perfringens ATCC 13124]  ali follow..  10  1MKKLLVLVIIIFALLFVGCTNSSNSSSDSSVEIINSNQQNSNSNNNNSSNNDTKKSDSNNASH-KDNKDNNVSNNKNTNKKLDNKAEKLLKDIKEKAVKGEIIDYDF................................................................. 108
11 -9.470IDP05580 putative lipoprotein [Bacillus anthracis str. Ames] BA_0936 [Bacillus anthracis str. Ames]  ali follow..  20  1MKLGILVLGSAVALSLVACGDSTKEASNEKKEEPKQEAKKENKENKESK........................................................................................................................... 51
12 -9.440IDP05442 putative lipoprotein [Bacillus anthracis str. Ames] BA_0171 [Bacillus anthracis str. Ames]  ali follow..  21  1MSKKLLSLFSAVIVVITGCGQSDTTNKEQKENAAKENKTEKTDTTKENKPEE........................................................................................................................ 55
13 -9.130IDP05050 iron compound ABC transporter, iron compound-binding protein [Bacillus anthracis str. Ames] BA_5330 [Bacillus anthracis str. Ames]  ali follow..  11  1MLLKLVSILAIFTLMLVACSDSGK-------ETSKATKDNSSDKPKTVEITDAHGKVKVPVNP-------------------------KNVVALDNRTFETLADWGIAPKDIMPADSAYKKDEKVQNI--GNHREPNLEIIAAANPELVIVGQRFADHYEEIKKLVPNAAVI 142
14 -9.120IDP93852 lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005559 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  13  1MKAIFAVCAVMMALLLTGCAKPVSQDYSAFKQSKPKSILVLLPQNQSPEVEASHGMLSQVTYPLSPVAVVEETFKQNGMTNAADISAVSPAKLHKIFGADAA-LYITIVQYGTSYQILTSDTRVTANAKL---VDLKTGKLL.............................. 145
15 -9.100IDP05714 putative ABC transporter, substrate-binding protein [Bacillus anthracis str. Ames] BA_0175 [Bacillus anthracis str. Ames]  ali follow..  13  1MKKVLLSIVSGAVLLLGACSAGSDKEVKALDEKKITVGVTGGPHEQIFEKVKEVAAKDGLEIDVKVFNDYVAPNVSLDEKS-LDVNSYQTKSYLDVFKAERMKLTEVFSTVTFPMGVYSKSLKDVKDLKDGDAIATNELRALKLFEKALKVDP................... 160

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.