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Query: IDP01602 gene: amn; AMP nucleosidase [Yersinia pestis CO92] YPO2288 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNKLQDTGSLAVVEAIDKLEMLYDAALAALRDAISAFIRDGSLPNAAERSKGLFSYPQLSVRWDGKFSDHHRTRAYGRFSRAGQYSTTITRPALFREYLTEQMTLLESEYGAVFEVTPSQQEMPYPFVIDGSDLILDRSMTAGLAQHFPTTDLAKIGDGITDGIETIALGTASLGSAVSDLPLSHFDALRTDFSLARLKHYTGTPAEDIQPYILFTNYSRYVDEFVRWAGEQILDPNSPYKALSCAGGSYITAENADPEKTLSDLAWKKHQMPAYHLIAKNGQGITLVNIGVGPSNAKTICDHLAVLRPHVWLMIGHCGGLRESQSIGDYVLAHAYLRDDHVLDAVLPPDIPIPSIAEIQRALYDATKAVSGMPGVEVKQRLRTGTVVTSDDRNWELRFSASSLRFSLSRAVAVDMESATIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANHFYEGAISEHLQIGIRAIDLIGGSSAKIRAMATRCRIPPDKSFGYRVRNSLKPSVFSKSSTTDWHFSFDSPLMSMPNAIFFSTFIHGNSAYSLast
1 -187.000IDP01602 gene: amn; AMP nucleosidase [Yersinia pestis CO92] YPO2288 [Yersinia pestis CO92]  ali  100  1MNKLQDTGSLAVVEAIDKLEMLYDAALAALRDAISAFIRDGSLPNAAERSKGLFSYPQLSVRWDGKFSDHHRTRAYGRFSRAGQYSTTITRPALFREYLTEQMTLLESEYGAVFEVTPSQQEMPYPFVIDGSDLILDRSMTAGLAQHFPTTDLAKIGDGITDGIETIALGTASLGSAVSDLPLSHFDALRTDFSLARLKHYTGTPAEDIQPYILFTNYSRYVDEFVRWAGEQILDPNSPYKALSCAGGSYITAENADPEKTLSDLAWKKHQMPAYHLIAKNGQGITLVNIGVGPSNAKTICDHLAVLRPHVWLMIGHCGGLRESQSIGDYVLAHAYLRDDHVLDAVLPPDIPIPSIAEIQRALYDATKAVSGMPGVEVKQRLRTGTVVTSDDRNWELRFSASSLRFSLSRAVAVDMESATIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANHFYEGAISEHLQIGIRAIDLIGGSSAKIRAMATRCRIPPDKSFGYRVRNSLKPSVFSKSSTTDWHFSFDSPLMSMPNAIFFSTFIHGNSAYS 546
2 -49.000IDP90930 gene: mtn; 5`-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Yersinia pestis CO92] YPO3384 [Yersinia pestis CO92]  ali follow..  16  1..................................................................................................................................................................................................................................................MKVGIIGAMEEEVTLLRDRIENRQTLARAGCEIYTGQLNGIDVALLKSGIGKVAAAMGTTLLLECQPDLVINTGSAGGLDSSLKVGDIVVSNEVRYHDADVTAFGYEPGQMAGCPAAFVA-DEDLIALAENCIQQLKLNAVRGLICSGDAFINGAEPLARIRA-AFPTVAAVEMEAAAIGHVCYLFNTPFVVVRAISDVADQAS---HLSFEEFLVVAAKQSTLMIKAMLTTLAQRG................................................................... 233
3 -47.300IDP04345 uridine phosphorylase [Vibrio cholerae O1 biovar eltor str. N16961] VC1034 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  11.....................................................................................................................................................................................................................................FHLGVTEADLATLAIIPGDPARVQKIAELMD--NPVFLASHREYTVYRAELDGQSVVVCSTGIGGPSTSIAVEELAQLGVRTFLRVGTTGAIQPHVNVGDMIVTTGSVRLDGASLHFAPMEFPAVPDFDVATAMKAAA--------QESGATVHMGVTASSDTFYPGQRFQGSMKEWQDMGVLNFEMESATLLTMCASSGLKAGCVAGVIINRTQKEIPD----HATLKETEARSIKVVVEAARKMLK..................................................................... 258
4 -46.200IDP02397 gene: udp; uridine phosphorylase [Francisella tularensis subsp. tularensis SCHU S4] FTT1326 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  15  18.....................................................................................................................................................................................................................................YHIALSEEMIATIAILPGDPKRSEYLAKMLDT-DATFLASNREYTSYLAKVANQNVIVISTGMGGPSVAICIEELAMIGVKKFIRVGTCGAIQENIEIGDLILSTASVRLDGTSYHYAPIEYPAVASFSLNTSLYRSA--------QTLNKKIHCGITGSSDTFFPGQHFINSLNEWRKLNVLNFEMESSALFTVCATFGLEASCLCTVLAKRTTSEYIDKSKYDEGMYNIMMIIKHSIENNFFS........................................................................ 267
5 -44.500IDP02254 gene: deoD; purine nucleoside phosphorylase [Francisella tularensis subsp. tularensis SCHU S4] FTT0766 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  12  11.........................................................................................................................................................................................................................................LRKEEFAKTVIMPGDPLRAKYIAD-NYLENVVRVNAVRNMFGYTGTYKGKKVSVMGSGMGMPSMGIYAYELFKYDVDNIIRVGSAGSYKAEFKVYDVVLIEESYCESNFIEIVTGSK-------TIDVRSSEELNKELIASAQRQDIELKKAKAHCTDVFYRKNSDDYK-KIVKKYNCDLVEMETAALFATAAELGKKASAVVTISDSFITGESTTAQQREQSFTNMMEVALGTIKE............................................................................ 239
6 -42.400IDP92603 uridine phosphorylase, putative [Toxoplasma gondii ME49] TGME49_110640 [Toxoplasma gondii ME49]  ali follow..  10  18.....................................................................................................................................................................................................................................YHLGVKKGDLASLIVTVGCEQRARVLAAFLTDVTEVSSSRQFYTFTGKYIKGGQRMSIVCIGMGAPMADFFIREALEGEPLAVVRIGSCGIVDYATRPGTLMLSDESMYCYRNDPRPYLLTAPVKADKRLTDLIEANL--------NAQGAAVKRGLNCSAETFFACQNNANLLKDMTDLGVVSLEMETHQIFHLMHQRQSYAASLMIGLVNRSNPNLTAHVTAED-QDKATLAAGEAAFDALVTLVSEGI.................................................................. 298
7 -41.400IDP04004 gene: mtnN; 5`-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Clostridium perfringens ATCC 13124] CPF_1305 [Clostridium perfringens ATCC 13124]  ali follow..  19  39....................................................................................................................................................................................................................................................IGIIGAMNEELEVLLKDMKNQKEVKRNDLTFYEGDLWGQHVVAVVSGVGKVNAASCTQILASFNVKSLINIGVAGGVSKDIYPGDIVIGDTYVQHDVDASVFGDKIGQIPRMDVYDFKADEKLLNLAKEAAKNVEVKTYVGRIVSGDQFIADSNKVKVLD--EEFNAKAVEMESAAIAQVAYLNKIPFVIIRSISDNANNGA---HMDYKEFIPVGVKNSTSILKSMFENM....................................................................... 266
8 -31.400IDP90370 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_263 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  12  9.........................................................................................................................................................................................................................................................ADPAEAARTLSLFPFSLNKE-NFYTYHTENVLLDVMVLKTWGYRGVVQALSPPP---SGYDLWINAGFAGAGNPNIPLLKTYTITSVKELTPTTSVEEELEVTPIP-------------------------RLPLAQLTSVRSPYRDGFHE---------HLQLVDMEGFFIAKQASLVACPCSMIKVSSDYTTRE---GQDFLKNNKVKLSQKLAEAIFPIYSSFID..................................................................... 195
9 -5.160IDP92629 gene: yncA; predicted acyltransferase with acyl-CoA N-acyltransferase domain [Escherichia coli str. K-12 substr. MG1655] b1448 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  11  8............KADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFEARTLAGYPVLVSEENGVFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLSRLIDEARDCGKHVMVAQNQASLHLHQSLGFVVTAQMPQVGTKFGRWL---DLTFMQLQLDER............................................................................................................................................................................................................................................................................................................................................................................................... 165
10 -5.010IDP00086 gene: yncA; putative acyltransferase NT01ST1973 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  8............KADCAAITEIYNHAVLHTAAIWNDRTVDTDNRLAWYEARQLLGYPVLVSEENGVFGDWRSFDGFRYTVEHSVYVHPAHQGKGLGRKLLSRLIDEARRCGKHVMVAQNAASIRLHHSLGFTVTAQMPQVGVKFGRWL---DLTFMQLQLDEH............................................................................................................................................................................................................................................................................................................................................................................................... 165
FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 8 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24