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Query: IDP01810 gene: ygiB; hypothetical protein STM3187 [Salmonella typhimurium LT2] STM3187 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKRTKSIHHASFRKSWSARHLTPVALAVTAVFMLAGCEKSDETVSLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPAQAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKYTDAAGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSAAGTSTRSMGGLast
1 -93.900IDP01810 gene: ygiB; hypothetical protein STM3187 [Salmonella typhimurium LT2] STM3187 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MKRTKSIHHASFRKSWSARHLTPVALAVTAVFMLAGCEKSDETVSLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPAQAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKYTDAAGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSAAGTSTRSMGG 223
2 -11.800IDP05478 putative lipoprotein [Bacillus anthracis str. Ames] BA_2933 [Bacillus anthracis str. Ames]  ali follow..  12  3MDKSKFIKIATS--------------IGVSSFLLTGCGDYEEETAQQESTDGAKQGNELETLNC---------DKAPTNENVEKDELCKEN----------------NPSFSSYNENSHLPILPFVAGYLLASRTSNMNYSAKPNVYYGGTNSNNSNSSNKVDLNKQQPNPSNKVTPDTNTPKSSTTQTPKVNSGSSGIGNAKAPAGS............... 203
3 -10.500IDP05148 putative lipoprotein [Bacillus anthracis str. Ames] BA_0177 [Bacillus anthracis str. Ames]  ali follow..  16  1MKK-----------------IIFVSSLVLAISLGVGCSNEKTAKTDEPKKESVQKEKELTAKDVFKKTNEAFKNEEHVTMTYGVGVKAEGT.................................................................................................................................... 74
4 -10.400IDP04197 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2510 [Clostridium perfringens ATCC 13124]  ali follow..  19  1MKKL----------------LVPVLVIIIFALLFVGCTNSSNSSSDSSVEIINSNQQNSNSNNNNSSNNDTKKSDSNNASHKDNKDN........................................................................................................................................ 71
5 -9.640IDP05677 hypothetical protein lmo1068 [Listeria monocytogenes EGD-e] lmo1068 [Listeria monocytogenes EGD-e]  ali follow..  14  1MKK-----------------WMVIISIISLVALLGACGNNDNEKDQEDKSTTDSTTKKAKSSSNESNKAAETKENDTNDKAATTDKGSSNPTKEEKDTSTTTDTPKKETPKSPAKTEAFS....................................................................................................... 103
6 -9.280IDP04565 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1805 [Clostridium perfringens ATCC 13124]  ali follow..  13  2IKK-----------------IVVAVGLAFSLSFLVGCGNKS----LVEQGKAAIKQGNY--EEATAIFKAASEEDSKDKEEAESLYDLTYNYVISN............................................................................................................................... 74
7 -9.120IDP05009 putative lipoprotein [Bacillus anthracis str. Ames] BA_4237 [Bacillus anthracis str. Ames]  ali follow..  12  1MKA-----------------WKSIFVLCSFLLMLSGCFHQEEKKVEPKKKESIPETKEYGGRELKKVGQKVKETGWGTFKLEQIHSV........................................................................................................................................ 70
8 -9.010IDP05313 putative lipoprotein [Bacillus anthracis str. Ames] BA_1061 [Bacillus anthracis str. Ames]  ali follow..  14  1MRK-------------------LLTVIGITFLILAGCSNGDFE-KEIDAGKTALTNKEY--KNALSSFERALDEKKDDSGAIVLVEQTKI..................................................................................................................................... 68
9 -8.970IDP05588 putative lipoprotein [Bacillus anthracis str. Ames] BA_2883 [Bacillus anthracis str. Ames]  ali follow..  16  1MKVYVKI--------------ALLCLTFTCIFALAACKGTDEKKETNPTSENSKNEQNTSSEGKKEPEVKSNTDSNSKDIVINQKSI........................................................................................................................................ 73
10 -8.860IDP05242 hypothetical protein lmo2079 [Listeria monocytogenes EGD-e] lmo2079 [Listeria monocytogenes EGD-e]  ali follow..  13  1MKK-----------------GILLSILLALVLVISACGESAEEKA---------------AKTPQGKFVQTMKNGMNVPDQYTYTTSFAVN.................................................................................................................................... 59
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.