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Query: IDP01918 hypothetical protein lmo0514 [Listeria monocytogenes EGD-e] lmo0514 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKSLast
1 -106.000IDP01918 hypothetical protein lmo0514 [Listeria monocytogenes EGD-e] lmo0514 [Listeria monocytogenes EGD-e]  ali  100  1MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS 605
2 -83.500IDP05426 hypothetical protein lmo0610 [Listeria monocytogenes EGD-e] lmo0610 [Listeria monocytogenes EGD-e]  ali follow..  39  1MKKMGVKIPFTISFSANVSAEENISIKAAQDVVIPDPALKSYLNGLLGQPSTSDITEAQMDTITDVTISNASLTDLTGLDYAHNLTILHLTNTGVTDYSLVANIPSLTNLNISGSNLTTNSIPDLNGLTNVTNLNLSSGKLDNSALTKFNKLPNLTFLNLDNNPSITDFMPLKSLPNLASLFIQFCGVNDFRGIDSFPKLTNLAAFGQN-----VGSAILINSTIKSSALNYNEANQTIFVPFTLMTERSMNFDGYLFPFTTNTASSSTYFTNGVQISGSRLSIDDTGVTVSGITKDFFDSITKMEYNAFYDNPAGSYNSPPNFNSYSVSSGTYDHYFDIDHSLTITNDSAISYGEQTTVTEEQFLKDVHAETDDGTPVTSDFNTIVDFSKPGVYTVTLNAENAAGLKATPTQVTVTILAKPVITADKSISYTKDTTKTEQQFLQDIAAKTSDGSKVTSDFDSVVDLAKVGTYKVTLNAVSADGLNADPVIILVNVVAGNEPPTPPGPG----------------------PDPTPDPTPNPNNPNINPNPDNGQSAKSEIASNPSNSEVNIALPNTGDASQATTVLIGIILAGVAILFFRKRKH 588
3 -79.200IDP01994 hypothetical protein lmo1290 [Listeria monocytogenes EGD-e] lmo1290 [Listeria monocytogenes EGD-e]  ali follow..  34  1MSVAVLAVPVSQTTLPVFAAEQPGLKASQDNVNIPDSTFKAYLNGLLGQASTANITEAQMDSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNQISGLSNLERLRIMGADVTSDKIPNLSGLTNLTLLDLSHSAHDDSILTKINTLPKVTSIDLSYNGAITDIMPLKTMPELKSLNIQFDGVHDYRGIEDFPKLNTLLAYSQT-----IGGKKLINSDIKSSKLTYNAENQTLYVPFSLMTERTVNYDGYVPDFVKSTASSDTYFTNEQQVNGNRLTITSDGLTVSDVSKTDFDNLEKMEYNARIDLSYQSYNTPEQFQSYTISMPIYDHYFTVDHSLNITADSEKTYIENQLVTEATFLSDIHAKTDDGSTVTSDFADKVDFNTPGTYTVTLQSENNAGLKATPVQVNVTIKAKTTITADEKITYKVDTSKTEAAFLADIKATTNDGTAITSDFATVVDLSKPGKYVVTLNAENDLQ-KALPVQVMVIVEKETPIPDPTPTPTPDPTPTP--------------DPSPTPNPVINPNVNKPEVPSYKIPSLTVNEKKAKAEPSKEALPKTGDSLPVAGATVGFLLIGLSWFVSRKK.. 598
4 -72.000IDP02661 hypothetical protein lmo1289 [Listeria monocytogenes EGD-e] lmo1289 [Listeria monocytogenes EGD-e]  ali follow..  29  13VCSVMVLVPLSQTSLPSFAAEEIALKESQDVVNIPDPQLKKELNLYLNQAENADITEAQMATFRNITLNSG-IKDLTGIEYLKNITTLSI-NNINASYEPIQTLSSLEKLVINGENVNADIIPDLSVLSNLTFLDLSRTNIDDTIFSKISNIPNLNKLDISNNKGITKISELNNLPSLQELRVSDCQITNFKGIEKFPNLTAFYGDGQLFGIDSFE-TDGFKNIKSSELTFDANAKTLFVPSIVTVNTILNYDGLSLPYNTNPDYTSIALGDQSYVVTNDKISINQQGITLSDFTQADFDELEAFEVYLGFDSGNISKPANLANGTYSLKQIGSYRAFSVDHSVNITAQDNISYIQNDTVTPEKFLTDIKADANG-GTITSDLTDKVDFTKPGNYTVTLNAQNTKGLKGEPIQVTVTIIEKTVITADPEVTYDLNEAITEEEFLAEIKATTNDDTMITSDFESAVDFTKAGEYIVTLNAENDTQ-KAAPLTVKIRVNPKLPDPVVPIPYPD-----------------PTPDPTPDPTVPVPTPEDSTSDDGGVQHSNSRNPRISISDSSLEKLPKTGDSLPESGVLLGFLTLALGIVIRKK... 593
5 -57.300IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  16  81..............NTPKNNLKSTSENSKTYAELPDVNLAKIIAKNITEDINAEVSEAELQTITNLVATNQNITSLTGIEHLTALENINVNNNELTTIDSLFNIPTLKSISANNNKITG-NFSLVKTLPELHTLEVLGNAITELDIENQPNLVTLKKLTLKNLSQLNGLGTLMNLPEIISVDISGNYLSDDIHLENLPAVKNLDISSNE-----LTRLPKINDFPLLTTINVRSNKIDRLESLVDVPKLATLNADKQAVTLSKTIAAGNFTIPNNVENLAGQMVTPKIISNNGTYSDQSIAWASGELSGLSKVSYTFDEVINSPAIAGKYTGTVNQPIEVKAVPVIVADKSVSYAPVNAKDEATFLQDIRASASENAQITSDYSSEVDSSKLGTYEATIIAKSKSGASSDPIKLSVKIVDTEIQINNPEIIIEKGSELTEGQIIDQVGITATDNYDQDLNIHSKVDTSKPGSYEVTIYTEDSSGNRSETVTITVKVPDSENNELAESNTITGEVGETYETLAKEIEGYTLKENPANSSGVFEETRQTIQRQTPSKSVKKQSKAYSKINQMPMNLPETGDSTNLLFIFMGVLLLAGLTLSKAKRKN 831
6 -50.600IDP05423 gene: inlH; internalin H [Listeria monocytogenes EGD-e] lmo0263 [Listeria monocytogenes EGD-e]  ali follow..  18  1MKKLMVTAILGLSLSQGVEVRAESITQPTAINVIPDPALANAIKIAAGKSNVTDTVQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-----ISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYQNNLVVPNVVKGPSGAPIANGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTVTQPLTEAYTAVFDVDGKQTSVTVGANELIKEPTAPTKEGYTFTGWYDAKTGGTKWDFATDK-------------------------------------MPAEDITLYAQFTINSYTATFDIDGKLTTQKVTYQSLLEEPVAPTKDGYTFTGWYDAKTGGTK----------------------------------DFATGKMPAGNITLYAQFTKNDNPNPDDPTTNTPTGNGDGTSNPSNSGGNTTLPTAGDENTMLPIFIGVFLLGTATLILRKTIK 546
7 -50.400IDP05076 hypothetical protein lmo0801 [Listeria monocytogenes EGD-e] lmo0801 [Listeria monocytogenes EGD-e]  ali follow..  22  1MKKLCTVINAHAKTESPSADNNLQVAPPAAIKDLPDPAMANEVLKSLNLKKLNKVTQTELNSLTGFQAINKGIKSIEGVEYLQNITELDVEKNQITDIAPVANLKKLTTLLINTNQIT--DISPVADLANLTTFYCGNNPISD--ISAVQNLTKLSIFNCYTA-NVEDISPVKNLVNLKTLSLGSNNIHDISDIEKLTALEYLSFSNNPVENAQIRNIDFTANLPKLKSVYLYNNQISNISEVSNWANIEYLELNNNQITDITPVANLTTLKTLKLNDQIITNREIPFQKNISIENGNIVTPNNISDNGTYNSPTLSWNLNETKDNLSYDFTTKITILNINARPIITADGKVSYPEGTTKTTTEFLTDIHATTDDGSPIEVDLN-ALDFGTAGSYTVTLTAVDTAGNEATPVDVTIIITSKPVITADEKVSYPEGTTKTAAEFLTDIHATTDDGSPIEVDL-NAVDFGTAGSYTVTLNAVDTAGNEATPIQVTIIITNSKKID----------PIIPVEPGGNDVKPEKPNEIIILPKDSEIPLSIIPKDNIEKTNSINVIKMIETNEIKNKMLPKTGDKLP-LTVFLGMLITLAGISYLRK... 646
8 -47.600IDP05549 hypothetical protein lmo0549 [Listeria monocytogenes EGD-e] lmo0549 [Listeria monocytogenes EGD-e]  ali follow..  15  1MKFNWKVPVYSKAVETGKEVPKSPELLDDKSSTLPDEGMAKTIANQLGRTENNNFTEVELNRMWYLTS-VATIGSIEGIQYLPNLYDVRLQDKQCKDLSPFNGYSQLYRLNINNGNIS--DISPLTELSTLNDIDLGGNNISD--LSLFPKLPNLEEISLERN-NISDVSPLAKFTKIKIFNLDENHITDLSSLTKMPNLQRLYVRYQTLDMVKITATKPKATIDPITSKITYSAEEMAKKPFYYTPLFPGVTYSWDENFPLNGSNSLVDFRGTITQPLTYIEPP----------------------------------------------------------QVVSYNSGLTYEIGTSLTEQQFLNDVNLITDQPTTITSDFDKLKNLNTVGIYWVAVKASNIEGNAEANIMVTIKY-KPPVITADAEYTYLVGDKVNATQFRADVNATLTGEGTLRDDFIYKVRLNTAGDYVVTLTSPKSGYYEQDAIPVTVIVHVKELLELQIPDEFRMDIDANADSVPISDKKQTLKCYGSSGKAELEVIDRRTVRQGWTITGAMTPFTNSGGDVLQTSLKYQSKAPS....................... 608
9 -46.800IDP02569 gene: inlE; internalin E [Listeria monocytogenes EGD-e] lmo0264 [Listeria monocytogenes EGD-e]  ali follow..  16  20........ITFWVGMSSKEVQAAVIEHPTPINEITDPVLTDNVKTLLGKADVTDETQTDLDSVTHLSAKSAGITTIEGLQYLTNLSELELIDNQVTDLNPLTNLTKITELRLSGNPLK--DVSALAGLKNLKTMDLIYTDITD--VTPLAGLSNLQVLNLDIN-QITDITPLAGLSNLQFLSFGSTQVSDLTPLANLSKLTTLNAMNSK-----VSDVSPLTGLSNLTEVYLEENQISDVSPLAKLPNLSIVTLTNQTITNQPVFYQNKPIVPNVVTGLSGELIAPDTIS-------DNGTYTSPNLTWDLNSFINSVSYTFNQSVTFKNTTAPFSGTVTQPLTEVYAVVFDVEQTSAMVGVNELINEPTAPAKEGYIFDGWYDAKTDGNKWDFGIDKMPASDITLYAKFTENEEPNASSPINVEPNDN----------------------------------------------------------------------------------------------------------NSDNAEPNASSSNNVQENGTNEGINNLNSSGEDKVNIKLPITGDKLNVLPIFVGAVLIGIGLVLFRKKRQ 497
10 -46.800IDP05699 hypothetical protein lmo2396 [Listeria monocytogenes EGD-e] lmo2396 [Listeria monocytogenes EGD-e]  ali follow..  16  1MYK-------LVKIILALFLITTVFLPFSNVKAIPDPVLNSGLKNIIGNPFLDEITEANMATITVADLSNGLIKDLTGLDKAVNMTKLYFSNSQIKNLDKIKNLPNLKKIVAVTTGLN--NISALGEMPALEEVELGGDYITD--FTPLLEKENLTSFSYNSYINNDEFKNFTKLKSLVKLDLTWNNITDLSPLTENDHITNLNLNYNQ-----FTNVAPIATMKNLKVLYLNNNNLTSIDALNTLRGLTIAYADNNNITDLSNLKNFFEAMVAQGDYEGLQINNQTITLPTQTSAKSLSGWTVKTTPNNATGVFTNSKQTVTYVYEKADGAPVTVKYVDGDGNELATSDTLNGKIDAPYQTTAKSLSVKYVDADGNELATSDTLQTTAKSLSGWTVKTTPNNATGVFTNSKQTVTYVYEKADVDADGNELATSDTLNGKIDAPYQTTAESLSGWTVKTTPNNATGVFTNSKQTVTYVYEDGDGNKADGAPVTVKYVDADGNELATPDTLNGKLDTSYAVTAKNLSGWKLTATPSNANGVFTTDAQTVTKTPIKINENKPTASKVTTIKRQTKLPKTGDTQQDSILFVGTCFVLLGIYSISKKNS 940
11 -43.100IDP05666 gene: inlA; internalin A [Listeria monocytogenes EGD-e] lmo0433 [Listeria monocytogenes EGD-e]  ali follow..  14  149...LFNNQITDIDPLKNLTNLNRLELSSNTISDIALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK--DIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE--EVSYTFSQPVTIGKGTTTFSLLTEPAKPVKEGHTFVGWFDAQTGGTKWNFSTDKMPTNDINLYAQFSINSYTATFDNDGVTTSQTVDYQGLLQEPTAPTKEGYTFKGWYDAKTGGDKWDFATSKMPAKNITLYAQYSANSYTATFDVDGKSTTQAVDYQGLLKEPKAPTKAG-YTFKGWYDEKTDGKK-----DFATDKMPANDITLYAQFTKNPVAPPTTGGNTPPTTNNGGNTTPPSANIPGSDTSNTSTGNSASTTSTMNAYDPYNSKEASLPTTGDSDNALYLLLGLLAVGTAMALTKKARA 798
12 -42.900IDP00034 internalin, putative BA_1346 [Bacillus anthracis str. Ames]  ali follow..  16  3...LNTNEILDYSALKYMPNLKSLTVANAKIKDPFFANLKQLNHLALRGNEFSDVTPVKMDHLDSLDLSNNKITNVAPLIEMKNVKSLYLSGNQIEDVTALAKMEQLDYLNLANNKIT--NVAPLSALKNVTYLTLAGNQIEDIDLSGIEQMKQLEELWIGKN-EIKDVTPLSKMTQLKQLHLPNNELKDITPLSSLVNLQKLDLEANY-----ISDLTPASNLKKLVFLSFVANEIRDVRPVIELSKTAYINVQNQKVFLEETEVNK................................................................................................................................................................................................................................................................................................................................................. 280
13 -42.900IDP91680 INLB_LISMO [Listeria monocytogenes]  ali follow..  22  1MKEK-RRKYCLISGLAIIFSLWIIIGNPTPIKQISDDAFAETIKDNLKKKSVTDAVQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-----ISDLRALAGLKNLDVLELFSQECLNINHQSNLVVPNTVKNTDGSLVTPEIISDD................................................................................................................................................................................................................................................................................................................................................. 275
14 -42.800IDP05553 hypothetical protein lmo1136 [Listeria monocytogenes EGD-e] lmo1136 [Listeria monocytogenes EGD-e]  ali follow..  16  13...LSFACVFSIGDFTKPHTVEAEIVNPKPVNEITDPKLAQVVADWLKLPAATSSTQTQLNTIKALHFDSKGVQSLEGVEYLKNLTQVFGYGNQVSDLGPLSNLTKLEVIQMPRNQIS--DLTPIANLTALMSLDFEFNNLQT--IEPIKNLTNMLELNVSAN-PISDINAVKNMTQLEFLTLRDCEVSDLSPVENLSNMLMFWAGRNNISDNQIKDVSVIKNLTSLEDFDIKANQVSDISSLATSTTLETLTLSFNQIIDISPLKNL................................................................................................................................................................................................................................................................................................................................................. 295
15 -40.200IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames]  ali follow..  15  540........PITKEDLLTVKALKITDGKKEGITDFGLEFMTNVEELTLQNVNMKNAEFSSLRNLKSVDLSYNQIEDIKPLHSLEDLEKLNVSDNGIKNVPELFKMQKLKTLDLSNNKLDNAALDGIHQLENLDALLVNNNEINN--LDEISKVSKLNKLEMMSN-KVRDISPLASLKNLQWLNLSDNKIQDISTLSSMLDLLSLKLAGNE-----IRDVRPVIQLAQWITVDIKNQKIVLEDGMNQEIQIPIYDLEGEIFEDIELKSTDGIVTDRGTVVWKTPGAKIYSFSLNGNYHG----------------------------LSLLFSGTVTQNIVAKEEPKEPVEEVEGSKEEPIKEAEGSKEEPKEPAKEVEGSKEEPKEPAKEVEGSKEEVKEPAKEVEGPKEEVKEPTKEVE-----GPKEEVKEPTKEVEGPKEEVKEPMKEVEGSKEEVKGPTKEAEGSKEEVKEPTTEVEGSKEVKEPGKEVEGSKDAINQSAV--------------------------------AQETNVNNQVGKEKVVENQNMKENKPAVTKQEESKKSLGATGGQENTSTLLSGLALVLSALFVFRKRL. 1067
16 -38.600IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  19  534........ISDISMIHDMPNLRKVDASNNLITNIG-DNLPKLQSLDVHSNRITSTSVHDLPSLETFNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLIVSDNNSYLRSLGTMDGVPKLRILDLQNNYLNYTGLSSLSDLTNLTELNLRNNVYIDDISGLSTLSRLIYLNLDSNKIEDISALSNLTNLQELTLENNK-----IENISALSDLENLNKLVVSKNKIIDISPVANMVNRGAIVTASNQTYTLPTVLSYQSSFTIDNPVIWYDGTLLAPSSIGNSGNYKDGKITDFATVVDLNTFGEYEVTLTSEKDGIQGDSCKVIVKVLHGAPVISADQTISYDKHATITEKQFLEDIHASTDLDTAITTNFSTAVNLNKGGDYTVALNSENEDGVKAETVYVTVTVNKDPIISAKTEITYDKFSKKTEAAFLDDIDADTNDGSIVTSNFATAVNLDKAGDYTVTLNSINSDGVAGTPTAIIVHVEKEKIATISTNTAQQYEKYAKINETQFLKDVHASINASPTTAVLESDFETVVKLDVPGTYTVTITATNEDGGVSAPK................................ 1174
17 -37.500IDP02719 gene: inlG; internalin G [Listeria monocytogenes EGD-e] lmo0262 [Listeria monocytogenes EGD-e]  ali follow..  13  1MKQ---RKTSVLHVLLVVTAILGISLWVNAS--------------------------HGMKAQAESIAQPAPINEIFTDPALADEVKTELGKTSVTDEVTQTDLNQITKLEADDKGIN--SIEGIQYLTNLNMLGVSSNQITN--ITPLANLTNLDSLYLGDN-KISDVTPLSGLTQLTFVQLSINQIKDVTPLANLTKLNYLDLRENQ-----ISDASPLVNMTDLTVLHLEKQQITAAPVVYQTNLVAPDILKNAYGEVVPPTTIS-----------------------NNGTFASPNITWNLDSFTSEVSYDFNQKITLGDNGKVTFAGTVVQPIVEAPVNYITTFDVDGTTTTENVVVDTLITEPAEPTKEGYTFS-------------------------GWYDAETGGNEWDFAVDKMPATNMTLYAQFTINSYTATFDVDGETTNQKVDYQALLQEPTAPTKDG-YTFVGWYDAKTGGTEWDFATSKMPTSDITLYAR------------------------------TKNPSSDNSQTAPGKDDKNDKDKLTIKANDSADATSTKLPKTSDDSSMIPTILGTLFIGGAILILRKKTT 488
18 -37.100IDP01745 hypothetical protein lmo2821 [Listeria monocytogenes EGD-e] lmo2821 [Listeria monocytogenes EGD-e]  ali follow..  15  30.VIDNTTEITTDKETSSTKNTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQNPLLTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVDPYTSSAKDIPDYTLTTTPDNATGTFTTTSQSVTYVYTKNIVAAEPVTVNYVDDTGKTLSPSEILNGNVGDTYNATAKDGYTLSAEPTNATGQFTSSAQTVNYIYTKNPAPEKGVVE-STTEISGTIGDNYTTEPKTIEGYTLTTTPGNATGTFTTGSQTVTYVYTKNIEAAE---PITVNYVDANGKTLAPSETLNGNVGDTYKATAKQIDGYTLSAEPTNATGQFTSSAQTVNKPTNTTPTKPSNLKTTEVKKASDTLPKTGDSAPWKSALLGVFLSSTALVIWKKKK. 851
19 -35.100IDP05548 hypothetical protein lmo0409 [Listeria monocytogenes EGD-e] lmo0409 [Listeria monocytogenes EGD-e]  ali follow..  15  2..KSKNNYFKQITTIMTVVSLLIMVLGIQGNNDVPDADLAEGIRAELQKSSVTDVVKEELESISQLSVYAKKIASIEGLEYLTNLKFLNLNGNQITDLSPLSNLTKLTEIYIGDNKIS--DISPLQNLTNVTDLYLVDNDISD--LRPLANLTQMYSLRLGGNSNISDLNPVRNMTRLNNLEVTGSILKDLTPLADVTSLTRLTLSDNQIEDNKITDITPVTNLTRLQYLDLGSNEITDLSPVANLQKLTSLHLANNQITNISMLEDL---------------TNLTSLGLQNNKISDISVLKNLTHVTYLQLGYNQIVDVKIIGGLTNLTSLQLTQNHITDISPLANLTKIQ............................................................................................................................................................................................................................................................ 367
20 -34.300IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  11  2.................KKKFVYLLLLVLFMTVLPF-------------------QMLEAQAASTSWIE----QELDGNEPFIAETEKILSKNRQD--ITLADLETIQKIHV--FGADSIP-NKISDYKNLTALEANYGTITEVP-ESVGSLKELVTLNVDEN-NLQEFMVIFQLPKLEVLYISRGNITEIPTITTLSHLKVLDVSNQKLVTIP----DSILTTNWKAMHDGKLGMSLAGNQIASDIPANYLDNFNSGGNMLEFYDNPTIDYLQKQDQLTYTGGTIEVPLNTDFKQLTPDKTNLGLKSNIPLFSQHEFMYYDDGTSANILTNGVATDVGDGYITIKSTLSTNSNPFAKVRVPIKVTAPLKGADVTVQYLDSNGDTASTPKTIDGYTLTQTPTNAQGTFTEEPQTVIYVYTKNSVAAAPVTVKYLNEEGKILTASDNLTGNVDDPYQTKAK-ESKLPTNASGVFTVTYVYKTIPA-SIKAHDSTMNVGDTWSAKDNFDS-AVDSLGVAVPFDEVKVDGSVDTTKAGVYPVTYSFAGDSVTTKQSGTLKIKATHQEQPIVAGNLKLPTTGDNLWDSVLYFGFITVCLSFVLFFRLKK 622
21 -32.900IDP05755 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0732 [Listeria monocytogenes EGD-e]  ali follow..  13  1........MKKAFLCLSAIVLSLNFVWINPITSASKITKETNQQVNLKNNVTDIVTSEDLGGQTWLNEVNRQLAPKTVFEDLAKITTISLNNRSLTGEVPIKNLVSLQRLYLFSNKLSGEIPAELGELTKLTELRLDYNELSGK-----DGLGNISEIALQNNRLVGQISLYENRTGKNEVNVSGNQVTILKNSPTFINLQVVYMFNSELFDGHDVTITDTNDGRVLYDGTLTSDISIPLTNFKSGVHVINVMLDNAPNNPQNQTTFLIDILPVPAHDLTVNYVDEAGAEIHEPQTVSGNVGDDYDVTTPEFELAIDKYELDTEQMPTNGLGTLSSEAQTVTYVYKKVNGAPVTVKYEDQNGVEITTSDVLTGKLDATYQSKAKEIAGFTLDN----SKLPANASGIFETNPQTVTYVYQAATIKAHDSTIYVEDKWSAEDNFDSAVNSVGAAVSFDDLEVEGTVDTTKAGVYPVTYSFAGE----SVTINVTVKAKDLPAPPVTPTKPV----------------VPIQPTNPDQPDIQAAPGEHQASTDKSEALKVTVAQKEQPTVAGNLKLPTTGDNDSVLYSVFGLIAVCVAFSLFKQKHS 638
22 -31.400IDP02440 hypothetical protein lmo0331 [Listeria monocytogenes EGD-e] lmo0331 [Listeria monocytogenes EGD-e]  ali follow..  13  56..............NNNLKNQLVQAGTKTYNDYFPDDNLAKEVAETMNKNADESVTVEELAKVTKLDARSQGIEDSTGIEYLTGLEVLNLEDNQLKSID-VSKNLNLKELTCSNNPLANLD---VSKNLALEELTCENNELTQLDVSQNTALEQLTKLDVSKNSALRYLADVSKNPALTNLGCTKNQLTDLD-VSQNPNLGTLVCSDNQLTNLDVSQNQALENLA------CDNNELKNID-INQALSLKELSCENNQLTNLD...................................................................................................................................................................................................................................................................................................................................................... 308
23 -30.800IDP95186 gene: lmo2445; lmo2445 [Listeria monocytogenes EGD-e] CAD00523 [Listeria monocytogenes EGD-e]  ali follow..  13  2...........LFAPTIKAQADTVPLPAPIIEAFPVEAIAEAIAGELDKDSVNDTITQTAIPLPSLGLTGEDLSVL-NNEVFTNAIELAIWSNNIGELPDSEALPALENIEANGANITVF---PDANYPNLTNVDLSQNNFGFN-IPKFVGMEGLVSINMENA-GLSGYDIWMNMPNLDSLILNENHLISIPEIFLSQQLGTHSFANQTATYPP----TTIKQGENLKVFVPFIYQALD.............................................................................................................................................................................................................................................................................................................................................................................. 230
24 -30.400IDP95476 internalin [Listeria monocytogenes EGD-e] NP_465993 [Listeria monocytogenes EGD-e]  ali follow..  18  1MRKVLMFLSTALLLDLKAKAASDLYPLPAPIIDFPDDGLAKDMAKNLNKDSVNDIDQDDLDALTGLGFETSTITNITTIPHLKTLFFADPPGRLTRNLSLYQNYPEMDTITMSGNNLIG-SIPDFTGMPALKQLYMSEMLITSDELPNFNNIPLLITLDLSSN-QLTTIPDFQNIPNLTFLDLNANLLTNTPDFQNLPKLTDLNLRHNNLTGT----MVNYTNLPSLESLNLDYNFLTELP............................................................................................................................................................................................................................................................................................................................................................................ 280
25 -29.200IDP05081 putative cell surface protein, internalin proteins [Listeria monocytogenes EGD-e] lmo2027 [Listeria monocytogenes EGD-e]  ali follow..  17  1MKKILTGLSTITGGDLKAKAASDLYPLPAPIIDFPDEGLAKDMAKNLNKDSVNDIDQDDLDALTGLGFETETITNMQLLENNVNIVSVMEFGEDLTEFPDISTIPHLNTLFFNTPPEGNLSLPDYQNYPEMVTITMSGSNLIGA-IPDFTGMPDLSQLYMADM-MITSDPDFHTIPKLSTLDLSHNQLTNLPDFQNLTNLAELNLSFNNLTNTM----TNFTNLSNLNNLNLDYNHLNELP............................................................................................................................................................................................................................................................................................................................................................................ 258
26 -27.600CPX_91662_05666 Complex of CADH1_HUMAN with INLA_LISMO [Undefined organism]  ali follow..  15 1012.....NNQIADITPLANLTNLTGLTLFNNQITDIPLKNLTNLNRLELSSNTISDISAANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK--DIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL-------NNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNATVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKAIFNVKFETTKEVEAGNLLTEPAKPVKEGHTFVGWFDAQTGGTKINSYTATF---DNDGVTTSQTVDYQGLLQEPTAPTKEGYTYAQYSANSYTATFDVDGKSTTQAVDYQGLLKEPKAPTKAGYTFKGWYDEKTDGKKWDFAT-----DKMPANDITLYAQFTKNPVAPPTTGGNTPPTTNNGGNTTPPSANIPGSDTSNTSTGNSASTTSTMNAYDPYNSKEASLPTTGDSDNALYLLLGLLAVGTAMALTKKARA 1681
27 -26.600IDP91625 gene: ECs2073; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB35496 [Escherichia coli O157:H7 str. Sakai]  ali follow..  11  79...............PGLQNFTSINLDNNQLTHFDATNYDRLVKLSLNSNTLESINIHRNVSITHISMNNNCLRNID-IDRLSSITYFSAAHNKLEFV-QLESCEWLQYLNLSHNQLTDI---VTGNKEELLLLDLSHNKLASLHNALFPNLNTLL-----NNNLLSEIKMYSNFCKVQTLNAANNQLEKIHFLTYLSSIKSLRLDNNKITRIDTENTSDIRSLFPIIK---KSESLNFLN-ISGENNCPTIQLMLFNLFSP....................................................................................................................................................................................................................................................................................................................................................... 317
28 -21.700IDP91701 gene: SLIT3; slit homolog 3 protein precursor [Homo sapiens] NP_003053 [Homo sapiens]  ali follow..  15  43.....................ASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKAGLKNLRVLHLEDNQVSVIEAFQDLKQLERLRLNKNKLQVLPEFQSTPKLTRLDLSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNN-NISRILSFNHMPKIRTLRLHSNHLYRGKGLMEIPANLPEGIVEIRLEQNSIKAIGAFTQYKKLKRIDISKNQISDIDAFQGLKSLTSLVLYGNKITEIAK..................................................................................................................................................................................................................................................................................................................................................... 372
29 -21.500IDP92552 gene: NOD2; nucleotide-binding oligomerization domain-containing protein 2 [Homo sapiens] NP_071445 [Homo sapiens]  ali follow..  18  785.............VLQHLRRPVALQLDYNSVGDIGVEQLLPCLALYLRDNNISDRGICKLEQLQKLALFNNKLTDAKLLACRQNFLALRLGNNYITAAEGLRGNTSLQFLGFWGNRVGDEGAQALAEAQSLRWLSLVGNNIGSVGAQALALMVMLEELCLEENH-LQDAEGLKKNSSLKILKLSNNCITYLQALERNDTILEVWLRGNTFSLEEVDKLG.................................................................................................................................................................................................................................................................................................................................................................................................. 1032
30 -19.900IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  10  1MLKKIFIALIALVVIINTVSFTSVSASTPTWLEQTMNNNEPFIKEIETEKTRANITQTDLEAITALRV--TGASDIANIDMLTHLTLLKAVQGTISSVNSVGNLKELKILNLNTNHLSNFP-TIVYQLPKLEELQLNDGTIEEIPATITNMASHLKFLTVNNNRLVKVPTIIFSTNWSN---------------SSTGELDLFTTGNQIVTDIPANYVSNFNNGQN----------------LEFYDGQFQKQDQLTTTPGYTIDVPVGTDFNQLTPDKTKLALTSGRTLLAQHEFEYYDDGSSSLIHNGVAAAPGQATIFIKSKFSTQSNKFARTQVTVNIAALNGGPITVKHEDTKG-------QELAPPVILNGKDGDPYT--TTQKTFPGYTLVATPANQNGAFTLNPATVNYVYSANDYKLTSTFKDAQGQELKAPVVDTTTTAATIPGYSLVSTPANQNGTFGAGNVTVNYVYKKDDY------TLTSTYKDTNGQELKAPDATTYHYQDTYTTTAAVFPGYTLVATPTNATGTFGSSNITVHGYQLTSTFKDQQGKTISPDDVDTKTYHVNDP......................... 553
31 -19.700IDP91619 gene: ECs2672; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36095 [Escherichia coli O157:H7 str. Sakai]  ali follow..  10  1MFPLNDLSLKTQVQLNKITSNTESTIKQHELVSDDANELSSELVSCLGNDKFTPVSEDLLNMLSEFKLLREQCFRWNYTLLFENYGAYDKTGSITIEKSQEGTLPIRHKLEFISTNIAELKLTKITDALHSNELNLSSLSLGSVELDSIQVPESCKELELDFN-NLTEFPQV--PDGITLISVNNNLISYIDSF--PPKAKKIFICHNKLSEIP-------ALPDTAKVFDCSENNIKEIRWF--PKNLKEAYIEYNKIEVIPAI.................................................................................................................................................................................................................................................................................................................................................... 312
32 -19.300IDP91618 gene: ECs2674; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36097 [Escherichia coli O157:H7 str. Sakai]  ali follow..  10  1MFPLNDLSLKTQVQLNKITSNTESTIKQHELVSDDAIELSSELVSCLGNDKFTPVSENLLNMLSEFKLLREQCFRWGNTLLFENYESYDKTGSITIEKNQEGTLPIRHKLEFISTNIAELKLTKITDALHSNELDLSYLFLGSVELDSIQVPESCKELELDFN-NLTEFPQVPD--GITLISVNNNLISHIDSF--PPKAKKIFISHNKLSETP-------AIPDTAKVFDCGYNKIQEIRYF--PKNLKEARIGYNNIEVVPAI.................................................................................................................................................................................................................................................................................................................................................... 312
33 -16.000IDP05657 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0175 [Listeria monocytogenes EGD-e]  ali follow..  22  183..........................................................................................................................................................................................................................................................................................................................................................AEETEITYSPGSDVTEEQFLTDIHASVTDNYDSTSNFTSAVNLAVSGDYSVNVQATDKAGNVSNTLNVTVHVSTPPVAGANITVNHLDSNG-------NKIAESDTLTGVVNSNYQ--SESKKITGYTLETTPTNATGTFTDTPQTVDYIYKKDTVTPTPITV-----------------------NPVEPVKPVNPVVNKPVTVKPANDNTNPSTSNSVEKTTYSSLPTTGDTDQSSTIFGALLLLISAPLLLFKKK. 415
34 -15.200IDP05226 putative membrane associated lipoprotein [Listeria monocytogenes EGD-e] lmo0460 [Listeria monocytogenes EGD-e]  ali follow..  13  160..................TVLESVRIERSNLSRVTSSGIEKVIIRDNNYPTAPSLLTKNCSNLMEVDLSGLDTSAVTTMWDMRALEELDVSHFDTSSVTNMSYMRNLEVLDVSNSSVTNMY-AMFEDCTSLEELDVSHSSVTDMY-RVFNGCEKLKKLDVSDTSSATAMVQMRNCSALEKLDVSNFNTSLVTDMRAMTSLEALDVSNFDTSS--VTNMAAMEKVEKLDLSTFDTSSVTNMGTMKNCTALKSLY................................................................................................................................................................................................................................................................................................................................................................ 428
35 -14.000IDP91566 gene: ECs1568; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34991 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  33..............IEEARASGRLYIKDCDIEYLPQNEITSVTIENCNNLTTLTGLPVNTQNLSVINCEKLQITDMP-----STVKNLHIELTDSPFIHFISE--GIECLTVCHCYISGVATDSIKNVPGLSSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKL--PESVTSVTIHAEKTTWNIGVEGMPDGLDLDLQNVL............................................................................................................................................................................................................................................................................................................................................................................................................ 234
36 -13.500IDP05555 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo1413 [Listeria monocytogenes EGD-e]  ali follow..  10  140...............................................................................................................................................................................................................................................................................................................................................................................QVNYVDETNQTLATSDTLSTSPKAIDGYQVKETPTNATGTYTTNTETIQINYVYEKTAVEGANVSVEYINEATNESIAPAEVKEIDGYELSQVPSNQSGTYTDQTQSVIFKYKKITTPDEVAKDVTVTYKDTKGNQLADPVILKGDIGSTFETEAKSFKGYKLTKTPSNHSSVFTSDSQEVENKNISKKNTTKTVNQTGKTSTALQLPKTGDSENNLPLIIGVSLLISGVYIFTTRRK 436
37 -13.100CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]  ali follow..  10  212LKLIMSKRYDGSQQALDLKGLRS--------PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIPNLKILNLSGNELKSERELDKIKKLEELWLDGNSLCDTFRDQSTYISAIRERRLDGHELPPPIAFDVEAPTTLQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQ--HDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPAAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMKXMANEGEEIELTEFPETEKERKDEEKLSSCSEETTNTSSSSGSDHVPVPIEVNVIIQNSSRTEDELQNSKEIELTGFQGKLSSCSEETTAPSSSYSSKQASVFIEENGDNETSTYRPQNVLTNLNSLYTTFEDARAQGKGMVRHKSEDLQSFLEKYPPDFRKPKRDLSATWDPGMPTPPLPPRPANLGERQASTVRLHVKESNCKQPRERKANERNIVKDLKRLENKIN---LVVVILAVLLLVTVLSILH-MKS 876
38 -12.200IDP91710 gene: NXF1; nuclear RNA export factor 1 isoform 1 [Homo sapiens] NP_006353 [Homo sapiens]  ali follow..  13  212LKLIMSKRYDGSQQALDLKGLRS--------PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIPNLKILNLSGNELKSERELDKIKKLEELWLDGNSLCDTFRDQRERFPKLLRLDCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQ......................................................................................................................................................................................................................................................................................................................................................................................... 473
39 -12.000IDP91950 beta-N-acetylhexosaminidase [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100006639 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  9  644.................................FTLNQLKRIV---------DKASELGYSDV-HLLLGNDGLDDMTITANGKTYASDDVKKAIIAEVTELIEYAKSKDIGL----IPAINSPGLVAMEKLTTMDLKNEEAMNFVKALIGKYMDFKIFNFGTDEYANDATSAQGWYYLKWYQLYGKFAEYANTLAAMAKERGLQFYYEDKDDVQFDKDVLISNLASPQYLASKGYKFLNTNGD--ADRPSAEYKEEEIFELMTAFADHNKDYFRANYNALREELAKIPTNLEGYSKESLEALDAAKTALNYNLNRNKQAELDTLVANLKAALQGLKPAATHSGSLDENEVAANVETRPELITRTEEIPFEVIKKENPNLPAGQENIITAGVKGERTHYISVLTENGKTTETVLDSQVTKEVQVVEVGAPVTHKGDESGLAPTTEVKPRLDIQKEEIPFTTVTRENPLLLKGKTQVI--TKGVNGHRSNFYSVSTSADGKEVKTLVNSVVAQEAVTQIVEVGTMVTHVGDENGQAAIAEEKPKEIPSQPAPSTAPAEESKALPQDPAPVVIEKKLPETGTHDSAGLVVAGLMATLAAYGLTKRKED 1312
40 -9.640IDP05200 pepdidoglycan bound protein [Listeria monocytogenes EGD-e] lmo2714 [Listeria monocytogenes EGD-e]  ali follow..  19  106.................................................................................................................................................................................................................................................................................................................................................................................DYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDNEDGK-TTAVKLNYLVKEKTAQLTITDMNFDLETKIFTGKTKPFASVYMSSPADENFG-EGTTTADKDGYFYITAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDK----------------------------------VKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKGTEWFVVAGVIVILVAVLLLRKRKK 315
41 -9.270IDP05655 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0159 [Listeria monocytogenes EGD-e]  ali follow..  15  565................................................................................................................................................................................................................................................................................................................................................................................................QFVETSAPTGYKLDNSPVSFEVVAGETDQVVKVTKENTLEVGSVELTKLDSATKAT-ELQDKEGNTLQTGLTTDENGVLKVTDLVPGTYQFV-ETKAPIGYELDTTPVSFEIVAGETDPIVKVTKENTLVPPTPVPPTPVPPTPVPPPLPPVPYEPTVPPTKPEVPVTPKKTENSEDSPKTTPIRITQSLPKTGDTNSFAGLGVILIALSLSGLLLKRK.. 793
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.