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Query: IDP01994 hypothetical protein lmo1290 [Listeria monocytogenes EGD-e] lmo1290 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSVKSNIVKIGVCFAVLAVPVSQTTLPVFAAEQPGLKASQDNVNIPDSTFKAYLNGLLGQASTANITEAQMDSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNQISGLSNLERLRIMGADVTSDKIPNLSGLTNLTLLDLSHSAHDDSILTKINTLPKVTSIDLSYNGAITDIMPLKTMPELKSLNIQFDGVHDYRGIEDFPKLNTLLAYSQTIGGKKLINSDIKSSKLTYNAENQTLYVPFSLMTERTVNYDGYVPDFVKSTASSDTYFTMNEQQVNGNRLTITSDGLTVSDVSKTDFDNLEKMEYNARIDLSYQSYNTPEQFQNGGSYTISMPIYDHYFTVDHSLNITADSEKTYIENQLVTEATFLSDIHAKTDDGSTVTSDFADKVDFNTPGTYTVTLQSENNAGLKATPVQVNVTIKAKTTITADEKITYKVDTSKTEAAFLADIKATTNDGTAITSDFATVVDLSKPGKYVVTLNAENDLQKALPVQVMVIVEKETPIPDPTPTPTPDPTPTPDPSPTPNPVINPNVNKPEVPSYKIPSLTVNEKKAKAEPSKEALPKTGDSLPVAGATVGFLLIGLSWFVSRKKLast
1 -105.000IDP01994 hypothetical protein lmo1290 [Listeria monocytogenes EGD-e] lmo1290 [Listeria monocytogenes EGD-e]  ali  100  1MSVKSNIVKIGVCFAVLAVPVSQTTLPVFAAEQPGLKASQDNVNIPDSTFKAYLNGLLGQASTANITEAQMDSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNQISGLSNLERLRIMGADVTSDKIPNLSGLTNLTLLDLSHSAHDDSILTKINTLPKVTSIDLSYNGAITDIMPLKTMPELKSLNIQFDGVHDYRGIEDFPKLNTLLAYSQTIGGKKLINSDIKSSKLTYNAENQTLYVPFSLMTERTVNYDGYVPDFVKSTASSDTYFTMNEQQVNGNRLTITSDGLTVSDVSKTDFDNLEKMEYNARIDLSYQSYNTPEQFQNGGSYTISMPIYDHYFTVDHSLNITADSEKTYIENQLVTEATFLSDIHAKTDDGSTVTSDFADKVDFNTPGTYTVTLQSENNAGLKATPVQVNVTIKAKTTITADEKITYKVDTSKTEAAFLADIKATTNDGTAITSDFATVVDLSKPGKYVVTLNAENDLQKALPVQVMVIVEKETPIPDPTPTPTPDPTPTPDPSPTPNPVINPNVNKPEVPSYKIPSLTVNEKKAKAEPSKEALPKTGDSLPVAGATVGFLLIGLSWFVSRKK 598
2 -83.800IDP05426 hypothetical protein lmo0610 [Listeria monocytogenes EGD-e] lmo0610 [Listeria monocytogenes EGD-e]  ali follow..  47  1......MKKMGVKIGLCILLIMPFTISFSANVSAEENIAQDVVNIPDPALKSYLNGLLGQPSTSDITEAQMDTITDVTISNASLTDLTGLDYAHNLTILHLTNTGVTDYSLVANIPSLTNLNISGSNLTTNSIPDLNGLTNVTNLNLSSGKLDNSALTKFNKLPNLTFLNLDNNPSITDFMPLKSLPNLASLFIQFCGVNDFRGIDSFPKLTNLAAFGQNVGSAILINSTIKSSALNYNEANQTIFVPFTLMTERSMNFDGYLFPFTTNTASSSTYFTLNGVQISGSRLSIDDTGVTVSGITKDFFDSITKMEYNAFYDNPAGSYNSPPNFN---SYSVSSGTYDHYFDIDHSLTITNDSAISYGEQTTVTEEQFLKDVHAETDDGTPVTSDFNTIVDFSKPGVYTVTLNAENAAGLKATPTQVTVTILAKPVITADKSISYTKDTTKTEQQFLQDIAAKTSDGSKVTSDFDSVVDLAKVGTYKVTLNAVSADGNADPVIILVNVVAGNEPPTPPGPGPDPTPDPTPNPNNPN--------INPNPDNGQSAKSEIASNPSNSEVNIALPNTGDASQATTVLIGIILAGVAILFFRKR 586
3 -79.200IDP01918 hypothetical protein lmo0514 [Listeria monocytogenes EGD-e] lmo0514 [Listeria monocytogenes EGD-e]  ali follow..  34  1MKK-----------ALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALATGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGF-NDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMT---SYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGKADPVTVVVTVTTSDSGHVDPVPPTPQEETDQVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKS 603
4 -75.600IDP02661 hypothetical protein lmo1289 [Listeria monocytogenes EGD-e] lmo1289 [Listeria monocytogenes EGD-e]  ali follow..  38  2MSIKSNIMKIGVCSVMVLVPLSQTSLPSFAAEEIALKESQDVVNIPDPQLKKELNLYLNQAENADITEAQMATFRNITL-NSGIKDLTGIEYLKNITTLSI-NNINASYEPIQTLSSLEKLVINGENVNADIIPDLSVLSNLTFLDLSRTNIDDTIFSKISNIPNLNKLDISNNKGITKISELNNLPSLQELRVSDCQITNFKGIEKFPNLTAFYGDGQLFGDSFETDGFKNIKSSELTFDSIVTVNTILNYDGLSLPYNTNPDYTSIALGDQSYVVTNDKISINQQGILSDFTQADFDELEAFEVYLGFDSGNISKPANLANGTYSLKQIGSYRAFSVD-----------HSVNITAQDNISYIQNDTVTPEKFLTDIKADAN-GGTITSDLTDKVDFTKPGNYTVTLNAQNTKGLKGEPIQVTVTIIEKTVITADPEVTYDLNEAITEEEFLAEIKATTNDDTMITSDFESAVDFTKAGEYIVTLNAENDTQKAAPLTVKIRVNPKL---PDPVVPIPYPDPTPDPTPDPTVPVPTPEDSTSDDGGVQHSNSRNPRISISDSSLEKLPKTGDSLPESGVLLGFLTLALGIVIRKK. 593
5 -52.200IDP05076 hypothetical protein lmo0801 [Listeria monocytogenes EGD-e] lmo0801 [Listeria monocytogenes EGD-e]  ali follow..  26  1..MKKLCTVILFLTLLLNGFVPNAHAKTESPSADNNLQVAPPAAIPDPAMANEVLKSLNLKKLNKVTQTELNSLTGFQAINKGIKSIEGVEYLQNITELDVEKNQITDIAPVANLKKLTTLLINTNQITD--ISPVADLANLTTFYCGNNPISD--ISAVQNLTKLSIFNCYTA-NVEDISPVKNLVNLKTLSLGSNNIHDISDIEKLTALEYLSFSNNPVENPEVIGNLTNLNTLWLYNAQIRNIDFTANLPKLKSVYLYNNQISNISNWANIEYLELNNNQITDITPVANLTTLKTLKLNDQIITNRNNISDNGTYNSPTLSWNLNETKDNLSNATYSGTVIQPLTKDSTRPIITADGKVSYPEGTTKTTTEFLTDIHATTDDGSPIEVDLN-ALDFGTAGSYTVTLTAVDTAGNEATPVDVTIIITSKPVITADEKVSYPEGTTKTAAEFLTDIHATTDDGSPIEVDL-NAVDFGTAGSYTVTLNAVDAGNEATPIQVTIIITNSKKIDPIIPVEPGGNDVKPEKPNEPKDSEIPLSIIPKDNIEKTNSINVIKMIETNEIKNKMLPKTGDKLPL-TVFLGMLITLAGISYLRK. 646
6 -52.000IDP05423 gene: inlH; internalin H [Listeria monocytogenes EGD-e] lmo0263 [Listeria monocytogenes EGD-e]  ali follow..  13  1MKK-----RWNSVFKLVLMVTAILGLSLSQGVEVRAESITQPTAINVPALANAIKIAAGKSNVTDTTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYQNNLVV-PSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTVTQPLT-EAYTAVFDVDGKQTSVTVGANELIKEPTAPTKEGYTFTGWYDAKTGGTKWDFATDKMPAED-------------------------ITLYAQFTINSYTATFDIDGKLTTQKVTYQSLLEEPVAPTKDGYTFTGWYDAKTGGT---KWDFATGKMPAGNITLYAQFTKND-----------------------------NPNPDDPTTNTPTGNGDGTSNPSNSGGNTTLPTAGDENTMLPIFIGVFLLGTATLILRKT 544
7 -51.100IDP02569 gene: inlE; internalin E [Listeria monocytogenes EGD-e] lmo0264 [Listeria monocytogenes EGD-e]  ali follow..  16  2....KRNKTALRILVTLAVVLAITFWVGMSSKEVQAAVIEHPTPINEPVLTDNVKTLLGKADVTDETQTDLDSVTHLSAKSAGITTIEGLQYLTNLSELELIDNQVTDLNPLTNLTKITELRLSGNPLKD--VSALAGLKNLKTMDLIYTDITD--VTPLAGLSNLQVLNLDIN-QITDITPLAGLSNLQFLSFGSTQVSDLTPLANLSKLTTLNAMNSKVSDVSPLTGLSNLTEVYLEENQISDVSPLAKLPNLSIVTLTNQTITNQPVFYQNKPI-----------VPNVVTGLSGELIAPDTISDNGTYTSPNLTWDLNSFINSVSYTFNQSVTFTTAPFSGTVTQPLTEVYAVVFDVDGEQTSAMVGVNELINEPTAPAKEGYIFDGWYDAKTDGNKWDFGIDKMPASD-------------------------------------------------------------------------------------------ITLYAKFTENEEPNASSPINVEPNDNNSDNAEPNASSSNNVQENGTNEGINNLNSSGEDKVNIKLPITGDKLNVLPIFVGAVLIGIGLVLFRKK 495
8 -50.900IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  17  76.STEEENTPKNNLKSTSENSKTYAEL------------------FPDVNLAKIIAKNISGTENAEVSEAELQTITNLVATNQNITSLTGIEHLTALENINVNNNELTTIDSLFNIPTLKSISANNNKITGN-FSLVKTLPELHTLEVLGNAITELDIETLMNLPEIISVDISGNYLDSDDIHLENLPAVKNLDISSNELTRLPKINDFPLLTTINVRSNKIDRLESLVDVPKLATLNADKQAVTLSKTIAAGNFTIPNNVENLAGQMVTPKIISNNGTYSDQSIAWASGELSGLSKVSYTFDEVINSPAIAGKYTGTVNQITSDYSEVVDFATPGDYTVTLHAKNEFDLKADPVTVVVSNDISFEVGTELTSEVLLAKSGAVVTDLYDEAIKMESEVDSSKLGTYEATIIAKSKSGASSDPIKLSVKIVDTEIQINNPEIIIEKGSELTEGQIIDQVGITATDNYDQDLNIHSKVDTSKPGSYEVTIYTEDSSGNRSETVTITVKVPEARIGVKDIINPEFPVYSENNVTPELPSNNNNSVNGSRQTPSKSVKKQSKAYSKINQMPMNLPETGDSTNLLFIFMGVLLLAGLTLSKAKR 829
9 -47.500IDP05666 gene: inlA; internalin A [Listeria monocytogenes EGD-e] lmo0433 [Listeria monocytogenes EGD-e]  ali follow..  16  44INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSEYLNNLTQINFSNNQLTDITPKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ----TDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNANLLTEPAKPVKEGHTFVGWFDAQTGGTKWNFSTDKMPTNDINLYAQFSINSYTATFDNDGVTTSQTVDYVDGKSTTQAVDYQGLLKEPKAPTKAGYTFKGWYDEKTDGK---KWDFATDKMPANDITLYAQFTKNPVAPPTTGGNTPPTTNNGGNTTPPSANIPGSDTSNTSTGNSASTTSTMNAYDPYNSKEASLPTTGDSDNALYLLLGLLAVGTAMALTKKA 796
10 -45.600IDP05549 hypothetical protein lmo0549 [Listeria monocytogenes EGD-e] lmo0549 [Listeria monocytogenes EGD-e]  ali follow..  19  1MK--FNWKVVLLFVLILAFIVPVYSKAVETGKEVPKSPELLDDKFPDEGMAKTIANQLGRTENNNFTEVELNRMWYLTS-VATIGSIEGIQYLPNLYDVRLQDKQCKDLSPFNGYSQLYRLNINNGNISD--ISPLTELSTLNDIDLGGNNISD--LSLFPKLPNLEEISLERN-NISDVSPLAKFTKIKIFNLDENHITDLSSLTNMPNLQRLYVRYQTLDMEPVVTSSKYEFSIQPSIFGTTKPVKITATKPK-------------ATIDPITSKITYSAEEMAKKPFYYTPLFPGVTYSWDENFPLNGSNSLVDFRGTITQPLTYIE---------------------PPQVVSYNSGLTYEIGTSLTEQQFLNDVNLITDQPTTITSDFDKLKNLNTVGIYWVAVKASNIEGNAEANIMVTIKY-KPPVITADAEYTYLVGDKVNATQFRADVNATLTGEGTLRDDFIYKVRLNTAGDYVVTLTSPKSGYEQDAIPVTVIVHVKELLELQIPDEFRMDIDANADSVPISDKKQTLKCYGSSGKAELEVIDRRTVRQGWTITGAMTPFTNSGG...................... 593
11 -45.400IDP05699 hypothetical protein lmo2396 [Listeria monocytogenes EGD-e] lmo2396 [Listeria monocytogenes EGD-e]  ali follow..  18  1MYKLKIILALFLITTVFLPFSNVKAAPTDV------------VNIPDPVLNSGLKNIIGNPFLDEITEANMATITVADLSNGLIKDLTGLDKAVNMTKLYFSNSQIKNLDKIKNLPNLKKIVAVTTGLNN--ISALGEMPALEEVELGGDYITD--FTPLLEKENLTSFSYNSYINNDEFKNFTKLKSLVKLDLTWNNITDLSPLTENDHITNLNLNYNQFTNVAPIATMKNLKVLYLNNNNLTSIDALNTLRGLTIAYADNNNITDLSNLKNFFEA................................................................................................................................................................................................................................................................................................................................. 282
12 -45.200IDP05553 hypothetical protein lmo1136 [Listeria monocytogenes EGD-e] lmo1136 [Listeria monocytogenes EGD-e]  ali follow..  15  2......KKTIKITTSLLLSFACVFSIGDFTKPHTVEAEIVYSLTFTDPKLAQVVADWLKLPAATSSTQTQLNTIKALHFDSKGVQSLEGVEYLKNLTQVFGYGNQVSDLGPLSNLTKLEVIQMPRNQISD--LTPIANLTALMSLDFEFNNLQT--IEPIKNLTNMLELNVSAN-PISDINAVKNMTQLEFLTLRDCEVSDLSPVENLSNMLMFWAGRNNISDITPLKNMSKLLGLSLFGNQIKDVSVIKNLTS-------------------LEDFDIKANQVSDISSLATSTTLETLTLSFNQIIDISPLKNLTNLTRLELENQTRA............................................................................................................................................................................................................................................................................. 309
13 -44.600IDP00034 internalin, putative BA_1346 [Bacillus anthracis str. Ames]  ali follow..  15  8ILDYSALKYMPNLKSLTVANAKIKDPSFFANLKQLNHLALRGNEFSDVKMDHLDSLDLSNNKITNVAPIEMKNVKSLYLSGNQIEDVTALAKMEQLDYLNLANNKITNVAPLSALKNVTYLTLAGNQIED--IKPLYSL-PLTDLVLTRNKVKD--LSGIEQMKQLEELWIGKN-EIKDVTPLSKMTQLKQLHLPNNELKDITPLSSLVNLQKLDLEANYISDLTPASNLKKLVFLSFVANEIRDVRPVIELSKTAYINVQNQKVFLEENKEVKVPIYEKDGKISTKIRLKGEGGTYSNDAVKWSTPGEKVYEFGVKDP....................................................................................................................................................................................................................................................................................... 328
14 -43.400IDP91680 INLB_LISMO [Listeria monocytogenes]  ali follow..  15  11YCLISGLAIIFSLWIIIGNGAKVQAETITVP-------TPIKQIFSDDAFAETIKDNLKKKSVTDAVQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGT.................................................................................................................................................................................................................................................................... 342
15 -42.200IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames]  ali follow..  14  260IENVEPLVNLEKLDILELQNNRIADVTPLSQLKKVRTINLSGNKISDYNVSSLRKLYVSNNKITDFTGEQLNKLGTLGVGSNGLVNIEPISQMSGIVELNLEKNDIKDITSLSKLTGLQSLNLEENYVSD--VSSLSNLINLYELKLATNEIRD--IRPIQELGKRIKIDAQRQEGITDFSGLEFMTNVEELTLQNVNMKNAEFISSLRNLKSVDLSYNQIEDIKPLHSLEDLEKLNVSDNGIKNVPELFKMQKLKTLDLSNNKLDNAHQLENLDALLVNNNEINNLDEISKVSKLNKLEMMSNKVRDISPLASLKNLQWLNLSDNKIQDISTLSSMLLSLKLAGNEIRDVRPVIQLAQWITVDIKNQKIVLED-EIQIPIYDLEGEIFEDGNYHGLSLLFSGTVTQNIVAKEEPKEPVEEVEEEVKEPAKEVEGPKEEVKEPTKEVEGPKEEVKEPTKEVEGPKEEVKEPMKEVEGSKEEVKGPTKEAEGSKEEVKEPTTEVEGSKEVKEPGKEVEGS---KDAINQSAVAQETNVNNQVGKEKVVENQNMKENKPAVTKQEESKKSLGATGGQENTSTLLSGLALVLSALFVFRKR 1066
16 -40.500IDP02719 gene: inlG; internalin G [Listeria monocytogenes EGD-e] lmo0262 [Listeria monocytogenes EGD-e]  ali follow..  13  1.........................................................MKQRKTSVLHVLVVTAILGISL------WVNASHGMKAQAESIAQPAPINEIFTDPALADEVKTELGKTSVTD--EVTQTDLNQITKLEADDKGINS--IEGIQYLTNLNMLGVSSN-QITNITPLANLTNLDSLYLGDNKISDVTPLSGLTQLTFVQLSINQIKDVTPLANLTKLNYLDLRENQISDASPLVNMTDLTVLHLEKQQITAAPVVYQTNLVAPDILKNAYGEVVPPTTISNNGTFASPNITWNLDSFTSEVSYDFNQKITLGDNGKVTFAGTVVQPIVEAPVNYITTFDVDGTTTT-----ENVVVDTLITEPAEPTKEGYTFSGWYDAETGGNEWDFAVDKMPATN------------MTLYAQFTINSYTATFDVDGETTNQKVDYQALLQEPTAPTKDGYTFVGWYDAKTGG---TEWDFATSKMPTSDITLYAR--------------------------TKNPSSDNSQTAPGKDDKNDKDKLTIKANDSADATSTKLPKTSDDSSMIPTILGTLFIGGAILILRK. 485
17 -38.900IDP05548 hypothetical protein lmo0409 [Listeria monocytogenes EGD-e] lmo0409 [Listeria monocytogenes EGD-e]  ali follow..  16  8FKQITTIMTVVSLLIMVLGIQGNNDVKAAPQVAPPASINQ----FPDADLAEGIRAELQKSSVTDVVTEELESISQLSVYAKKIASIEGLEYLTNLKFLNLNGNQITDLSPLSNLTKLTEIYIGDNKISD--ISPLQNLTNVTDLYLVDNDISD--LRPLANLTQMYSLRLGGNSNISDLNPVRNMTRLNNLEVTGSILKDLTPLADVTSLTRLTLSDNQIEDLSPLAGLTKLDNIAAYSNKITDITPVTNLTRLQYLDLGSNEITDLSNLQKLTSLHLANNQITNISMLEDLTNLTSLGLQNNKISDISVLKNLTHVTYLQLGYNQIVDVKIIGGLTTSLQLTQNHITDISPLANLTKIQYSDFSNQMITNLERNFSKTLSVP...................................................................................................................................................................................................................... 390
18 -38.100IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  21  402LTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLDLKENQITSTDLPRLSYLDVSVNNLTTIGDKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISD--ISMIHDMPNLRKVDASNNLITN--IGTFDNLPKLQSLDVHSN-RITSTSVIHDLPSLETFNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLIVSDNNSGNLSSLSDLTNLTELNLRNNVYIDLSTLSRLIYLNLDSNKIEDISALSNLTNLQELTLENNKIENISALSDLENLNKLVVSKNKIIDISPVANMV-AIVTASNQTYTLPTVKVTADAEQTYTIGDTISEEQFLKDVNAKSSDGAPVTSDFATVVDLNTFGEYEVTLTSEKDGIQGDSCKVIVKVLHGAPVISADQTISYDKHATITEKQFLEDIHASTDLDTAITTNFSTAVNLNKGGDYTVALNSENEDGVKAE.................................................................................................... 1009
19 -36.600IDP01745 hypothetical protein lmo2821 [Listeria monocytogenes EGD-e] lmo2821 [Listeria monocytogenes EGD-e]  ali follow..  16  16......MVSNPLLTFAATNDVIDNTTEITTNTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDVNPLTELDVSTLSKLTTLHCIQTDLLEID-LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGNATAKQIDGYTLSAEPTNATGQFTSSAQTVNYIYTKNPAPEKGVVEIHYVDEDNKQLNSTTEISGTIGDNYT-------TEPKTIEGYTLTTTPGNATGTFTTGSQTVTYVYTKNIEAAEPITVNYVDANGKTLAPSETLNGNVGDTYKATAKQIDGYTLSAEPTNATGQFTSSAQTVNYIYTKVKKASDTLPKTGDSAPWKSALLGVFLSSTALVIWKKK 850
20 -33.400IDP05755 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0732 [Listeria monocytogenes EGD-e]  ali follow..  13  5.................................................................FLCLSAIVLSLNFVWINPITG-KIETTKETNQQVNLKNNVTDIVTSLGGQTWLNEVNRQLAPKTVDVNLTFEDLAKITTISLNNRSLTGEVPPEIKNLVSLQRLYLFSNKLSGEIAELGELTKLTELRLDYNELSGKIP-DGLGNISEIALQNNRLVGQIPLSNRTGKNEVNVSGNQVTINSQNSFISNLTNDMNLTPFLKNSPTFINLQVVYMFNSELFDLPVPAHDLTVNYVDEAGAEIHE-DDYDVTTPEFELAIDKYELDTEQMPTNGLGTLSSEAQTVTYVYKKVNGAPVTVKYEDQN--------VEITTSDVLTGKLDATYQSKAKEIAGFTLDNSKLPANASGIFETNPQTVTYVYQPATIKAHDSTIYVEDKWSAEDNFDSAVNSVGAAVSFDDLEVEGTVDTTKAGVYPVTYSFAGE-----SVTINVTVKAKDLPAPPVTPTKPVVPIQPTNPDQPDIQAAPGEHQASTDKSEALKVTVAQKEQPTVAGNLKLPTTGDNDSVLYSVFGLIAVAFSLFFWRKK 634
21 -32.500IDP02440 hypothetical protein lmo0331 [Listeria monocytogenes EGD-e] lmo0331 [Listeria monocytogenes EGD-e]  ali follow..  12  35......MKTENQLLKTDLKETPKEKTNNLKNQLVQAGTKTYNDYFPDDNLAKEVAETMNKNADESVTVEELAKVTKLDARSQGIEDSTGIEYLTGLEVLNLEDNQLKSID-VSKNLNLKELTCSNNPLANLD---VSKNLALEELTCENNELTQLDVSQNTALEQLTKLDVSKNSALRYLADVSKNPALTNLGCTKNQLTDLD-VSQNPNLGTLVCSDNQLTNLD-VSQNQALENLACDNNELKNID-INQALSLKELSNNQLTNLDTTQNLALEILYCDDNQLTDLD-VRKNVNLLILFCNNNQLTNLAVGETIAKVRCNNNQLKDVS............................................................................................................................................................................................................................................................................. 369
22 -30.900IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  13  2......................................................................KKKFVYLLLLVLFMTVLFQMLEAQAASTSWIEQEGNEPFITLADLETIQKIHV--FGADSIP-NKISDYKNLTALEANYGTITEVP-ESVGSLKELVTLNVDENN-LQEFMVIFQLPKLEVLYISRGNITEIPTITTLSHLKVLDVSNQKLVTIDSILTTNWKAMHDGKLGMSLAGNQIASDIPANYLDNFNSGGNMLEFITIKSTLSTNSNPFAKVVPIKVTAPLKGADVTVQYLDSNDTLATPDILSGNEGDAYASTPKTIDGYTLTQTPTNAQGTFTEEPQTVIYVYTKNSVAAAPVT-----KILTASDNLTGNVDDPYQTKAKEFAGYTLDESKLPTNASGVFKTAQTVTYVYKTIPASIKAHDSTMNVGDTWSAKDNFDSAVDSLGVAVPFDEKVDGSVDTTKAGVYPVTYSFAGD-------SVTIKVTVKATVVPAPPITPIKPVVPAPANPN-----TPSTQQTPTKQSGTLKIKATHQEQPIVAGNLKLPTTGDNLWDSVLYFGFITVCLSFVLFFRL 620
23 -30.800IDP95476 internalin [Listeria monocytogenes EGD-e] NP_465993 [Listeria monocytogenes EGD-e]  ali follow..  13  41IIDVFPDDGLAKDMAKNLNKDSVNDVIDQDDLDALTGLGFETSTITNDSMQLLERAMFN----------NVTDVSIMEFGAKEFPDITTIPHLKTLFFADPPGRLTRNLPNYQNYPEMDTITMSGNNLIG-SIPDFTGMPALKQLYMSEMLITSDELPNFNNIPLLITLDLSSN-QLTTIPDFQNIPNLTFLDLNANLLTNTPDFQNLPKLTDLNLRHNNLTGTMVYTNLPSLESLNLDYNFLTELPS.............................................................................................................................................................................................................................................................................................................................................................. 281
24 -30.400IDP95186 gene: lmo2445; lmo2445 [Listeria monocytogenes EGD-e] CAD00523 [Listeria monocytogenes EGD-e]  ali follow..  17  4........................APTIKAQADTVPLPAPIIEAFPVEAIAEAIAGELDKDSVNDTITQTAIPLPSLGLTGEDLSVL-NNEVFTNAIELAIWSNNIGELPDSEALPALENIEANGANITVF---PDANYPNLTNVDLSQNNFGFN-IPKFVGMEGLVSINMENA-GLSGYIAWMNMPNLDSLILNENHLISIEDIFLSQQLGTHSFANQTATYPTTIKQGENLKVFVPFIYQALD................................................................................................................................................................................................................................................................................................................................................................. 230
25 -29.900CPX_91662_05666 Complex of CADH1_HUMAN with INLA_LISMO [Undefined organism]  ali follow..  16 1015IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRIT---NYKANVSIPNTVKNVTGALIAPATISD----SYTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKTNDINLYAQFSINSYTATFDNDGVTTSQT-LLQEPTAPTKEGYTFKGWYDAKTGGDKWDFATSKMPAKN------------ITLYAQYSANSYTATFDVDGKSTTQAVDYQGLLKEPKAPTKAGYTFKGWYDEKTDGK---KWDFATDKMPANDITLYAQFTKNPVAPPTTGGNTPPTTNNGGNTTPPSANIPGSDTSNTSTGNSASTTSTMNAYDPYNSKEASLPTTGDSDNALYLLLGLLAVGTAMALTKK. 1678
26 -29.800IDP05081 putative cell surface protein, internalin proteins [Listeria monocytogenes EGD-e] lmo2027 [Listeria monocytogenes EGD-e]  ali follow..  13  1..MKKILTGLSTT--LLLTVLLLTITGGDLKAKAASDLYPLPAPIPDEGLAKDMAKNLNKDSVNDIDQDDLDALTGLGFETETITNMQLLENNVNIVSVMEFGEDLTEFPDISTIPHLNTLFFNTPPEGNLSLPDYQNYPEMVTITMSGSNLIGA-IPDFTGMPDLSQLYMADM-MITSDDVFHTIPKLSTLDLSHNQLTNLPDFQNLTNLAELNLSFNNLTNTTNFTNLSNLNNLNLDYNHLNELPS.............................................................................................................................................................................................................................................................................................................................................................. 259
27 -25.600IDP91625 gene: ECs2073; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB35496 [Escherichia coli O157:H7 str. Sakai]  ali follow..  14  31NKWKEERILTGEIHRPECRNEAAKRIN-CAFLSKQNDIDLSGLNLSTPGLQNFTSINLDNNQLTHFDATNYDRLVKLSLNSNTLESINHQGRNVSITHISMNNNCLRNI-DIDRLSSITYFSAAHNKLEFV---QLESCEWLQYLNLSHNQLTDIVTG---NKEELLLLDLSHN-KLASL-HNALFPNLNTLLINNNLLSEIKMYSNFCKVQTLNAANNQLEKINLLTYLSSIKSLRLDNNKITRIENTSDIRSLFPIISESLNFLNISGENNCPTIQLMLFNLFSPAL..................................................................................................................................................................................................................................................................................................................... 319
28 -22.000IDP92552 gene: NOD2; nucleotide-binding oligomerization domain-containing protein 2 [Homo sapiens] NP_071445 [Homo sapiens]  ali follow..  13  753.RLARKAARGLNVGHLKLTFCSVGPTEVLQHLRRPVALQLDYNSVGDIGVEQLLPC--------------LGVCKALYLRDNNISDIECALHCEQLQKLALFNNKLTD-KLLACRQNFLALRLGNNYITAAGAQVLAEGTSLQFLGFWGNRVGDEGAQALAEAQSLRWLSLVGNN-IGSALMLAKNVMLEELCLEENHLQDAEGLKKNSSLKILKLSNNCITYLQALERNDTILEVWLRGNTFSL................................................................................................................................................................................................................................................................................................................................................................. 1025
29 -21.400IDP91701 gene: SLIT3; slit homolog 3 protein precursor [Homo sapiens] NP_003053 [Homo sapiens]  ali follow..  11  8..................VGAAVRARLALALALASVLSGPPAVACPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKFAGLKNLRVLHLEDNQVSVIERFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIPRKAFRGITDVKNLQLDNN-HISCIEAFRALRDLEILTLNNNNISRILSFNHMPKIRTLRLHSNHLYHLAWLSDWLRQRRTVGQFTLCMAPVHLRGFNNIVDCRGKGLMEIPANLPEGIVEIRLEQNSIKAAGAFTQYKKLKRIDISKNQISDIDAFQGLKSLTSLVLYGNKITEIAKVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTIS................................................................................................................................................................................................................................ 419
30 -18.700IDP91619 gene: ECs2672; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36095 [Escherichia coli O157:H7 str. Sakai]  ali follow..  8  11.TQSVQLNKITSNTESTIKQHELVSDDAIIN-----------------ELSSELVSCLGNDKFTPVSEDLLNMLSEFKLLREQCFRWNYTLLFENYGAYDKTGSITIEKSQEGTLPIRHKLEFISTNIAEDKLTKITDALHSNELNLSSLSLGSVP----PLPEWIEMLSLVYN----ELDSIQVPESCKELELDFNNLTEFPQV--PDGITLISVNNNLISYIDSFPP--KAKKIFICHNKLSEIPALPDTAKVFDCSENNIKEIR-WFPKNLKEAYIEYNKIEVIPAIPG--NLKLLCMKCNPIKEA................................................................................................................................................................................................................................................................................................. 329
31 -18.400IDP91618 gene: ECs2674; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36097 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  126.ELLDKLTKITDARLCKGFSDWASSVKEGGSNDLKENVDRALVRMFKCVKLHSNELDLSYLFLGSVPPL-PDWIEMLSLVYNELDS---IQVPESCKELELDFNNLTEFPQV--PDGITLISVNNNLISHID----SFPPKAKKIFISHNKLSETP----AIPDTAKVFDCGYN-KIQEIRYF--PKNLKEARIGYNNIEVVPAI--PGNLKILFMECNPIKEAFLMPW--TLTGICYEISQRKYIVTN............................................................................................................................................................................................................................................................................................................................................................. 352
32 -18.000IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  13  1MKIFIALIALVVIINTVSFTSVSASTPTWLEQTMNNNEPFIKEIETETG-----------KTRANITQTDLEAITALRV--TGASDIANIDMLTHLTLLKAVQGTISSVNSVGNLKELKILNLNTNHLSNFP-TIVYQLPKLEELQLNDGTIEEIPATITNMASHLKFLTVN-NNRLVKVP--SSTGELDLFTTGNQIVTDIP........................................................................................................................................................................................................................................................................................................................................................................................................... 200
33 -16.100IDP05226 putative membrane associated lipoprotein [Listeria monocytogenes EGD-e] lmo0460 [Listeria monocytogenes EGD-e]  ali follow..  15  171.................................NLSRVTSFALAFYSSGIEKVIIRDNNYPTAPSLLTKNCSNLMEVDLSGLDTSAVTTMWDMRALEELDVSHFDTSSVTNMSYMRNLEVLDVSNLDTSS--VTNMYAMTSLEELDVSH---DTSSVTDMYRVEKLKKLDVSNTSSATAMVQMRNCSALEKLDVSNFNTSLVTDMRAMTSLEALDVSNFDTSSVTNMAAMEKVEKLDLSTFDTSSVTNMGTM.......................................................................................................................................................................................................................................................................................................................................................... 417
34 -13.400IDP05657 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0175 [Listeria monocytogenes EGD-e]  ali follow..  21  185......................................................................................................................................................................................................................................................................................................................................................................ETEITYSPGSDVTEEQFLTDIHASVTDNYDSTSNFTSAVNLAVSGDYSVNVQATDKAGNVSNTLNVTVHVSTPAPVAGANITVNHLDSNGNKIAESDTLTGVVNSNQSESKKITGYTLETTPTNATGTFT-------DTPQTVDYIYKKDTVTPTPITVNPVEPVKPVNPVVN----------KPVTVKPANDNTNPSTSNSVEKTTYSSLPTTGDTDQSSTIFGALLLLISAPLLLFKK 414
35 -12.900IDP91566 gene: ECs1568; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34991 [Escherichia coli O157:H7 str. Sakai]  ali follow..  14  4............................................................TSQLRPTGTFCSYSAETSADIKSEITPIQIEEARASGRLYIKDCDIEYLPQL--PNEITSVTIENCN----NLTTLTGLVNTQNLSVIN--CEKLQITDMP--STVKNLHIE----LTDSPFIHFISGIECLTVCHCYISGVP-----ESVRYLEIKGSATDSIKNVPN--GLSSLSINS...................................................................................................................................................................................................................................................................................................................................................................... 164
36 -11.800CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]  ali follow..  9  238............................................LVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVNLKILNLSGNELKSERELDKIKKLEELWLDGNSLCDTFRDQRERFPKLLRLD---DSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLRNVKKLKDPTLRFRLLK-VAFLNELPKTQH----NSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFMKXMANEGEEIELTEFPETEKERKDEEKLSSCSEETTNTSSSSGSDHVPVPIEVNVIIQNSSRTEDELQNSKEIELTGFQGKLSSCSEETTAPSSSYSSKQASVFIEENGDNETSTYRPQNVLTNLNSLYTTFEDARAQGKGMVRHKSEDLQSFLEKYPPDFRKPKRDLSATWDPGMPTPPLPPRPANLGERQASTVRLHVKESNCKQPRERKANERN-LVVVILAVLLLVTVLSILH.. 871
37 -10.400IDP91710 gene: NXF1; nuclear RNA export factor 1 isoform 1 [Homo sapiens] NP_006353 [Homo sapiens]  ali follow..  14  174................................................AVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLI-----MSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIE-------------------ENIPELLSLNLSNNR-LYRLDDMSSIPNLKILNLSGNELKSERELDKIKKLEELWLDGNSLCD....................................................................................................................................................................................................................................................................................................................................................................................... 329
38 -9.590IDP05555 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo1413 [Listeria monocytogenes EGD-e]  ali follow..  14  263...............................................................................................................................................................................................................................................................................................................................................................................................................DQTQSVIFKYKKITTPDEVAKDVTVTYKDTKGNQLADPVILKGDIGSTFE-------TEAKSFKGYKLTKTPSNHSSVFTSDSQEVEYVYSKDDAVITPPVT--------------------PVNPDKPIINPVKPVNPATSTVPNKNISKKNTTKTVNQTGKTSTALQLPKTGDSENNLPLIIGVSLLISGVYIFRKR 437
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.