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Query: IDP02001 putative type III secretion apparatus [Yersinia pestis CO92] YPO0261 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst MSLLSADCRQLVVEAALAGVNHSLLAEAHDIVNALPLLIPDPQVRLVCEAMLRFGLGDKVQARALLATSGEEDAQILLGLLQLast
1 -49.700IDP02001 putative type III secretion apparatus [Yersinia pestis CO92] YPO0261 [Yersinia pestis CO92]  ali  100  1MSLLSADCRQLVVEAALAGVNHSLLAEAHDIVNALPLLIPDPQVRLVCEAMLRFGLGDKVQARALLATSGEEDAQILLGLLQ 82
2 -47.900IDP93817 putative type III secretion apparatus [Yersinia enterocolitica subsp. palearctica Y11] YP_006007032 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  74  1MILLSAPCRQLVVEAALAGVNHSLLAEARDILNVLPQLIPDPQVRLVCEAMLLFGLNQQSEALALLASSSSPEAQGILVLLQ 82
3 -24.900IDP91492 putative type III secretion protein [Vibrio parahaemolyticus RIMD 2210633] VP1693 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  22  1...MERELRQLLAEIALMATGMHRHQEANTIADCLEETSNSEEVVVMIRAMSLMNKGAYEEAHRLLEPLCTAYPDLISLA.. 77
4 -14.300IDP90409 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_667 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  18  6...VFKEDFALLFEAGMVAIKQGDEASAKALFQALQVLDPEHTAHELGSGLLHLHKMELTKAEVLFRAI............. 71
5 -14.000IDP04289 gene: yscY; hypothetical protein YPCD1.35c [Yersinia pestis CO92] YPCD1.35c [Yersinia pestis CO92]  ali follow..  12  5...LTKRQQEFLLLNGWLQLQCGHAERACILLDALLTLNPEHLAGRRCRLVALLNNNQGERAEKEAQWL............. 70
6 -13.600IDP91307 putative YscY [Vibrio parahaemolyticus RIMD 2210633] VP1663 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  22  1..MLSTKDIELLLVHAALQVQYQQPDQAIAILDAVLELEPEREDALHTLAVACLQTGRYTRAVAVCEGL............. 67
7 -12.600IDP93896 secretion system chaperone SscA [Yersinia enterocolitica subsp. palearctica Y11] YP_006007024 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  11  25...MDPQDLALVYDYSVQLCQGGEYDGAKRLLNLLVRFDHWNFSYWLTLGLCYQQTADFHQAIYCFSRAGQIQVDDPRSSCS 103
8 -12.600IDP93914 type III secretion apparatus protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007694 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  11  38...IPQSTMDGLYAYAYEFYEQGKLKEAETFFRFLSIYDFYNTDYVMGLAAVYQLTKRYEKAVELYSLAFVLAKDDYRPLFH 116
9 -12.400IDP91180 gene: lcrH_1; low calcium response protein H [Chlamydia trachomatis D/UW-3/CX] CT576 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  11  73...LSDVLLEEIYTVAYTFYSQGKYQEAIGLFQILTASKPQCYKYILGLSSCYHQLKMYDEAAFGFFLAFDAQPENPIPPYY 151
10 -12.400IDP93884 secretion system chaperone SscB [Yersinia enterocolitica subsp. palearctica Y11] YP_006007028 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  15  30...VSQQEIQARYEQGYQAWLADNYITAVEDFSWLTLHRPLEPHFHLALAGALQMQQEFILALSAYASALLLEAKSPGPVYQ 108
11 -12.100IDP90377 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_274 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  13  12...WGDEELEELRISGYSFLRQGHYQKAILFFEALVILDPLSVYDFQTLGGLYLQISENTKALYVLDQALRMQGDHLPTLLN 90
12 -10.700IDP91182 gene: lcrH_2; type III secretion chaperone [Chlamydia trachomatis D/UW-3/CX] CT862 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  13  75...LSSEDLEQVYKEGYNAYLQGDYEESSTAFYWLIFFNPFVSKFWFSLGASLHMLQKYQQALHAYGVA............. 140
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.