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Query: IDP02076 putative methyl-accepting chemotaxis protein [Salmonella typhimurium LT2] STM3216 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFLHNIKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQNIITNDYPTTVKANLLIDNFNDFIIAQQLMLLDEEGRWSQSSQKELDEISQRITALLDELSSNRHDAASQKIITEIREARQQYLESRFRILQDIQSHNRQAAIQEMMTRTVQVQKVYKDKVQELIAVQDAQMHNAGVQVEGDFKTNRTLLITLALISIAAGCVMGWYIVRSITRPLDEAVRFAEAIADGDLTRHITTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTAAAQIVAGNQDLAARTEEQASSVEETAASMEQITATVKNTADHTSEATKLSAGAASVVKNNGEMMNQVTQKMRVINDTANRMSDIINIIDSIAFQTNILALNAAVEAARAGEHGRGFAVVAGEVRQLAQKSASSASEIRNLIEDSTSQTQEGMHLVEKASALINGMVDNVEEMDVILREIGQASREQTDGISQINSAIGLIDAATQQNSCLVEESVAAAASLNEQALHLKELVNVFRVREEDTQPALast
1 -118.000IDP02076 putative methyl-accepting chemotaxis protein [Salmonella typhimurium LT2] STM3216 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MFLHNIKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQNIITNDYPTTVKANLLIDNFNDFIIAQQLMLLDEEGRWSQSSQKELDEISQRITALLDELSSNRHDAASQKIITEIREARQQYLESRFRILQDIQSHNRQAAIQEMMTRTVQVQKVYKDKVQELIAVQDAQMHNAGVQVEGDFKTNRTLLITLALISIAAGCVMGWYIVRSITRPLDEAVRFAEAIADGDLTRHITTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTAAAQIVAGNQDLAARTEEQASSVEETAASMEQITATVKNTADHTSEATKLSAGAASVVKNNGEMMNQVTQKMRVINDTANRMSDIINIIDSIAFQTNILALNAAVEAARAGEHGRGFAVVAGEVRQLAQKSASSASEIRNLIEDSTSQTQEGMHLVEKASALINGMVDNVEEMDVILREIGQASREQTDGISQINSAIGLIDAATQQNSCLVEESVAAAASLNEQALHLKELVNVFRVREEDTQPA 521
2 -109.000IDP01940 gene: trg; methyl-accepting chemotaxis protein III [Salmonella typhimurium LT2] STM1626 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  32  16..LHHIRLVPLFSSILGGILLLFALSAGLAGYFLLQADRDQRDVTDEIQVRMGLSNSANHTARINMIHAGAASRIAEMDEMKANIAAAETRIKQSQDGFNAYMSRVKTPADDALDNELNARYTAYINGLQPMLKFAKNGMFEAIINHENEQAKQLDAAYNHVLLKAIELRTERARLLSEQAYQRTRLGMMFMIGAFTLALVLTLMTFMVLRRTVIQPLQQSASRIERIAAGDLTMADEPTGRSEIGRLSHHLQQMQHALQQTVGAVRQGAEEIYRGTSEITAGNTDLSSRTEQQAAAIEQTAASMEQLTATVKQNADNAHHASKLAEDASGKASRGGQMVSGVVQTMGNISTSSKKISEITAVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLIGASVSLIEQGSEEVIAAGSTMNEIVDAVKRVTDIMLDIAAASDEQSRGIVQVSQAISEMDRVTQQNASLVEEASAAARSLEEQAARLTQAVDAFRLHDTGATMR 537
3 -108.000IDP02460 gene: cheD; methyl-accepting chemotaxis protein [Yersinia pestis CO92] YPO1675 [Yersinia pestis CO92]  ali follow..  31  2..FKRMKVVTSLLLVLVLFGALQLVSGGLFFKSLQNDQENFNVLQVIRQQQSVLNESWVYLLQTGVRYMMDINHTGSGPTVKDLISSAKGTLSVAEDRFKRYEKIPNSSQDPEGAKKLKQSYEEYFSALTELINLMETNK---INEFFNHPTTSFQNEFEQNYNNYLTQNDGLYDSAVEDSNQSFSFAMGVVITVLVVVLVMMLLVWLGMQQILIHPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVLSVDNSNST 525
4 -108.000IDP01089 gene: tsr; methyl-accepting chemotaxis protein I STM4533 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  33  2..LKRIKIVTSLLLVLALFGLLQLTSGGLFFNSLKNDKENFTVLQTIRQQQSALNATWVELLQTGIRWMMDQSNIGSGATVAELMQGATNTLKLTEKNWEQYEALPDPRQSEAAFLEIKRTYDIYHGALAELIQLLGAGKINEF---FDQPTQSYQDAFEKQYMAYMQQNDRLYDIAVEDNNSSYNQAMWVLVSVLIAVLVVIIAVWFGIKLSLIAPMNRLIESIRHIASGDLVKRIDVEGSNEMGQLAENLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDIASSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVSRVDVGSTLVESAGETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNASLVEESAAAAAALEEQASRLTQAVAVFRIHQQQQRAR 525
5 -108.000IDP01047 putative methyl-accepting chemotaxis protein STM3152 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  34  4..LQNFTIRMVMLTILGLFCLLWSGVGLYSVHALSEVSE-GNDIDRHLVRQMTVLSQGNDQYFRFVTRLSRAM-DVKIGGGTPDFAPARQSLENMRQKLEEMKALSPGPMNPDISREVLSNWQALLEGVVPQMQLAQQGSLTAWSEHASTVTPALSRAFGASAERFSHEAGAMLDNTRVMVDGKTYTIRILLITAVILGIAILIFTDRYLVAMMVKPLERIRQQFQRIAQGDLSQPIEALGRNCVGRLVPLLRAMQDSLREAVSTIRAGSDNIWRGATEISTGNNDLSSRTEEQAAALEETAASMEQLTATVKMNAEHARQASQLADAASLTAGKGGELVSDVVETMNGISASSQQIAEITTVINSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAGAAKEIEALIGESVRRVAQGAQLVQETGATMDAILRGVTEVTTIMKQIASASEEQSKGISQVGVAITQMDSVTQQNAALVEQVSAAAAALERQTEDLQRSVQQFRLSASEPQQR 521
6 -107.000IDP02090 gene: tcp; methyl-accepting transmembrane citrate/phenol chemoreceptor [Salmonella typhimurium LT2] STM3577 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  32  1..MKNIKVITGVIATLGIFSALLLVTGILFYSAVSSDRLNFQNASALSYQQQELGGSFQTLIETRVTINRVAIRMLKNQRDPASLDAMNTLLTNAGASLNEAEKHAIAGKDPALDAQAEASFKQMYDVLQQSIHYLKADNYAAYGN---LDAQKAQDDMEQVYDQWLSQNAQLIKLASDQNQSSFTQMQWTLGIILLIVLIVLAFIWLGLQRVLLRPLQRIMAHIQTIADGDLTHEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSIYTGAGEISAGSSDLSSRTEQQASALEETAASMEQLTATVRQNTDNARQATGLAKTASETARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTQQNASLVEESAAAAAALEDQANELRQAVAAFRIQKQPRREA 524
7 -96.400IDP01957 putative methyl-accepting chemotaxis protein [Salmonella typhimurium LT2] STM1657 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  33  2.............................................................................................................................................................LRNISVRTCIILFMVCAFLLVDTLQIAFLHDLPILITCNIIYLISALLLWWYMTCYLVVPINTVKKSIEEVAAGNLSIHISEFGNNCAGRLIPGINSLSENISALVREIRSSSQTAMTLSEQLAARSLSLSVKTEQQSASLIQTAASIDEMAASTKNNADNTRMASIQADCATQCARKGGELMVRVTENMRSITDCASQMTEIISLIDGIAFQTNILALNAAVEAARAGDHGKGFSVVAGEVRNLAHRSAEAAKSIKALIDVTHDNVRQGAAIVQEAEKNMQEIVGGSGQLNVLMSEISTTTREQEKGINQITLALSDLESATHSNVLMVEALSASSDVLKAQVIELQTKTDKFRLSQPGYSEH 365
8 -91.400IDP02252 gene: tsr2; putative methyl-accepting chemotaxis protein [Yersinia pestis CO92] YPO1229 [Yersinia pestis CO92]  ali follow..  39  259..................................................................................................................................................................................SQATAGIHSLLTTSLVTLVIIIFISAGVIALITQRALTPLTHIQQAMDAISSGDLTQRLPIEGRDEVAQIARSFNQFADKLSLVMAQIRGTSESVRVAANEIAAGNQDLSGRTESAAASLQQTSAALEQISATVAQSASAARQANNAVFSASEDASRGGDVITKVITTMESIEKASGKIGDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRILAQRSAQAAKEIKALIESTVSSVASGSSQVRQASNAMTDIVSSVSDVTTIMSEITNAADEQMRGIHEINSAVAQLDTMVQQNAALVQESTAASAALQAQAADLTDTVNQFKI........ 595
9 -56.700IDP01485 hemolysin secretion protein HylB VCA0220 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  19  1MIINKFSLKWMLAIAVAIPAIALLFVAFTSLNTMSVMQAQSNSLYANTAAPMRAMAEATSRIPRMRVGIDMMLLQETALKLKRVEEARTEDIPEMRQAMQVAVDSQVNPELKEQARKLQARFEQMVREELEPMQAFANNDMTTAQNIYRDKYAPTYGEMRKQANQILDTLLQQAEQQNHASVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVINKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL........ 548
10 -54.900IDP91343 methyl-accepting chemotaxis protein [Vibrio vulnificus CMCP6] VV2_0072 [Vibrio vulnificus CMCP6]  ali follow..  25  175.....................................................................................................................................................................................................LGIWSLLLLSVAISYSSTRRLESLSAEARKVFDNPLMELVYNKKVDDISEIKLALKMRQSELNAVVGRIQDSNQQLIDSARNSSSNSDKASHNLKGQTHETEQVAAAITEMHSTANEIAQNAQSASDATDQAHSAASEGMITVQDTVKAIKQLAQHGKTIGDVLIIIQGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAQRSHESTEEIQKVIGEGTHLAEQCVSSADSSGQKLQILLDQVTDISDRNNQIATAVEEMARVTEDMSSSVQSISDACSATNVLSSDTCHQCNALVKSLDSQGKLVSQFR......... 517
11 -53.100IDP04179 methyl-accepting chemotaxis protein [Vibrio cholerae O1 biovar eltor str. N16961] VCA0068 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  21  5..LSGLSIKLQVVVPVFFTLLLLIIGITFSTSSLKTAFHQVTVSTEQLITDKDNLTTLIDNTYAMRISAIYSLFRPA-----EVTALPNVLKEKQTENLALLRSLADNPELKNEVAGLTQAMQRYVDYSIQTMIQEKDERFTAQYEQATAEYRKVGNEMIKAIDVLSNRLNQVAMTTIDESEHEHDSVMSQSTFALIGILLVAALSSWLLAGIIVTPIRQLQQTVREIAKGNLLVKAQEEGNNEITLLARDVNATVTQLRQTVESLVRISTDVASASTELATVMTQASVNSDQEKQEVEQVASAVNQLQSTAQSVTDHAHSADGAAQQANQLASQSLRMFEESHRATAKMADQSERIGNVTEVIRSISEQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQTSTQEIQAIIESSLSLLEQNQSLAAKVSASLTEINHSISALGQINAQVATASEEQSQVTKDINRNLSNIYELVSQNVTGITQSAAASHELSDLAEQQHQQLQYFRV........ 547
12 -49.200IDP95280 methyl-accepting chemotaxis protein [Acinetobacter baumannii ATCC 17978] YP_001085820 [Acinetobacter baumannii ATCC 17978]  ali follow..  25  293.................................................................................................................................................................................................................EYDRNQNAILRLLDEIADLADGDLRSYATVS-EDFTGAIADSINFAIDQLRDLVSRIHETSQEVARYTQDTQSITNQLAEASEHQAQEIAGASTAMNEMAQSIDQVSANASESAEVAQRSVQIASNGAQVVNRSIEGMDTIGESSQEIGNIVSLINDIADQTNILALNAAIQASMAGEAGRGFAVVADEVQRLAERSASATKQIETLVEQTTTEVVRGANLAKDAGIALDEIQKVSGDLAKLIASISDAAKLQSASASHIATTMTVVQEITSQTTTATFDTARSVSELANMAESLRESVTDFKLPD...... 625
13 -40.400IDP95064 methyl-accepting chemotaxis protein, partial [Campylobacter jejuni] AGM39603 [Campylobacter jejuni]  ali follow..  20  2................................................................................................................................................................................................................................................GSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQAALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIANSINASLRNITESVDEITNVINLIKDVSDQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEKTQKATTEVEMNIEQVEKISIDSNAHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQLADHTSC............................ 282
14 -35.600IDP01046 putative methyl-accepting chemotaxis protein STM3138 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  1......................................................................................................................................................................................................................................................................MFKKVLGLRHWNNNVVKIPPPAAESGANASDVVVDTPEPYETIDIIRNAIIKSCEQLNIEKERINELNEQNDKARSSLKSLVEFITEINTSLTQINACIKEIQKIANQTNLIAINSAIEAARVGDAGRGFSVISKEVKNLSEDVKHSSKSVSTLTDNQQPVIDNITTNINQIVESIGIVIDKSLSMKSVMQYISTVQFLNIVKVDHVIWKMEVYKLLLNKDIN.................................... 263
15 -28.300IDP91610 gene: ECs4554; EspB protein [Escherichia coli O157:H7 str. Sakai] BAB37977 [Escherichia coli O157:H7 str. Sakai]  ali follow..  14  31......................................................................................................................................................................................................................................LSIDSSLLTDGKVDICKLMLEIQKLLGKMVTLLQDYQQKQLAQSYQIQQAVFESQNKAIEEKKAAAGILGSFAAMNNAAKGAGEIAEKASSASSKAAGAASEVANKASAMQKAMATTTKAASRASGVADDVAKASDFAEDLADAAEKTSRINKLLNSVDKLTNTTAFAVTSLAEGTKTLPTTISESVKSTHEVNEQRAKSLENFQGNLELYKQDVRRTQDDITTRLRDITSAVRDLLEVQNRMGQSGRLA......................................... 311
16 -22.500IDP92066 gene: GAPDH2; apicoplast glyceraldehyde-3-phosphate dehydrogenase 2 [Toxoplasma gondii] ABO93620 [Toxoplasma gondii]  ali follow..  10  11LRTRGLFFSSSLPLSHCLFLALFLFLSFDNFLPTSRS------------------------LNSFSVPAAALRLDGRDGPRPQTPETFSSSAFAEPSPESTPGACPLSSNDGELSLQQAEALLREEQTLATEYAQRAAGDVQQFTAAAQEAAARGDMSAAKELAAAAAASAAEAEDLAAYAQAVGETDPAVLRERA------------KEEAERFEQEERRQRGGDAASSGTCSESSDAAFAPEFSDLRDLFFGACDAT---------VSPDDLPSVPEALEKLAGLESDVQARGDQLDEKEKVVAEYLVAAQEAAVRHEEASRAFEDAKR--NKKENLAAAAEKAALEAAAEYADLTTAAQLVTEEAEQESAKA------LADAVAAGDLRFAINQKIVNEAGPEARGKVPRALLAPKHVRISDPAAGRVLKIFFHNNFAPFEDLPCAALHADAHLCRQHPRCVVQVEQSGDEVLQRCLLDEAYLALLTKTPDFCAAAPAEAETGLGNSAAQATGTPVSP 478
17 -13.100IDP04691 sensory box histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA5067 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  297..................................................................................................................................................................................QPVDEAVQMVQDYYIYIIAFVVVLIFLASFYYSKQIAKPLLKINDTTKKIAHLDFTEQIPITSKDEIGDLSKNINTLSNKLNSHIGQLEQDIEKE----RKLEKTRKEFISGVSHE---LKTPLSIMKSCISILKDGVAEHKKEYYFQAMERE-VDKMDTLILDMLE-LAKFESGTYKMKYIDTVMEAICEHLSVEIEKKELRVHKHIGP----FEVVANQGRIEQ--------IVNFITNAIRYTPNKEDIIENKGTHIEE--EQLDKIWDRFYRVDAARQRSQGGTG-LGLAISKNILELHDAEYGAENTEDGVLYLPKKA.................... 617
18 -13.000IDP04182 sensor histidine kinase [Vibrio cholerae O1 biovar eltor str. N16961] VCA0238 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  13.....TMFRYRLAFVLALLLTLILAQVGVAYWSNQVANQHLLRGQISS-QILQGFMQLSTEKQQLKVWLAEYLLIKDGSKIEALLHKLNLLTEQAQQHSLTVQDFSEINQQIKVISLFETNFASLKKALRSWEIAKITDDDERWLLLSQSFDRVDDTDLRQLLTQAISLQQQRTSRYEEAALDALSNVRSVITSLAVFGMVSGALLGVWLLRTLSKPLAELVKSTTALEQGRLDHRISISGPDELKTLARHFNYMAQSLEQAQQKERMSRQLI---EREVADRTQELAQALQT----LEKAKHQQKEFFANVSH--ELRSPATAILGEAQITLRSRHNSDDEYRQTLLRISESAEQLAFRIELLMLIRHDERLFHPAAVVRQASLLTHAQQVELCYTDCDKLLM--------IRILVDNALRYDPTQQPILVDQGIGIAE--ADLSVIFERYFRAENGKRYRPDGLG-IGLTLAQ--SIVKQLDGEIRIESVLEQG......................... 530
19 -12.900IDP04672 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA1482 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  268.............................................................................................................................................................................AIASLQPVNEAMLVLKDYYVYALIIVFLVIILLSFYYSKIIVKPLIKINRVTKKMANFDFSEKLPVTADDEIGGLSGSINTLSVNLKDRIDRLNVANTKLQQDIERERQLEKTRKEFISGVSHELKTPLSVIRSFAEGIKDGV--SKDTTYYTDVILEETENMNRLIVEMLE-LAKLESGTYKLDSIGELIQQVYTKLLFSMEEKHLQVNIDVNSS---IFVKANRSRIEQ--------VVNLLSNAIRYTPEGEKIIENTGNPIPE--ESLEKIWDRFYRLDASRSRHTGGTG-LGLSIVKNILDLHHAEYGVYNTTNSVV.......................... 591
20 -12.600IDP04664 sensor histidine kinase/response regulator [Bacillus anthracis str. `Ames Ancestor`] GBAA0996 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  6....KFSIRYKIMAGYLVIILFLLISFIMLNNQISNLQKSRNFIIDHDFKVLNLTNQVEKDLLTIENKAKGFITSNNANYLQSLNSAERDYEKHYHDLFSLLED---NPSQQEKLKEINGNITNWMNKEIHPLIANHNSNKIQEID------TTEIQSLQSQLTDFRSTEEQLTKKRAAQLDTKNNKLELWLYSLLFLLSCISIIVSLYISNSITKTIKNVIQAIKSISSKEITERIHVNTHDEIKDLAHTTNHLLDEISK-----REWLQTEIAELILMYQGVSSIEMLGNKILSGIIQKTQTSCGAFYVREEYEETASFADQGFDIGKQSIKMGEGFIGQSALILRDIPEEFRYVTTGLLLVIPVLFEDEVIALEEKASELLRSSKYKSLANMSHELRTLATVIHSSGKDLLTLINDDLSKVEAGKLDVIFEATNISDMAASMHQNVEDSDTIPDLFYTDAKRIEQISNAF----KFTEKGSVSLHFDSIETSNLSHDMQSISKDWITISVKDTG.... 667
21 -12.400IDP04331 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2181 [Clostridium perfringens ATCC 13124]  ali follow..  7  167..................................................................................................................................................................................QAIEEASALIKDFYKYIILIVIVIGLILSYVFSNLISKPLVKLNKSAKKMSAMDFSEKCDIEREDEIGNLAKTLNFLSKNLSNALDDLKIKNKKLEEDIEKERELEKLRKDFIAGASHELKTPIGIISGYAEGIKDGIVDHKDQGVYLDIIIDEAEKMNKLVMDMLE-LSKLEAGKIDLHSLTELTEEVLVKNSVDINKNNLTVVKNYSPTEDLYVQGDDFK--------IEQVLTNFVTNAIKYSEPNNQIIENTGAHIPD--SDINKIWTQFYRGDTSRNRGSRSTG-LGLSIVK.............................................. 470
22 -11.800IDP04438 gene: cpxA; two component sensor kinase [Yersinia pestis CO92] YPO0073 [Yersinia pestis CO92]  ali follow..  11  169....................................................................................................................................................................................................IATMLISAPLLLWLAWSLAKPARKLKNAADDVARGNLKQHPELSGPQEFLATGASFNQMISSLDRMVVAQQR----ISDISHELRTLATALMRRRHGEGKELERIEMEAQRLDSMIND----------------------------VLSRSQHKNELHREPIKADELWSDVLENAQFEAEQMGKTLVVTAPPGP--WPLFCNPAALDS--------LENIVRNALRYSHHHIAVVDDDGPGVSP--EDREQIFRPFYRTDEARDRASGGTG-LGLAIVE--TAVSQHRGWVKAEDSPLGGLR....................... 446
23 -11.800IDP04694 gene: yycG; sensory box histidine kinase YycG [Bacillus anthracis str. `Ames Ancestor`] GBAA5714 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  177..................................................................................................................................................................................EDVYKQMKDINQIFATGTVIALLVTAVLGILLAQTITRPISDMRRQAIEMAKGNYSRKVKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDG---IATDRKGDIILLNDPAEKMLNVSTALDQSVLEVLGIQEEFTLDHLYEEPDSVLLDFSTRSFSVIQKETGKANGLIAVLYDVT------------EQERIERERREFANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVIQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVL............. 503
24 -11.500IDP04543 sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] VC2453 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  183....................................................................................................................................................................................................VIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAM---------------------AVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARLANMSHELRTPLNGVIG-MLKTLQTIEKSANNLLTIINILDFSKLEAGKLALEVNLQATSAHEKGLEITLIDPKIRGVVGDPLRIQQVLTNLVGNSIKFTERG------------NIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLQAFSQADASISRRYGGTGLGLV--TQKLVSHMG............ 495
25 -11.500IDP04132 putative two-component system sensor kinase [Yersinia pestis CO92] YPO2997 [Yersinia pestis CO92]  ali follow..  13  157....................................................................................................................................................................................................WMGVLGGLFFSTLLAWNLTRPMRQLRVGFERVAQGDLSVRLLRRRHDELTEVARDFDSMAERLQALVSAREQLLHDVS----------HELRSPLARLQLAIGLAHQNPDNVDNALQRIEHESERLDKMIGELLALS--------RAENHSLADDDEYFDLQELVVVVNDARYEAQLPGVEIQLEVAAQSE-----YTVKGNAELMRR--------IENIVRNALRFSASGQQVKVTLSALDKRYQIQVNKLSSIFDPFVRVKSAMSGKGYGLGLAITH--KVILAHGGQVEARNGEQGGLV....................... 439
26 -11.400IDP04673 gene: resE; sensor histidine kinase ResE [Bacillus anthracis str. `Ames Ancestor`] GBAA1498 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  163..................................................................................................................................................................................QVPIQGMERTTDFIFLSAGIAIILTTFFAFFLSTRITAPLRKMREVAFEVSRGKFDAKAPMVSQDEIGELATALNQMGKQLKFNMNALQQEKEQLASILSSMADG---ITLNQEGEVVVINPPAEHFLQVWQEEKEIELSKKLPSELVELFHLVVESEQQQVVGINLQKGNYVVLMTPLYN--TKIRGA-----VAVLRDMTEERRLEKMRQDFANVSHELRTPMVMLQGYSEAILDDIVQTKEEINEFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQIAKDKEVALTVDFKDSIEQYPFDADRMEQVL............. 486
27 -11.300IDP04012 gene: virJ; sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2355 [Clostridium perfringens ATCC 13124]  ali follow..  11  163..................................................................................................................................................................................SKEYLELRDLMSNIKFIVSITFLLILIFTYFLFERIINPLNYIKNSFKRIGDGDFKINLKVNSKDEIGDLACGVNKMANKIEEQIEKINEEKEKVLTLE----------KTRTEFFNNITHELKTPLTNISGYAQIMSEEDFHDNDFRKFALERINKESKRMHELIVSLIEISKNKSENVNLKTLIEDLCEDFKVKGDKQGICISNNLED----IEFMCREDEIRR--------IINLLDNAIKYSIKGSEIIENLSDEISS--EGVEKIFEPFYRENTKKSRELGGNG-LGLYICS--ELVKKYGGDISFNYSNGKV......................... 475
28 -11.200IDP04484 gene: barA; two-component regulatory protein [Yersinia pestis CO92] YPO3381 [Yersinia pestis CO92]  ali follow..  15  184....................................................................................................................................................................................................LFCMCVAILFAYRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGHMLGELDILKNGINSMAMSLAAYHEEMQQNIDDLRETLEQMEIQNVELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKT--------SLTPTQTDYLQTIQRSANNLLCIINVLDFSKLEADKLILEIILLAHTAHEKGLELTLINNDVDQVLGDAMRLQQIVTNLLGNAIKFTEEG------------NIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLQAFRQADASTSRRHGGTGLGLV--TERLVKEMG............ 496
29 -11.100IDP95472 sensor histidine kinase [Listeria monocytogenes 10403S] YP_005962624 [Listeria monocytogenes 10403S]  ali follow..  11  156..................................................................................................................................................................................SGTEQVIGTINRYMFYTILLSITVALILSAILSKLQVNRINKLRAATKDVIQGNYNARLKENNFDEIGALAIDFNKMTQTLETSQEEIERQEKRIADVSHEMRTPLTTISGLTE----GLVNDIIPKSETDRCIALIDTEARRLTKLVNENLDYEKIRSNKIKLQKTRFN-----KEFLELIKEQLDYVASEKGNITVAIDKDMAIYADYDRLTQVFINIVKNSVQFTENGQITLTGTQDYKESVLT-----ITDTGIGMNT--EELEQIWERFYKADMSRTNTAFGESGIGLSIVK--QLIEYHDGSITVTSEPNKG......................... 461
30 -11.000IDP04343 two-component system sensor kinase [Yersinia pestis CO92] YPO2916 [Yersinia pestis CO92]  ali follow..  11  18......SLRQLVLMAFLLVLLPLLVLAYQAYQSLDHLSTQAADINRTTLADARRSEAMTSVALEMERSYRQYCVLDD----ATLATLYQHQRKQYTQMLVAHAPILPDARYYQTLQGLLNQLTDI----------------KCKNSGPDKEASILLEQFSRSNAEMVQATRDVIFSRGQQLQKDIAERGQFFGWQSLLLFLVSVLLVVLFTRMIIGPVKGIERMINRLGEGSLGNTALFKGPRELRSLAQRIIWLSERLAWL----SQRHEFLRHISHELKTPLASMREGTE-ADEVAGPLTQDQQEVVAILDHSSRH---------------------LQQLIEQLLDYNRKLAEHVDLAEMVGNVISAHSLPARAKMIRTETELDA----RICWAEPTLLMR--------LDNLYSNAVHYGEESGTIWICSRQVNDRVQIDVSEEIMIFEPFFQGSHQRKGAVKGSGLGLSIAQDCIRRMQGDLQLVTVDYAA......................... 469
31 -10.800IDP04495 sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar eltor str. N16961] VC0622 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  392..................................................................................................................................................................................KEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVSAGDLDAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNKELESNLLIIRKQNDELQLANKLKDEFLATTSHELRTPLHGM------------IGIAEALISGANGPISAAHKYQLDIIISSGQRLATLVDLLDYHKMRYGALDIRLVLELSHHLLGKKTLRIVSEQPVWVSADPQRLEQVLYNLIGNAIKYTSEGK--VVDTGQGIPA--EQLEHIFEPLIQAGHDASRYRQGAG-LGLSISR---IELMHGTLYVSSQPMVGT......................... 722
32 -10.800IDP04430 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA4921 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  179....................................................................................................................................................................................................LLAILLIGLLSYLVSRSVIKPIFVLKDATGKIKEGNLDFHIPVTSHDEIGQLNQGFEEMRKKLKESIEMQTQYEENISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLS--EGIEVNLQLHASPLYVTA----DCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVI-----VMDNGSGIES--DTLPYIFERFYRAEQSRNSSTGGSG-LGLAIAK--QIIEEHGGNIWAESELGEGTS....................... 471
33 -10.700IDP04247 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_1402 [Clostridium perfringens ATCC 13124]  ali follow..  9  161..................................................................................................................................................................................NPKIGFKIFVYIMISLYIFIFTMSLILYSKLTSKTFTKPLDKLMNGVRKLSLGDYSTRINIEKNNEFEELGEAFNNMASKIEEEKKLKEKSEKLVRNIAHDLKTPLSSIIGYSNIIKNNPDIEKESLHKYISVIENNGERANE-----------------MIMELFE-FYTLQSSEFILQDLSEFLRNLIYIYLLEEKDFDFDFEISEDD----LYLEFDNKRLER--------IGNLIINSVKYNKKGTKFVSDDGIGLSE--EIKKHIFNPFVREEKSRNSKKGGSG-LGLTISK--EIVEKHGGTIYLSDGPLKG......................... 468
34 -10.600IDP04007 sensor histidine kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC1319 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  144....................................................................................................................................................................................................VFMLGGFALYCMFLIWFLSRRLRELERVTHDFANGNLQARASTKSSKSVGKLNHSFNMMADKISHLILSNKALTNAI---AHDLRT-ESQLNAKQQQQVASIIEDTEEMETMVDELLYYAKLEHPESDIQSQYLEVN----QWLADFIDEQSHLDADPQLLTRALVNLNAEKYAGDRLLIEASTVDAKL-DNGPG--IEEQHWPHIFDA-----------TDSSRNKAQSGFGL----GLAI------VKQIMARHQGEVTLTKSPLGGA....................................................... 420
35 -10.500IDP04104 gene: rstB; two-component regulatory system, sensor kinase protein [Yersinia pestis CO92] YPO2309 [Yersinia pestis CO92]  ali follow..  13  134....................................................................................................................................................................................................ILIGLSLALPVFLWMRPHWKDLLKLENAAQRLGSGHLDERTHFDPTSSLSRLGVAFNQMADNINTLIVSKKLLIDGIATPLVRLRYRLAMSDNLTESEQQALHHDIGQLEALIDELLTYARLDRPQVSLNLEPIDLP----AWLTTKIMDIRSIHQERE------------------IELDIPHRGDFGAVDLRLMERVLDNLVNNALRYSHQRLRIGLWFDGDNACLQ-----VEDDGPGIPP--EERTRIFEPFVRLDPSRDRATGGCG-LGLAIVHSIALAYQGSISVNTSPLGGASFR....................... 409
36 -10.500IDP06113 histidine kinase sensor protein [Helicobacter pylori J99] NP_222872 [Helicobacter pylori J99]  ali follow..  10  134..................................................................................................................................................................................................LAITVGLLLILFLFLFVLQSLLPLRELRSQVKRFAQGDKSVSCKSKQKDEIGDLANEFDNCIQKINAMNESRVL----LRSIMHELRTPITKGKILSSKEELSCKRFSSIFDHLNMLI----EQFARIEQLASKNYGSNKEKFLMSDLIDKIEKMLLIDEDKKSPIHVSSSNYIIEADFELFNMIDNAIKYSDDKQVFLDFIGNNLVVSNKSKPLKEDFEKYLQSSNPSQAHGFGL----GMYI------IKNALEAMGLNLSYHYSNGRICFTIHDCVFNSFYDLEADNEELPPPRKFERGEGNEGNRKSQL.............. 440
37 -10.500IDP04352 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA0584 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  179..................................................................................................................................................................................SFLENMLLKLMKQFLIISVLTIILTTISVFIFSRVITEPLIKMKRATEKMSKLNKPIQLGIKRNDELGSLAKTIEDLSSELTY-MKKERG--EFLASVAHELLTPLTYMKGYAK----VAKRDSLTKEEREEYLQIIEDETDSVTDLVQDLFMLVQLEQHQFVIKKQKVL-----RPFLERMVEKTKTTLTNKQMLHVYCKDDLEVCIDERRMEQVMLNLLHN-AYQHSLENTTITIRVLAETNSFT----SVQDEGEGIPE--GDIPHIFDRFYRVDKSRTRATGGKG-IGLAVAK--EIVELHNGSILVTSKLDVG......................... 477
38 -10.400IDP04428 gene: phoR; sensory box histidine kinase PhoR [Bacillus anthracis str. `Ames Ancestor`] GBAA4832 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  152..................................................................................................................................................................................EPLKDVHQKTWGLLIIGFVIACLVVVFLGMKITGQYIRPIESVTKVAIELAKGNYKARAYESHSDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSG---ILIDSRGYINLVNRSYKETFHVTEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLGIFEVYGAPIIGTNHEWKGI-----VLVFHDITELKKLEQMRKDFANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIF............. 481
39 -10.400IDP04165 sensor histidine kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC1521 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  309..................................................................................................................................................................................WPFLKAYVTNILEVGIITLFLLVISGLFVYRGSRDLFRPIERIHRVVKMVQLGKNQGQIGLDDKHELAQLAKQFDNMLDQLQQRNEEIVQAAHELEAKVQSRTASLQEKTAQLEHHIALLNQTRNKLEKLAALGELTAGIAHEINNILGNTELIRFELGADASRVEEEIDAILLQIERIRNITRSLLQYS-EITWQHVNPIIDESGSKKRDIEFVLELKAHNSVEVNRHQLLQILVNLQMNAIHAMNGKGRIIEDQGCGIKP--ENLKRIFD-------TTKREGTGL---GLSVSQ--SLLSQSGGEIKVQSELGVG------------STFSI........ 660
40 -10.200IDP04347 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2345 [Clostridium perfringens ATCC 13124]  ali follow..  12  276..................................................................................................................................................................................SNATKVPLLFKVSAFLVSLFLFIIAECVLYIKFKNLSSRMDSLVLAMEKVEKGDIDVHIPLKDRDEITFIADNFNKMCEKLNDHIRKS---------------------------YLAELRQREAEIVALQNQINPH-------NTLESIRMKAICNGDKEVGKMLYSLAFLFRSQVKGNLIVSIDQEIKYCNKYL----ELFKFRYDEKFKFKIECEEDLYDKGIVKFTLQPLIENYFVHGIRLERDDNELKIYIYKHLEDIVVEVEKLDDINRRIRECDHSGKSGMLNVHERI................................................ 546
41 -10.200IDP01736 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA5503 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  154..................................................................................................................................................................................TGEKEVLTNVGWTFLMTSLCLVAAGIFFAIRLAKSLHKPIDQLRQMAHRLANGDYKSKIELNEYVEIAQLSASFNAMADGIELHIKQLKEEKEKLDRITHELKTGYVDLLKAKEDVKESLRYVAVESERLLSLVEELLKSSKGTSTFEISPTVVNIK--ELAEEAVSIVKPVVADFDKTKQIF---------LNVL--DNAIKYSDATQHDDGIGIDEGVLAEWNES-----------PEGKILPSSYGHGY----GLYICQEIMDKQG-----GSMRIESSEEIGTTIFITFLLPRRMEDIKNLKAV................................... 475
42 -10.100IDP04158 sensor histidine kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC1088 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  141..................................................................................................................................................................................SYLEQQLAHARKWTLLIVLGEMGLVALFSYLLGNALTRRLTELKTATDQITFGNREVLLEIQGHDEISRVAHSFQQMVQSL-------RHSEATMRDYQHQLEQWNLELEDKVNQRTETLLAKNQQLEEMNTKLTLMKDKLVETEKMIS-AAGFAHEINNPNGALKSHLQLLQQDFNQLKVGFEQID------ILLSGSDFHGKFTQTKNALYLEESFSGIEESLRDALHCVDRIKTIV-DKVQRCQAEPALHDSSWVSPLSLVEQAIQICGLREWVVWK--EQTLYPPLIYCYSNDFVTALSANAAYASDDPMIRIELSLRHDHQQLEIEV........... 464
43 -10.000IDP04667 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA1313 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  152..................................................................................................................................................................................KSIKDLIYDMGLILAPLALAITLLTIWIGRKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETEDVKRK---EFLANVSHELRTPLSYIKGYSE----AILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIV-----SQLIEDVLDTYEIKFIEKKIISTNLNPEIIVMIDEDRMQQVLHNVLDN-AIRYTNQNGDIMITLRQIDDYCE-----IKDTGIGIDT--EHLENLGERFYRVDKARSRQHGGTG-LGLAIVR--QIVHIHDGQWQIESEKGNG......................... 450
44 -9.980IDP04189 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0225 [Clostridium perfringens ATCC 13124]  ali follow..  10  166..................................................................................................................................................................................TEAYEILRNTLTIFIISGLIAIVIAIFLINTFAKELVSPLMILKQKSKNISEGKFKEELHITSGDEVEDLANTFNIMSENLDKYINEIKSAKLHFDNVSHEFKTGFSEIIPKKEKIVQSSALIEKEGKRLLNLVEEILLLAKNKNTFEIEYTYIDVK--SLIEDCLKILK-IYGDHDKTKQVF---------INII--DNAIKYSGCE--------------TLSISTKRSPNKMEVIIEDDGTGFIIKDEYVNPKGNGLG--IKICKDIMQS-YGFNIESELDVGTKVTLSFSIGKNNEIKEEDF..................................... 474
45 -9.680IDP02181 two-component sensor/regulator [Yersinia pestis CO92] YPO0256 [Yersinia pestis CO92]  ali follow..  12  288....................................................................................................................................................................................AWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNL---------------------LDTLNEQYDTLEMKVKERTLALAEA-----------KRAAEQANRRKSLTTISHEIRTPLNGALGAV-RLAETAHQCSLSLLAIINLLDFSRIESGQMTLSMLTIHSQALSKSLALSTISANIPLELELDTLRLRQI-NLLGNAVKFTPQGR--VEDTGCGIDV-----QHQQTIFQPFMQTSDH-GTGLGAIADNLAKM-----MGGHLTVFSEPGQGS......................... 606
46 -9.660IDP92003 sensor histidine kinase [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002775 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  44....................................................................................................................................................................................................IVASLVGAGISLFLLLPVFTSLGKLKEHAKRVAAKDFPSNLEVQGPVEFQQLGQTFNEMSHDLQVSFDSLEESEREIAQLSHDIKTPITSIQATVE----GILDGIIKESEQAHYLATIGRQTERLNKLVEELNFLT------LNTARNQVETTSKDSIFLDKLLECMSEFQFLIEQERRDVHLQVIPE-------ARIEGDYAKLSR--------LVNLVDNAFKYSAPGTKLEVVAKLEKDQLSISVEDLENIFKRLYRVETSRNMKTGGHGLGLAIARELAHQLGGEITVSSQYGLG......................... 334
47 -9.650IDP04662 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA0650 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  148..................................................................................................................................................................................ESIEKLVNGLTKQFIIAGAITFLLTVITIFLLSRLLTKPLLHMKHATEKMSKGDLSVSLTTTRNDEIGELSSSIQTLANDLHYM----TERSEFLASVAHELRTPLTYVRGYAD----IALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVH-----HTFLTRISEKVNAMYKERYIVSFSCPPTLLVNLDEQRFEQVVVNILNN-AYRHSKEHSQIHISVIEENKRIS----TMEDEGEGIPP--EDLPHIFERFYRVDKARSRATGGTG-LGLSIVK--EIVELHGGNITVTSEVDHG......................... 446
48 -9.620IDP04542 putative two-component system sensor protein [Yersinia pestis CO92] YPO2000 [Yersinia pestis CO92]  ali follow..  12  153..................................................................................................................................................................................TPYMGTLNEFTRTLIVITAIGVLFVALLGFVIARIGMRPVNKLSEQAQHLAPGNHGQRLDTLTPDELQKLAVAFNGVLERQEIAWRQLES----NADVAHELRTPLTNLMGQTQLGLSR----KRETHELEDLLESNLEELERMTSIVNDMLFLSHAQAGEH-----------ATQLTDVSLREETYKTTEYVEPSFAEKNLSIHVEGD-----ITARIDRRLFHR--------LANLLENSARHAVTGTTVVANIGAPIAA--EHLNRLFERFYRVDSSRARSDTHHG-LGLSIVR--AVAIMHRGDVFASSQNGIN......................... 450
49 -9.570IDP04515 putative sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2673 [Clostridium perfringens ATCC 13124]  ali follow..  14  280....................................................................................................................................................................................................WIIPIVLVIHFIVKFIRKYDGLDTVIKGIEKVKKGDTDIEIKDNDDRQIRELADDVNDLRLGYKELVEE-KLKTELISNVSHDLKTNYVNILQLNNIKEEERKEYIEILDKKSQTLKKLIDDLFEVSKMSSGKVELFKYNIDIIQLVYQCIAEVEDVYSE--------KEIEFKING-------------------CMVKIDPQRM-------SRVFQNLTTNALKYSLEKTRVYVEIKDLENYVEISFKNISSARGDESRNSTIEGSGLGAIAKTIVEL............................................. 553
50 -9.550IDP04272 lantibiotic biosynthesis sensor histidine kinase, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA3899 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  17  158....................................................................................................................................................................................................LLFVAEVIFLSRSFGKSLSKEMMILRKVTDKIQKEDLDFQVEQSKIKEVNEVLTSLVKMKDELNHSLRTQTNRREQIAALAHDIKTGNAELDSNQKKCNEHILKSIDEMEIYMKSLFMQTDLRDFIHNIIEESAICVLGKQNLIENVQDIPNFIPIDETALKRAI---------MNIMM-NAIEYSPTKGDSGRGFTATEQFYRGDKSRNAKDHHGMGLYIAKSFAKQHGGNLYLSNSGAKVVLEISA............................................................................. 453
51 -9.540IDP01908 gene: ssrA; sensor kinase [Salmonella typhimurium LT2] STM1392 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  287.....................................................................................................................................................................................NRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTL--------------------------------QVQYDNLENKVAERTQALNEAKKRAERANKRKSLTVISHELRTPMNGVLGAI-GLADTARNCTLSLLAIINLLDFSRIESGHFTLHMQTIQGPAQSKKLSLRTVGQHVPLYFHTDSIRLRQI-NLLGNAVKFTETGG--VSDSGKGIEI--QQQSQIFTAFYQADTNSQGTGIGLT-IASSLAKM-----MGGNLTLKSVPGVGT......................... 604
52 -9.460IDP04659 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA0272 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  8  201....................................................................................................................................................................................................LIGVLVFIFSFFYITKRKMKQIEAMAEGVKEIEKGNLAYRIEKKGEDEIASLTENINNMAEELMNNIEK-KQKNELITNVSHDLRTPLTSIMGYLRLLRDSKYENKEQHDEYTRIAFAKSEQLKN-----------------LIEDLFE-YTKLTNEQVVLVCVNELLEQLIEELVPQAEEHGLTFVKKFPEER--AYAAIDSEKMVR--------FDNLLMNAIKYSKDDGEIKVSLQRQRWEIQIVIAELASLFERFYKKDQSRSRVTEGSGLGLAIAKSIVELQGGSIRAEY.............................. 485
53 -9.380IDP04191 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0554 [Clostridium perfringens ATCC 13124]  ali follow..  13  291..................................................................................................................................................................................DFINADIQSLRKEMTIIGLLFTLVVLIFSYFLYSSIKVPLYNLLNKMKRVSEGDLKVLVNDTYEDEIGVISDNFDSMLKRVNELIEKTKL---------QEVEKRDLEIRMQAQINPHFLFNTLNSLKWT-ALMNQDYTVSEGLSSLAELLRNTIIDKNELVT--------IREELENIKNYVVI-NSFDVQYEVFILQPIVENS---------------IHGIDENKENQKIIIKIMSEEENILIS-----IKDNGKGFNS------------KEKVKDNKLSGIGWNNVDERI................................................ 553
54 -9.130IDP04241 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_1112 [Clostridium perfringens ATCC 13124]  ali follow..  12  274..................................................................................................................................................................................KKITEELIPIIGSTLLIVIFCLIVVVILINILSKALSRRILLLKDKAEDVSKGNFNNPIFTEDTDEIGIVTNSFGHMTRDLNDMINKVYK---------IELEKKATELKAQAMINPHFLYNSLSTIKWK-AIREGNDDISDITGYLAKFYRTSLNNGQDITD--------VKSEIDNIKSYIEI-YSFDVEYRIFILQPIVENA---------------KHGIDCNQGKERGKIIVEFQEDEDSL-----KIYNSSNNNDI-----NSIEEMLNK-----PGKGYGIYNVKERI................................................ 540
55 -9.120IDP04302 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2503 [Clostridium perfringens ATCC 13124]  ali follow..  13  156..................................................................................................................................................................................RNVDNFILNFFLVFLVIGLTVLAIGIILSYFLANSIVNPITELIKVSEQMAKGNLKVRNKIVTNDEIEKLADSLNIMAEEIENR----ILKNEFISSVSHE------------------LRTPLTSIKGWAITLNNDFTDRETLKMGFDIIEKEADRLSNMVEELLD-FSKFVSGKIKLINLKEFIEYLRLYMNPRAEREHKELI---KGITEDFIIVGDKDRLKQ--------FINIIDNAFKFTHENEKIIIDTGCGISK--EELPRVKEKFYKGKNSKSQNGIGLSICDEIIA............................................... 436
56 -9.110IDP95462 sensor histidine kinase [Staphylococcus aureus subsp. aureus USA300_FPR3757] YP_494944 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali follow..  12  153..................................................................................................................................................................................PDIGETFSEFRTFLAVLLMLLLFISISLVIASTYSIIRPVKKLKLATERLIDGDFETPIKQTRKDEIGTLQYHFNKMRESLQNVSHEIKTPLTHIHHLLSELQQTSDK--TLRQQYINDIYTITTQLSGLTTELLLLSELDNHQHLLFDDKIQVN----QLIKDIIRHEQNFLGNQRLLHQAL---------SNLLI-NAIKYTDVGGASNDGSPISPQAEARLFER--------------KVSKHDNSNGL----GLAI------TKSIIELHHGTIQFTQSNEYV........................................................ 445
57 -9.030IDP02394 gene: phoQ; sensor protein PhoQ [Yersinia pestis CO92] YPO1633 [Yersinia pestis CO92]  ali follow..  9  174.............................................................................................................................................................................VVDTIPQELQRTDLVWNWFSYVLLANLLLVIPLLWLAAYWSLRPIKALASQISQLEKGERE-QLDENPPRELQSLVRNLNILLMNERQRYTKYRTTLADLTHSKTPLAVLQTTLRSLRTGKQTTIEEVEPIMLEQISRISQQIGYYLHRASMRSEHNVLGRE-PALLDSLYSALNKVYQRKNDFMEVMG---------NVL--NACVTTLHSEDDGPG--IPENKRQLIFQRTLRPGQGLGLSIAAEIIEQYQGKISITESGARMM.................................................................................. 472
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.