Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: IDP02077 putative type III secretion apparatus protein [Yersinia pestis CO92] YPO0271 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst MNNHMSSYHENAIIVHLATELLWLVLLLSLPVVVVASTVGLVISLVQALTQIQDQTLQFLIKLLAVSATLLMTYHWMGATLLNYTQQSFLQITSMRPLast
1 -72.700IDP02077 putative type III secretion apparatus protein [Yersinia pestis CO92] YPO0271 [Yersinia pestis CO92]  ali  100  1MNNHMSSYHENAIIVHLATELLWLVLLLSLPVVVVASTVGLVISLVQALTQIQDQTLQFLIKLLAVSATLLMTYHWMGATLLNYTQQSFLQITSMRP 97
2 -53.900IDP05500 gene: fliQ; flagellar export protein [Clostridium difficile 630] CD0261 [Peptoclostridium difficile 630]  ali follow..  33  2.........SEFMIMSVLKNGMFTGAMIAAPVLIVSLVVGLLISVFQATTQIQEQTLTFVPKLIAILLVVAIGGSWMLHTLISFTSEIFNMISLI.. 87
3 -53.900IDP04100 gene: yscS; needle complex export protein [Yersinia pestis CO92] YPCD1.45 [Yersinia pestis CO92]  ali follow..  48  2.........SQGDIIHFTSQALWLVLVLSMPPVLVAAVVGTLVSLVQALTQIQEQTLGFVIKLIAVVVTLFATASWLGNELHSFAEMTMMKIQGIR. 88
4 -53.800IDP91500 translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] VP1673 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  47  2.........NPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVIITLFITTQWLGAELHAFASLALDKIPQIR. 88
5 -52.900IDP01955 gene: fliQ; flagellar biosynthesis protein FliQ [Salmonella typhimurium LT2] STM1980 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  32  2.........TPESVMMMGTEAMKVALALAAPLLLVALITGLIISILQAATQINEMTLSFIPKIVAVFIAIIVAGPWMLNLLLDYVRTLFSNLPYI.. 87
6 -12.600IDP91478 putative type III secretion apparatus protein [Vibrio parahaemolyticus RIMD 2210633] VPA1335 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  18  1....MTVIDVTAASLSILTDAIIIF--------VGFVITGVLVGLLQTVFSIQDPGLPMAAKLVVFMVLLTQFGSGIYEQFHLLFKEL......... 77
7 -12.300IDP04702 putative type III secretion apparatus protein [Yersinia pestis CO92] YPO0272 [Yersinia pestis CO92]  ali follow..  18  171.............LQTEWQMMFELCLCFALPALLVMVLADLSLGLIRSARQLNVFFLAMPIKSALALFLLLISLPYGLHHYLSRMSDTEQKIGTL.. 253
8 -12.100IDP91501 translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] VP1674 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  18  174.............FYDQFQQLMWLGVLMSAPLVLAMFLAEFGLALIRFAPQLNVFFLAMPIKSAIASVLLIVYLGLMMDHFEALFYGITRFGDQL.. 256
9 -12.000IDP04698 gene: yscT; needle complex export protein [Yersinia pestis CO92] YPCD1.46 [Yersinia pestis CO92]  ali follow..  13  173.............FYNQFSQILLIAAVLAAPLLIAMFLAEFGLALIRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSHASKAMLLVMDPISLL.. 255
10 -7.020IDP06515 protein of hypothetical function DUF552 [Enterococcus faecium DO] AFK58423 [Enterococcus faecium DO]  ali follow..  14  116...EPRAYSEAMAIAKRIIAGEATLVNFHL---IVDFLTGTVYALDGDIKRVGDEIFLCTPTGMEI............................... 183
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.