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Query: IDP02179 gene: proC; pyrroline-5-carboxylate reductase [Coxiella burnetii RSA 493] CBU_2090 [Coxiella burnetii RSA 493], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQFVTSPGGTTEQAIKVLESGNLRELFIKALTAAVNRAKELSKTVDQLast
1 -103.000IDP02179 gene: proC; pyrroline-5-carboxylate reductase [Coxiella burnetii RSA 493] CBU_2090 [Coxiella burnetii RSA 493]  ali  100  1MNTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQFVTSPGGTTEQAIKVLESGNLRELFIKALTAAVNRAKELSKTVDQ 274
2 -99.400IDP02492 gene: proC; pyrroline-5-carboxylate reductase [Francisella tularensis subsp. tularensis SCHU S4] FTT1559c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  37  1...MKICFIGGGNMAAAMIAGMTSHGYKSQDIIVFDRNEHKCLNLIKKYNINTSTSLLNTIKLADVLILAIKPQNMFELIKNIRDTVTSTQ-VIVTVAAGIQTSAYEELFNKEISFARTIPNTPSSLGYGATGIFFNKVIAADKKDLVIDIMQTMGVVTVVEDEKEIDIVAAIASSGPAYYFQFMEHMVEAAIKQGLDKKQAEKLVVQTCLGAAQMALNTNENMSELRKNVTSKKGITYEALNIFEQFNLGGIVDKAIQANIARAQQLAIEFTK 270
3 -86.400IDP00140 pyrroline-5-carboxylate reductase, putative BA_0197 [Bacillus anthracis str. Ames]  ali follow..  30  2LTKHRILFIGAGRMAEAIFSGLLKTSEYIEEIIVSNRNVEKLDQLRARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLL--SNQLVVTVAAGISPSYLEERLPGGTPVAWIMPNTAAEIGKSISLYTMGQFVNETHQETLQLLLRGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEATAKHLVIQMISGSASML-EQTQDPANLREQVTTPGGSTAEGLKAL............................. 244
4 -27.500IDP90565 ketol-acid reductoisomerase [Vibrio cholerae O1 biovar eltor str. N16961] VC0162 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  35LKGKKVVIVGCGAQGLNQGLNMRDSGLDVS-LRQAAIDEQRQSFKNAKNNGFNVGSYEQLIPTADLVINLTPDKQHTSVVNAVMPLMKQGAALGYS--HGFNIVEEGMQIRKDITVVMVAPKCPGTEGFGVPAVHPENDPQGEGWEIAKAWAAATGGHSSFVAEVKSD-LMGEQTILCGMLQAGSIVCYEKMVADGIDPGYAGKLLQFGWETITEALKFGGITHMMDRLSNPAKIKAFELSEELKDRPLYNKHMDDIISGHFSST......... 315
5 -16.600IDP90757 gene: ilvC; ketol-acid reductoisomerase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0632 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  15  16IKSKKVAIIGFGSQGHAHAMNLRDNGV---NVTIGLREGSVSAVKAKNAGFEVV-SVSEASKIADVIMILAPDEIQADIFNVIKPNLSEGKAIAFAHGFNIHYGQIVV--PKGVDVIMIAPKAPGH-GGGTPCLIA-QDESKNAKNLALSYASAIGGGTTFKAETETDLFGEQA----GGLSALIQAGFETLVEAGYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEE-MKGVLKDIQNGVFAKD......... 291
6 -13.900IDP06064 3-hydroxyacid dehydrogenase [Helicobacter pylori J99] NP_223303 [Helicobacter pylori J99]  ali follow..  21  1...MKIGWIGLGAMGTPMATRLRDAGL---EVSVYNRTESKAAPLKEK-GVAVYTSPIDLAAKVDLVFTMLDKAAIDAVLAPKFWEQMSKKIVVMSTIAPLESLSLEKIAQKHQATYLEAPVSGSVGAAKAGALLILAAGDEEVISKLKPVLAHLGSQTFYLGKVGQGTGAKLSIN--SLLAQMGVAYSEAAKRLGVDAESFLQIIGQSGMNSPLF.......................................................... 212
7 -13.700IDP02330 gene: ilvC-1; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1419 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  15LKEKKVAIIGYGSQGHAHAQNLRDNGF---DVVVGLRKGKSWDKAKED-GFSVY-TVAEAAKQADVVMILLPDELQPEVYEEIAPNLQAGN--SLVFAHGFNVHFDQVKPPVNVDVFLVAPKGPGSEGGAVPALFA-QDATGVATEKALSYADGIGATR---KEETETDLFGEQAVLCGGVTALVKAGFETLVDAGYQPELAYFECLHELKLIVDLMYEGGLENMRYSVSDTAQWGDFVSG-PRVVTEDTKKAMGTVLAEIQDGT......... 285
8 -12.700IDP05722 gene: tyrA; prephenate dehydrogenase [Bacillus anthracis str. Ames] BA_2954 [Bacillus anthracis str. Ames]  ali follow..  13  15...KKVVLIGTGLIGGSLALAIKKDHDV--TITGYDIFQEQVERAKELHVVEIAVDLQHACEEAHLIVFASPVEETKKLLHKLASFHLREDVIVTDVGSGSIMNEAEALFSKEISFIGGHPAKAHLFENAFYILTPMHHVPNEHVEELKDWLKGTGSHFLVLNTEEHDYVTGIVSHFP---HLIAAGLVKQVEKHAGDNPLIHQLAAG---GFKDITRIASSSPKMWSDIVKQNREHLMVLLKEWISEDLYDTVSGEIQNYFADAKEYRDSLPV 297
9 -12.300IDP01976 gene: gpsA; glycerol-3-phosphate dehydrogenase (NAD+) [Coxiella burnetii RSA 493] CBU_1518 [Coxiella burnetii RSA 493]  ali follow..  11  5..KHPIAILGAGSWGTALALVLARKGQKVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAK-TRIAWGTKGLAKGSVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGIGVELCGSVKNILAIATGISNARAALITRGLTEMGRLVSVFGGKQETLTGLA-----GLGDLVLTCTDNQSRNRRQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRILHEDLDPQQAVQE 323
10 -12.200IDP02524 gene: ilvC-2; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1852 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  14LQGKTVAVIGYGSQGHAQAQNLRDSGV---EVVVGVRPGKSFEVAKAD-GFEVM-SVSEAVRTAQVVQMLLPDEQQAHVYAEVEENLREGQ--MLLFSHGFNIHFGQINPPSYVDVAMVAPKSPGQEGNGVPAVAVHQDATGTALHVALAYAKGVGCTTTFQEETETDLFGEQA----GGVTALVKAGFETLTEGGYRPEIAYFECLHELKLIVDLMYEGGLTNMRHSISDTAEFGDYVTGLTEIQQGEFAKKWILENQAGRPTYNAMKKAEQN 309
11 -11.900IDP01730 gene: gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [Francisella tularensis subsp. tularensis SCHU S4] FTT0871 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  13  2..QKNILVLGAGAWGTALALQLAYRG---HNVRINSWKAEHNEQMLKD-RLKAIQDWQANIIEFDSILVATPSSGFKNTILELKECILPQ-QNIISATKGFCHDSAEDILPTTKFALLTGPSFAKELANQLPTAVVVASKDINYARYVQELFSNIGAQVGGAVKNVLAITAGIANAHAALITRGLAEIKKLGLKLGANSETFIGLSFGLYLGQGMTIQQALKEVNNVVEGYF----TAKAVYNLAKKHNVEMPLVFATYRILYEAADPRDIVKE 322
12 -11.500IDP04504 2-dehydropantoate 2-reductase [Vibrio cholerae O1 biovar eltor str. N16961] VC2307 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  1...MNIVVLGPGAVGSLWALHLHSAG---HQVALWSRQAQPTITLQLD--ISFRNQNLDTLIHADLLLITVKAWQVEAALQPLLPHLNRE-TILLFMHNGMAVEAISESLTHFPVLFATTLNQVSHTGFGQTQVGPFNALGARCDFIADVFNHALAPVTWNPENCAINPLTAIHQCANGALV-ILDEVTAVMQAEAISGEAEALRDG-----VYQVIQATAANLSSMHQDVFHRRPTEIDFIRKGEQHGIATPVNSALYQQIKTLEQSWSK... 295
13 -11.400IDP05340 putative oxidoreductase [Clostridium difficile 630] CD3450 [Peptoclostridium difficile 630]  ali follow..  8  1MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEIIKI-------------LLNLGVHVKPLASTVSQGEELIELSTKKNLNLMVG----------NRRFCPMYKEIKNNATEIVSINICKHIDTALWLANEDVEIS-SHKLKGKNFSINTSMHRDSGTKLEQVEILSKGKIQRVKNLNVLEIEEGGNLTLKQSGAWVNILKQKGFEDISNHFIDCIENNIKPA...... 284
14 -11.200IDP02668 gene: gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1526 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  2...TKITVVGAGSWGTALAMVLADNGHDMDEINTKHENSRYLPGITLPSTIVAYSSLEEALVDVNVVLIVVPTKAYREVLQDMKKYVAGP-TTWIHASKGIEPGTIEEEIPEDLIVVLSGPSHAEEVGLRQATTVTSAAKRMEAAEEVQDLFMNVGVELGGALKNIIALAAGITNAKAALMTRGLTEIARLGRKMGGNPLTFAGLTAGNMLGKGHSLEEVLESMGMVVEGVR----TTKAAHELAEKMEVEMPITAALYDVLFNGNNVKDAVGS 323
15 -10.900IDP00126 gene: mviM; putative virulence protein NT01ST1449 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  1MRTLRIGIVGLGGIAQKAWLPVLTNTAGWTLQGAWSPSRDKALRICESWRIPYVDSLANLASSCDAVFVHSSTASHYAVVSELLNAVCVDKPLAENLRDAERLVALAAQKKLTLMV-RFAPELKTRLGTAASLRMDKHRTDSVGPHDLRFTLLDDYL-------HVVDTALWLAGG---------EARLASGTLLTSESGEMCYAEHHFSADKLQITTSMHRRAGSQRESVQAVTDGGLYDVTDMRE........................... 240
16 -10.700IDP92082 glycerol-3-phosphate dehydrogenase, putative [Toxoplasma gondii ME49] TGME49_107570 [Toxoplasma gondii ME49]  ali follow..  13  21.GPLRVAVIGSGNWGSVIGKICAQNAERSDIINQKHENVKYLPGHKLPDNLVAVPDVVEACRGADLLVFVMPHQFVAKVCDQLAKAVVPSHARAISLLKGLYVEGIRSKLNIVECAALSGANVANDVAREAEATIGHSPDETDTALIWQQLFDKPYFKVNTLPD-----VAGVQLCGAVKNVVALAAGFCDGLGLGTNTKSA------IRLGVEEMK------------QFGMIFFDNVIAETFFDSAGYADVITTVF-GGRNARCAAEFVRQK 304
17 -10.700IDP92023 glycerol-3-phosphate dehydrogenase, putative [Toxoplasma gondii ME49] TGME49_010260 [Toxoplasma gondii ME49]  ali follow..  13  15.GPLKVSVVGSGNWGSVIAKIVALNAQKTDIINKTHENRKYLPGHKLPENLVALPDVVEACRDSDLLIFIMPHQFATKVCEQLAEAVVPGHARAITLLKGLHVENFKTKLDIVDCCVLSGANVANDVAREAEATIGYSPEETDAALIWQQLFDTPYFKVNALPD-----VAGVQVCGAVKNVIAIAAGFCDGLGLGTNAKTA------IRLGVEEMK------------QFAMIFFDNIMAETFFDSAGYADVITTVFGGRNARCAAEFLRRGG 299
18 -9.720IDP91227 gene: tyrA; T-protein [Escherichia coli CFT073] NT04EC3201 [Escherichia coli CFT073]  ali follow..  14  100...PVVIVGGGGQMGRLFEKMLTLSGYQVR------------------LEQHDWDRAADIVSDAGMVIVSVPIHVTEQVIGKLPPL--PKDCILVDLASVKNGPLQAMLAAHDGPVLGLHP--PDSGSLAKQVVVWCDGRKPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALR---HFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKGEAIELLEQGDKQAFIDSFRKVEHW.. 349
19 -9.650IDP06299 6-phosphogluconate dehydrogenase [Streptococcus pneumoniae TIGR4] NP_344902 [Streptococcus pneumoniae TIGR4]  ali follow..  13  1MTKANFGVVGMAVMGRNLALNIESRGY---TVAIYNRSKEKTEDVIAEKNFVPSYDVESFVNSIEKPRRIM--PGTDATIQALLPHLDKGDILI-NTFYKDTIRRNEELANSGINFI------GTGVSGGEKGALEGPSIQKEAYELVADVLEEISAKA---PEDGKPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAESYD........................................................................ 203
20 -9.460IDP02226 gene: yqjI; 6-phosphogluconate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA0164 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  1MENLQIGVVGVGVMGKSLALNFESKGY---SVALYDISKEKVDETIEE-NLVGTHIVEEFVNSLESPRKIL--EITDKAIDSLVPHLDKGDILI-NTYFVDTIRRNKRLAEEGINFI------GAGVSGGEEGALKGPSIQKDAYEKVKDMLENISAKVNNEP-----CCSYIGPNGAGHYVKMVHNGIEYGDMQLICE........................................................................... 198
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;