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Query: IDP02214 hypothetical protein Cj0041 [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0041 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMSNLAPQNDVLNLTPSKTSTTSSSFSKTSKNKEHESSDSKNSTQDDTESFLNSLLNSINETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESASFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLGLNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTTHTTSTHSMQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNTLKNIKNDEFAKNLTEELNIKDKKNQDNLNKESKDLNKDFNKELNKNQEKNNLNQENIQDQNKNLKNNDQNLNLDKNLNKEIVKDTQKLVSNLTQKDFNLNKEPKNNNKENKDIKQNFFDQKLNFENLNKTQVVQNKENNANFNNNNTNNKETFTQEQTKTHSENVDKNSLDELNSLVKDLNKVTQNNARNITPKETLQYFSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVTLIQRGNNLHINFNSNANAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQGKNRSGYGFKDALDGKNESEKVNLELVLAKYFLast
1 -94.700IDP02214 hypothetical protein Cj0041 [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0041 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali  100  1MMSNLAPQNDVLNLTPSKTSTTSSSFSKTSKNKEHESSDSKNSTQDDTESFLNSLLNSINETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESASFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLGLNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTTHTTSTHSMQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNTLKNIKNDEFAKNLTEELNIKDKKNQDNLNKESKDLNKDFNKELNKNQEKNNLNQENIQDQNKNLKNNDQNLNLDKNLNKEIVKDTQKLVSNLTQKDFNLNKEPKNNNKENKDIKQNFFDQKLNFENLNKTQVVQNKENNANFNNNNTNNKETFTQEQTKTHSENVDKNSLDELNSLVKDLNKVTQNNARNITPKETLQYFSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVTLIQRGNNLHINFNSNANAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQGKNRSGYGFKDALDGKNESEKVNLELVLAKYF 598
2 -24.200IDP05055 gene: fliK; putative flagellar hook-length control protein [Clostridium difficile 630] CD0253 [Peptoclostridium difficile 630]  ali follow..  14  258.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SNVMDDSIKAIK--TNDIQELTIKLRPKELGDMNIQLLKDGESMRAVVVFNKDVFDSINKNIADLKQHLELTNVKDVSVQMHSDNTNTSDTFDKAFEQQNRQNNQENMSKKNT-DRVDLLA.... 401
3 -18.100IDP93904 gene: yscP; putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001004080 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  16  347.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SEQLIQLAQRLAVELELRGGSSQVTQLHLNLPELGAIMVRIAEIPGKLHVELIASRETLRILAQGSYDLLERLQRIEPTQLDFQASGDSEQESRQKRHVYEEWEAEE...................... 453
4 -16.000IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  5 1384..KNLMSDVEHAINTHLGLSPGRVRAFQARYAEKRIPMDDATEADAVSSVALMEKLRDILPSMAHEEGRFQEVTGGGATLQWDGPGTNILDRIAQEQATAGEGEQQTSEGIPTRDMQVDGTAVLEEAGEKSDKKKKKKEKKEKKEKKEKKEKKEKKEKKKKKGGETAAEPEEASAVLAPPPVPVPAAAIPSVLLPADSEDGEKEQPKEKKKEKKEKKKKKDGETDAEPEEASAVLAPPPVPVPAAAIPSILLPTDGEDGEKEKTKEKKTEKKKEKHTEKKHKKKSEALPESETTAVVTVTPGEEDETSPLVPVPSSIASSEAPEPPASTRVTPAPEPKAKPGLSMGAALLAVRARSRLQRKHLAQQLSSSSSSEVSASSASSLSPSSSSSSDFAETRAKADALRARLQAAQARLAAARETEVSSSETESSETSEASFLSSDGEWDALWQSQRAAAMERQQRLQKMVSGVKAAYRRLEEENTRLAATRRRDKLQRQVEAERERAVELLKEATRRAKEEKDLIARQPPPARDWSDTVVL-NSQAACAPFADSGRDEGGRDEWYEVSDACSRRAESSNESRTTAGAKLRQQQLDLA..... 1987
5 -11.500IDP91504 putative translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] VP1670 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  12  327...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EVNQLIQQLVDKVYVALPTASNE-KEVRLFLSEGQLKGGEIHIKLDSQGYSVTIRQEHALSIINQQARQDLAERLNRMG-QPLRVSISEQTSQHGHTQQDQQQSRQQRSVYEEWQPEADQ........... 446
6 -7.210IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  9  1MISNTAS-NQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKMRFAVAQPAAVASNNVNDLIKVTKQTIKVGDGKDNVAAAHDGKDIEYDTE.................................................................................................................................................................................................................................................................................................................................. 314
7 -7.150IDP04201 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0499 [Clostridium perfringens ATCC 13124]  ali follow..  9  207.............................................................................................................................................................................................................................................................................................................................................................YKRFKEYKANSQINILEKQLDYQKNYYEKVINNYGEARKALHDMNNHMSVIKYFLENKDYKNMDDYIQSLSERIVTNKDNNICSNKVINAICLDKCERCKKEGINIRFDTIINKKLKIDDLDLCIVLGNLIDNAIEACE----KIN---DKEIQKVIQVSARIYLNQIYIKV-INSKNNKVEKRNNKTSKKDKKNHGIGLENV----------------KEAVHKNHGDIEIKDSKNTFEVSLYMK... 430
8 -7.070IDP04693 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA5598 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  154............................................................................................................................................................................................................................................................................................................................................................................................................................NQKKMLRNQLNEANEQIKDLVKREERQRIARDLHDTLGHTLSLITLKSQLVEKLIRASTEAKEITQTSRTALKQLRELISDMRMITVEEELEQIKAILQAANIRLEIKQETSASSLSPIEQNI--LREAVTNV--GELILTVEDNGIGLADQNHDGNGIRGMKERSVELDMINPGTLLTVKVP... 364
9 -6.760IDP04237 putative sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0863 [Clostridium perfringens ATCC 13124]  ali follow..  12  210..............................................................................................................................................................................................................................................................................................................................................................................NIEKKSKEIELLNSNLEQNISSLRKLKHDYGSQISYLYGLHLMGNYEKLGELLKNIIDGNDNIINNIVVSNDTSVNTINLKDITVFIDENADLLETNVNELDFQRIVSNILRNSIEALDG-----------------GSIKINTYYSFNYFVLKIQNNGPEIP------DKILNKIFDSG-------FTTKENKESNNGFG-KELVESYNGKIQVSSTDEFTEFTIYLP... 417
10 -6.720IDP04185 sensor protein UhpB [Vibrio cholerae O1 biovar eltor str. N16961] VCA0683 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  279.............................................................................................................................................................................................................................................................................................................................................................................................................IAISRQHQLALLLQKMNTRLAKELREKQDLARQLVSVEEQIRKSVARELHDEIGQNITAIQIQSMLAERLASNDQAKQAASSVQSLAMRIHQSTRQLLKQLRPDELGTTRVTLYRIVQELLNNICKHAKAVHISLFPGSEMVLEVKDDG-----IGLPTDWRVRG--GLSERVSALGGQLKMTSSTFQTGTRIIVNLP... 512
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.