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Query: IDP02265 gene: psaA; pH 6 antigen precursor (antigen 4) (adhesin) [Yersinia pestis CO92] YPO1303 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKMKCFAKNALAVTTLMIAACGMANASTVINSKDVSGEVTVKQGNTFHVDFAPNTGEIFAGKQPGDVTMFTLTMGDTAPHGGWRLIPTGDSKGGYMISADGDYVGLYSYMMSWVGIDNNWYINDDSPKDIKDHLYVKAGTVLKPTTYKFTGRVEEYVFLast
1 -109.000IDP02265 gene: psaA; pH 6 antigen precursor (antigen 4) (adhesin) [Yersinia pestis CO92] YPO1303 [Yersinia pestis CO92]  ali  100  1MKMKCFAKNALAVTTLMIAACGMANASTVINSKDVSGEVTVKQGNTFHVDFAPNTGEIFAGKQPGDVTMFTLTMGDTAPHGGWRLIPTGDSKGGYMISADGDYVGLYSYMMSWVGIDNNWYINDDSPKDIKDHLYVKAGTVLKPTTYKFTGRVEEYVF 158
2 -94.300IDP93890 adhesin [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005760 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  45  1MNMKKFVKKPLAIAVLMLASGGMVNMVTVINSKDISATKTVKEGGSFSVEFKATENEIVSGKLDADTPAFHLVMSDSGEHKGWNVRPTGASEGGQMVSADGTRVDLHTNELSWDN--DHWWIDDGSER-VEATFFLAAGDEVKAGEYQFTGRVEEYV. 158
3 -8.980IDP05159 gene: calY; camelysin [Bacillus anthracis str. Ames] BA_1290 [Bacillus anthracis str. Ames]  ali follow..  14  1MSLK---KKLGMGVASAALGLSLIGGGTFAYFSDKEVSNNTFAAGTLDLTLDPKTLVDIKDLKPGDSVKKEFLLKNSGS............................................................................... 76
4 -8.720IDP05667 hypothetical protein lmo0462 [Listeria monocytogenes EGD-e] lmo0462 [Listeria monocytogenes EGD-e]  ali follow..  10  1..MNKLVLSTLSVAAMGMVIFSGGTAYAADKEGNTVVEYSVEGDYTLVV---PEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELERVGATSDVITSSFKSNNSTVT--GYAIEETEVSKIQIGSPQGDKKAGAYQFTAAFK.... 161
5 -8.580IDP05463 spore coat-associated protein [Bacillus anthracis str. Ames] BA_1288 [Bacillus anthracis str. Ames]  ali follow..  14  1MTLK---KKLGMGIASAVLGAALVGGGTFAFFSDKEVSNNTFATGTLDLALNPSTVVNVSNLKPGDTVEKEFKLENKGT............................................................................... 76
6 -7.820IDP90543 gene: ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC2182 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  11TVWPSPAKLNLFLYITGRRANGYHDLQTLFQFLDHGDELTITANNSGNITLSPALADV-ALEDNLIYKAAMALKNAAQSPLGADILPMGGGIGG---SSNAATTLVALNYLWQTGLSDDQLAEIGLALGADVPVFTRGFAAFAEG............. 157
7 -7.450IDP91976 hypothetical protein HMPREF0837_10616 [Streptococcus pneumoniae TCH8431/19A] HMPREF0837_10616 [Streptococcus pneumoniae TCH8431/19A]  ali follow..  8  1..MQTKTKKLIVSLSSLVLSGFLLNHYMTVGAEETTTNTIQQSQKEVQYQQRDTKNLVENGDFGQTEDGSSPWTGSKAQ--GWSAW---VDQKNSSADASTRVIEAKDGAIT---------SPEKLRAAVHRMVPIEAKK-----KYKLRFKIK.... 135
8 -7.230IDP05418 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_1561 [Bacillus anthracis str. Ames]  ali follow..  11  1MSINKWLFRFIGFLVMLVVITTLNSLNVFASVNDLAQPIASAKVIEVELNFNPNVITIPIN----ESTTLLLKNKGKSEHT............................................................................. 80
9 -7.090IDP90560 gene: ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Yersinia pestis CO92] YPO2014 [Yersinia pestis CO92]  ali follow..  14  13AKWPSPAKLNLFLYITGQRADGYHQLQTLFQFLDYGDQLTIEPRDDNQIRLLTPIAGVENEQN-RAAKMLQKHPGNTPVPRGADILPMGGGLGG---SSNAATVLVALNLLWQCGLTDEQLADLGLTLGADVPVFVRGHAAFAEG............. 162
10 -6.930IDP06529 gene: acm; collagen-binding MSCRAMM Acm (Fms8) [Enterococcus faecium DO] AFK59905 [Enterococcus faecium DO]  ali follow..  14  1..MKKCRNIILSMLFIITNITSLIDISSNVTSLTVD-PTNITDGGNIKVSFDEKKQNIQPG----DYLWINWNIRGEGFQKEIPLMIENKNVGTLTVRKDSAQVVFNENIKN.............................................. 121
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.