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Query: IDP02272 neutral metalloprotease, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA2183 [Bacillus anthracis str. `Ames Ancestor`], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFNKKMVAMAMTVPLVMGTLSTVSAVETKKQVKVEAYSPQKKAIEYLKGNANQYGLKPDLSDLQYISTTETPVASYVRFQQVVNGAPVFSNQITVTLNGEGKGVLAVSDYQPIKAVKQVTEKISEKDAIQKSMAYVGEASEQNLWAPTEKEFGYIIEEGIARPVYKVVVHSNNPFGAWETFIDAENGKLIKKVDINRKVEGTGKVFLPNPVVSSGSLAGLKDNNDADSTALTNQLKTVTLKGLDGTGFLIGEYVTISSKARTKSTNLQFNYTRANDSFEDVMSYYHIDTLQRYIQSLGFQNINNRSIKVNVNGTTADNSFYSPTTKALTFGTGGVDDAEDAGIIAHEYGHSIQDNQVPGFGSSAEGGAMGEGFGDFLGATYEDAVSTTGYGKACVGEWDAAAYSSSDPTCLRRLDTNKVYPKDMKNQVHADGEIWSQGQYEMAQAFGRDVATKIILQSHWSLTPNSKFSDGAKAIKQADALLYGGQHAADIDRIWAARGISTNLast
1 -161.000IDP02272 neutral metalloprotease, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA2183 [Bacillus anthracis str. `Ames Ancestor`]  ali  100  1MFNKKMVAMAMTVPLVMGTLSTVSAVETKKQVKVEAYSPQKKAIEYLKGNANQYGLKPDLSDLQYISTTETPVASYVRFQQVVNGAPVFSNQITVTLNGEGKGVLAVSDYQPIKAVKQVTEKISEKDAIQKSMAYVGEASEQNLWAPTEKEFGYIIEEGIARPVYKVVVHSNNPFGAWETFIDAENGKLIKKVDINRKVEGTGKVFLPNPVVSSGSLAGLKDNNDADSTALTNQLKTVTLKGLDGTGFLIGEYVTISSKARTKSTNLQFNYTRANDSFEDVMSYYHIDTLQRYIQSLGFQNINNRSIKVNVNGTTADNSFYSPTTKALTFGTGGVDDAEDAGIIAHEYGHSIQDNQVPGFGSSAEGGAMGEGFGDFLGATYEDAVSTTGYGKACVGEWDAAAYSSSDPTCLRRLDTNKVYPKDMKNQVHADGEIWSQGQYEMAQAFGRDVATKIILQSHWSLTPNSKFSDGAKAIKQADALLYGGQHAADIDRIWAARGISTN 503
2 -85.700IDP01752 gene: nprB; neutral protease B [Bacillus anthracis str. `Ames Ancestor`] GBAA5282 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  17  1MKKQVISSALALTVIAGGFGTFGATTTKAEEQKIEGLDKKETVFQYLESKKDMFKLAGNIDKVVGEEKDAESGTTHVKLVEKHNNIPVYGSDQTVTLDKENNVKAFFGQVIPNLEDIPEFASISAEQAETIAKADIEKELGKKNYDGVKKDLFVYEKDGKYYLAYLVKASISKPPGYWHYFVDATNGNVIEKYNAVDHITGFGYEVLGARQSFEIAQDEKTGAFNLFDGKRGQGVHTFDADNMDENL------FNIFSQWFGYTGLEVESKNKFFDDKAAVDAHVNAGKVYDYYKKTFNRNSFDDKISSVHVGENWNNAAWNGVQMMYGDGDGTTSLSAGLDVIGHELTHAVTEH-TANLVYKNESGALNESLSDIMGVMVEKKSWDLGADIYTPGKPGDALRSLKDPASIPNPLNKRYTGTADNGGVHINSSINNKAAYLVSDGVGREATEKIYYRALTYLTANSDFKMMRQAALQSAEDLYGSKAVQAVTKAYDAVA.... 547
3 -82.600IDP02404 neutral protease [Bacillus anthracis str. `Ames Ancestor`] GBAA2730 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  1MKKKTLTKVALTTGLALTAVAPYGVGHAEETDQPSQKAPENVVKDALKEKPKQVNGETGVDYKVLQKRGSYDGTTLVRIQQTYEGKEVYGHQLTAHVDNSGVIKSVSGDSAQNLKQEKKPINLSKDEATQYIYTKYGNDINFISEPEVKEVIFVDENNGQASNAYQVTFEAATPYISGTYLINAQNGDMLKNMVQESNLKASEKLVGALKKSKKSSLTSLTGTGKDISKQSNGKYALADYTRGQGIETYDVNYRDITKEESYYPGTLATSTSTTFNDPKAVSAHYLATKVFDFYKDKYNRNSFDNQ-GDTNDPKNWQNALSANNGSMLVYGD---PIVKAYDVAGHEFTHAVTSS-ESNLEYYGESGAINEALSDIMGTSIEKYVNN-GSFNWTMGEQTSVFRDMENPTSVPSYSEFNDFNGWDQGGVHFNSSIINKVAYLIAKGIGEDKMFDIFYYANTELNMTSNFKELRSACIRVATNKYGSAEVQAVQKAFDAAKI... 566
4 -81.900IDP02657 gene: mpl; Zinc metalloproteinase precursor [Listeria monocytogenes EGD-e] lmo0203 [Listeria monocytogenes EGD-e]  ali follow..  16  1MKSKLICIIMVIA--FQAHFTMTVKADSVGEEKLQNNTQAKKTPADLKALPDSCEAKDFYKNFKILDMKDKLGVTHYTLALSSGGYLTDNDEIKVHVTPDNKITFINGDLQQGQLRITNQIKITEKNAIEKAFEAIGQSEAKSYVGNPVKEKEIILNSRTKRLVYNIKLIFAEPVASWIVQVDVETGAILKKQNMLSEVERADTHKDFQALGKGANRLLQRPLHVMKINDL------YLVDRTHKGLIRTFDLKHNTDTSFGKVVSNKTNMFTDPEFSSAVDAHFYASEVYEYYKNVHQLESLDGKDSFVHYGLNCNNAFWDGQEILYGDGDKKNPFSCAKTIVGHELTHAVIQY-SAGLEYEGQSGALNESFADVFGYFIAPNHWLIGEDVCVRGSRDGRIRSIKDPDKYNQAAHMKDYEEGDWGGVHYNSGIPNKAAYNTITKLGKEKTEQLYFRALKYLTKKSQFTDAKKALQQAAKDLYGEDASKKVAEAWEAVGVN.. 510
5 -78.300IDP02702 neutral protease [Bacillus anthracis str. `Ames Ancestor`] GBAA3442 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  17  1MNNFVKLGLTTGVVLSAIIPYGGVHAATSQKSAENVVKDALKGKTEQALSSKQVNTESKVNYNVTQSRKSYDGTTLVRLQQTYEGRDVYGYQLTAHINDDGVLTSISGDSAQDLQQQKQPIILSEEDAKKQLFKIYGDNLTFVEEPEIKQVVYVDENTNKATNAYQITFSASTPEVSGTVLIDAFVGDLLKELVQKLGIQVDSSIVQSATANKSQDP---SKLTGTGKDDLGMNRTFGITQRSDGTYTLAKDYNNYRRNVWGYLDDLVTSNSTNFTDPKAVSAHYLATKVYDFYKEKYSRNSFDNNISVVHGWNTNGKNIGNPKQWFNAFSNGGDPIVRAFDVAGHEFTHAVTRN-ESGLEYAGEAGAINEALSDILGVAVEKYANN-GKFNWTMGEQSRIFRDMKNPSSISSRYNLPIDADHDYGGVHTNSSIINKVAYLIASGIGEDKMFDIFYYANTELNMTSDFKELKEACIRVAMNLYGSLEVQAVQQAFKAAYI... 565
6 -78.100IDP02314 neutral protease [Bacillus anthracis str. `Ames Ancestor`] GBAA0599 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  19  1MKKKSLALVLATGMAVTTFGGTGSAFADSKNTEATGKKAESVVFDYLNAAKGDYKLAQDSFKVKQAKKDAVTDSTVLRLQQVYEGVPVWGSTQVAHVSKDGSLKVLSGTVAPDLDKKKNKNKIEGAKAIEIAQKDLGVTPK--YEVEPKADLYVYQNGEETTYAYVVNLNFLEPPGNYYYFIEADSGKVLNKYNKLDHVANEDKSPVKQEAPKQEAKTGKGVLGDTKSLNTTLSASSYYLQDNTRGATIFTYDAKNRSTLPGTLWVDADNVFNAAYDAAAVDAHYYAGRTYDYYKATFNRNSINDAKSTVHYGSRYNNAFWNGSQMVYGDGDGVTSLSGGIDVIGHELTHAVTEY-SSDLIYQNESGALNEAISDVFGTLVEYYDN--RNPDWEIGEDIDALRSMSDPTKYGDPDHKRYTGTGDNGGVHTNSGIINKAAYLLANGIGKDKVGAIYYRANTYFTQSTTFSQARAGLVQAAADLYGSAEVAAVKQSYSAVGVN.. 566
7 -65.800IDP00170 gene: hap; hemagglutinin/protease VCA0865 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  1MKMIQRPLNWLVLAGAATGFPLYAA---------QMVTIDDASMVEQALAQQQYSMMPAASGFKAVNTQLPNGKVKVRYQQMYNGVPVYGTVVVATESSKG-ISQVYGQMAQQLEADTVTPDIESQQAIALAVSHFGEQHSLPVENESVQLMVRLDDNQQAQLVYLVDFFVASEPSRPFYFISAETGEVLDQWDGINHAQATGTGPGGNQKTGRYEYGSNGLPG-IDKTGTTCTMNNSAVKTVNLNGGTSGSTAFSYACNNSTNYNSVKTVNGAYS--PLNDAHFFGKVVFDMYQQWLNTSPLTFQLTMRVHGNNYENAFWDGRAMTFGDGYTRFYPLVDINVSAHEVSHGFTEQ-NSGLVYRDMSGGINEAFSDIAGEAAEYFMR--GNVDWIVGADIGGLRYFDQPSRDGRSIDHASQYYS-GIDVHHSSGVFNRAFYLLANGWNVRKGFEVFAVANQYWTPNSTFDQGGCGVVKAAQDLNYADVVAAFNTVGVNASCGTT 505
8 -16.200IDP01153 yycI protein BA_5712 [Bacillus anthracis str. Ames]  ali follow..  13  99............................KEPFLNTKSLSKDKYNDFLKNYVLDGQ----------KYEFGAMKDSKIYFFQRYKDKPIFQAMIVVELNEKNELVSYTQTMLTDLKEMGESEKITAQTALENLYLKNKIHGNTHVKEAQIGYANLTASTSNNQVTWNLKTEQKQ-----DFFVNAIEGQVMELGEKENQVVDEHTGVRKNGVA................................................................................................................................................................................................................................................................................................... 279
9 -16.100IDP05266 hypothetical protein lmo0047 [Listeria monocytogenes EGD-e] lmo0047 [Listeria monocytogenes EGD-e]  ali follow..  10  1MYKKLATVGMTVLLVGASFNDDKDTSSNNSNNETTSSKSSNNESSSDSLQNKSLDMSYEDAINAFKDKHSDAEISSVELEKS-LGKYVYDNEYEMKFNATKEQLSDETD-EKENEKLSLDGIKSPKEAMDKAVSEQAGDVTS-----------WKIERELDTTYYEVTVKQDN--NKYEIKLNAKTLEILQTE...................................................................................................................................................................................................................................................................................................................... 200
10 -14.900IDP00050 enhancin family protein BA_3443 [Bacillus anthracis str. Ames]  ali follow..  12  1MKRLLVIGIMYTMFFLIGNIHLHADERTNVKEITSLEEP-----TWIFQAGISKGKYHDRQDL---------------------GFIL-NTPLKVRQTNPNFKDKLTVRLLSNDSKNEKSIQVGNEW--------------ITIQGDTPLVPFIDTPYGEEPALLEYQVGNESATKPLPIYKQQGS---------------------------VSQFFSTWDQFDGEYALIQGESFQLFI---------------------PKKDKELVRSLKDFQSLDELIAYYDIFAMYDSIIGLDGSTVENKKSQLKADISGAGGAYYGANWTANSTDSTKMWLDKLSWGTLHEIAHGYQAGFD------NQGIFTGEVSNNLFGVQYQYSKYGKKADQVGWLFNFGKKEQVERNLYNALMKENKNYDD---------------LLTMAKQKAGDEAFAKM-YQGYRKLASNAAFKKGDHSLPDLMNQYYSENVQVDFTPVFERWGFKLN 407
11 -13.300IDP05184 conserved domain protein [Bacillus anthracis str. Ames] BA_5305 [Bacillus anthracis str. Ames]  ali follow..  10  1MSKKKKSRVLVAGVCLATLLTPYGLELPKVYAEMAVEDKEKQQEERVYQLLPKGDVEGMRELHQRGMSFSPYEPT---------GIYV-DEEVVIQVEGTQQIKAYIGTYSYE---KEGPKQFNLHPGENKISSSNGGLLYFYNYHNTGEVVAKVKKGGTPNPLFIL---GKHTTKDWKRMLAENPDPYA--------------------IEMKGENSLLTMHPETVAEHLKQEDPAALLKKHDEIINIEHKMSGLSKDGAGVANQGKHSIHFVEDWYTDDYMYATYYRT----------AYSKGNLESVLNLEELTNDGWG---------------------PWHEVGHQHQQDTWL--------DGLGEVTVNIYSLAVQTTFG-------------------HKTRLEQEGRYEAAFAYLGKPDAQEKMNEFEKMFWQLHLAYGDQFYPNLMYRLLHDTELPKSDEEKKQMFIYMTSKVAG----QNLIPFFDKWGLSAN 412
12 -11.900IDP05039 conserved domain protein [Bacillus anthracis str. Ames] BA_2214 [Bacillus anthracis str. Ames]  ali follow..  14  1MKKKWKIALLVCFTVVSVAFVSQRIVSKQGETILSEKQIQSIVSEQYPGKIKSMKLINKEEQDFYKVNLLNEQGSYEIIVDAKNGITKEKAEEMALQKVQGEIKYTEKTTGQIQLLEKPMTKVTEEQAKDIAVQQVPGNEKGIRLEQKNEKNIYITEEQAKEVAYQIIIKKQT--ETVDVRVHTITGEIIS........................................................................................................................................................................................................................................................................................................................ 284
13 -10.000IDP02151 hypothetical protein GBAA3159 [Bacillus anthracis str. `Ames Ancestor`] GBAA3159 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  26  130.....................................................................................................................................................................................................................................................................................................................................................STGVHEFGHAI------GIGHNSGTSIMNSNRNDKNGV............................................................................................................................ 171
14 -9.900IDP04063 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_0514 [Clostridium perfringens ATCC 13124]  ali follow..  10  1MNKRKIVASILTTSLLVTSLVGCVGSNNKANTSSNDSKVQESVEN-FNDLRTYVGKTYNEVNENIEEVAGKKVIVSSSYSTRMFNYNA---NLILELDDSKNISAVSVHF----------KGIEPENILENIKKVLGEPKISKDKENGDSKVYSWEKDGY-----QYKLSQVGE----ETIITVNKSAI.......................................................................................................................................................................................................................................................................................................................... 176
15 -9.610IDP00180 enhancing factor (viral) YPO0339 [Yersinia pestis CO92]  ali follow..  8  1.........................................MRVIFMRQVTKSKKIKILPYPEWLVKAGMSKGIDH---DRQHLGIIL-GEMIKVRQVNAEYKEKLKLYLLNDNKNTQRSISFNTDWIELSV---------------DAISVPFINTPYSDGIIPEIVFEYPDTSKLLPVYEKGED---------------------------ESIFFESWDKQNAEFGVVESEYVIILI---------------------PEVSKDRLKSFSTSGGIDTVLGFY--QDIFSFNNSLAGDGNTRNRYFAKADKGGGGAAYYSNNWIASSSGSINTFWLSPNA-CLHEIAHGYQGGFI-----DDKYFSTREVWNNIYAACYQDVMLGAEKFN------KGWLYNFGKQKEVEKSILNNINNGKEVNAWGERSKL---FIMLMLEKAGVNCFTHFNQIYRERKNTDQSVGSVLDMLSNSFATVENRVD---VTLFLQMVGGHIS 391
16 -9.150IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames]  ali follow..  8  1MRRKVLSSLAIAAIIGCTSVMSAPLAYAETPAKEKENVSTTPIDYNLIQ--------EDRLAEALKER----GTINPASSKEETKKAVEGDQANKEILPADTAKEVKKVKEKKMEEKEKVKKPEKNVSPEQKPEPNKKQLNGQVPTSKAKQAPYKGSVRTDKVL--LLVEFSDSREHYQKMLGSKVKTFKQYYEEQSGGSYTTDGYVTEWLTVPGKASDYGADGSSGHDNKGPKGARDLVKEALHAAAEKGLDLSQFDQFDRYDTNSDGNQNEPDGVIDHLMVIH------------------AGVGQEAGGGKLGDDAIWS-GGKVAAHDYTIEPEDGAVGVFAHEFGHDL-------------------GLPDEYDTKYTGTGSPVEA................................................................................................................. 404
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.