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Query: IDP02284 gene: grpE; heat shock protein GrpE [Coxiella burnetii RSA 493] CBU_1293 [Coxiella burnetii RSA 493], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSKNNPESETKAKNKWEKVMEAEEEQEEGRGDGSQEMEPHREGLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSLTLDLLHNTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQLNGRVLRAARVIVAGLast
1 -90.000IDP02284 gene: grpE; heat shock protein GrpE [Coxiella burnetii RSA 493] CBU_1293 [Coxiella burnetii RSA 493]  ali  100  1MSSKNNPESETKAKNKWEKVMEAEEEQEEGRGDGSQEMEPHREGLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSLTLDLLHNTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQLNGRVLRAARVIVAG 204
2 -83.900IDP01403 heat shock protein GrpE VC0854 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  33  1MSNEEIKNKDEQLQ---QDAVETEAEVVGTDADIDWNQAADEIDEKEAKIAQLEAALLVSEERVKEQQDSVLRARAEVENMRRRSEQEVDKARKFALSRFAEELLPVIDNLERAIQAADGEVEAIKPLLEGVELTHKTFVDTIAKFGLKEINP-HGEVFNPEFHQAMSIQESAEHEPNTVMFVMQKGYELNGRVLRPAMVMVS. 199
3 -82.300IDP00491 heat shock protein GrpE YPO1107 [Yersinia pestis CO92]  ali follow..  27  2...............SSKEQKTPNEQVSEEMENTAEQQVEATQETGECVDPRVAELEVQLSDALQRERESLLRAKAEVENIRRRTELDVEKAHKFALERFSSELLPVIDNLERALDTADKTNTELISMIEGVELTLKSLLDAVGKFGIEVVGE-THVPFNPEVHQAMTMLESADHEPNHVMMVMQKGYTLNGRLLRPAMVAVSK 189
4 -80.700IDP02360 gene: grpE; heat shock protein GrpE [Francisella tularensis subsp. tularensis SCHU S4] FTT1270c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  33  2.........SKQEKSNVEDKSLDIETAAQVETAQESASGALEELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFSKELLPVIDSIEQALKHE-VKLEEAIAMKEGIELTAKMLVDILKKNGVEELDP-KGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYMLNGRIVRAAKVVIVK 194
5 -79.100IDP01229 Protein grpE (HSP-70 cofactor) BA_4540 [Bacillus anthracis str. Ames]  ali follow..  26  2...............EERNEQVVEEVKEAQVEEAVTPENSEETVEEKSEAALLQEKVDELQAKLTETEGRTLRLQADFENYKRRVQMDKQAAEKYRAQSLVSDILPALDNFERAMQVE-ATDEQTKSLLQGMEMVHRQLLEALNKEGVEVIEA-VGKQFDPNEHQAIMQVEDSEFESNAVVEEFQKGYKLKDRVIRPSMVKVN. 187
6 -78.700IDP06133 gene: grpE; heat shock protein GrpE [Helicobacter pylori J99] NP_222823 [Helicobacter pylori J99]  ali follow..  30  2.............KDEHNQEHDHLSPKEPESYQKAYACKEQQGEEKQEASEKEGEIKEDFELKYQEMREQYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHKSA-VEVDKESALTKGLELTMEKLHEVLARHGIEGIEC--LEEFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSIAK 189
7 -8.510IDP05132 gene: flhB; bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium difficile 630] CD0262 [Peptoclostridium difficile 630]  ali follow..  10  463.........................................................KQLRMTKQEVKDEYKNSEGD-PEVKAKIKQKQRQISSQRTMQAVPSATVIVTNLSIAVRYEKGKDQAPVVVAKGADYLAFKIREIAKGNDIPIIEVEIDQEIPEDMYQA-------------FAEILVAVYKIKNR........... 598
8 -7.690IDP04703 putative type III secretion apparatus protein [Yersinia pestis CO92] YPO0273 [Yersinia pestis CO92]  ali follow..  15  212.........................................................KQLKMSHDEVKREYKDSNGDIKQKRRQLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVEVACGDTIPEQFFEPVAAL.................................. 337
9 -7.510IDP91183 gene: yscU; type III secretion system protein [Chlamydia trachomatis D/UW-3/CX] CT091 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  11  212.........................................................KELKMEKFEVKQEFKDTEGNIKGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRAKRIIAEAEKYGVPIMRGKELKFIPETTYEAVGEI.................................. 337
10 -7.350IDP02165 gene: folA; dihydrofolate reductase [Coxiella burnetii RSA 493] CBU_1993 [Coxiella burnetii RSA 493]  ali follow..  11  24........................................................................HLPADLAHFKSITLGKPIVMGRRTFDSIGKPLCDIFYSLDDALSALTKEP---EVIIIGGARIFKEALPKADKMILTIINHSFGDVYFPEWNDKEWKITSQIKHERDEKNPYPFQFLELRRL.......... 161
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.