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Query: IDP02342 putative periplasmic protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0737 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKMSKHIVLSFAVSSLLFSQAYALLSGGKFTHGTSGTIHTSGNTVTITGKGQNHVIQWGGGFNIGQNESVNFNGKNQNYLNIAYQKDASKIDGALNRGNNNIFLVNPMGVLIGKTGTITAGKFVASTTALSDDNVKTFLEKGASFSPAFDVSKQGNIINLGKINADNIVLIGNKVEINKGKITLDVLKLEGNKVYVDAGVVKDTKNIVAKAEQEAIIQQSITSFEEDGALLGNSSSKFSFDDSSKVKNWTKYGSIADATEWNKFADFWNVNKEKFRTAFDHFRLIDDIDFSGVKTYIVGDNTSNAFAKSFDGSGYALKNVNINSSNQYVGIFGVVQNSYIRNFNIQGLKIASTGYDALast
1 -100.000IDP02342 putative periplasmic protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0737 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali  100  1MKKMSKHIVLSFAVSSLLFSQAYALLSGGKFTHGTSGTIHTSGNTVTITGKGQNHVIQWGGGFNIGQNESVNFNGKNQNYLNIAYQKDASKIDGALNRGNNNIFLVNPMGVLIGKTGTITAGKFVASTTALSDDNVKTFLEKGASFSPAFDVSKQGNIINLGKINADNIVLIGNKVEINKGKITLDVLKLEGNKVYVDAGVVKDTKNIVAKAEQEAIIQQSITSFEEDGALLGNSSSKFSFDDSSKVKNWTKYGSIADATEWNKFADFWNVNKEKFRTAFDHFRLIDDIDFSGVKTYIVGDNTSNAFAKSFDGSGYALKNVNINSSNQYVGIFGVVQNSYIRNFNIQGLKIASTGYDA 358
2 -38.500IDP91527 gene: etpA; EtpA [Escherichia coli ETEC H10407] AAX13509 [Escherichia coli ETEC H10407]  ali follow..  18  46..RAMALSLLSGMMIMAHPAMSANLPTGGQIVAGSGSIQTPSGNQMNIHQNSQNMVANWNS-FDIGKGNTVQFDQPSAVALNRVVGGGESQIMGNLKA-NGQVFLVNPNGVLFGEGASVSTSGFVASTRDIKNDDFMNRRYTFSG-----GQKAGAAIVNQGELTTGYIVLAADRVSNSGTIRTGKTVLAASERITLQLDNGGLMSVQVTGDVVNALVENRGLVSARDGQVYLTALGRGMLMNTVLNVSGVVEASGMHRQDGNIVLDGGDSGVVHLSGTLQ----ADNASGQGGKVVVQGKNILLDKGSNITATGGQ-GGGEVYVGGGWQGKDSNIRNADKVVMQ-GGARIDVSATQQ 395
3 -25.800IDP01717 putative periplasmic protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0968 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  53  2..KKLNKLSLSLVVGSLLFTQSYALPSGGKFTHGTSG------------------SISVSGGFNIASNETVNFGQGKQNYLNIVYGSKSSHYRWNTQ..................................................................................................................................................................................................................................................................... 80
4 -9.950IDP00514 hemolysin YPO3721 [Yersinia pestis CO92]  ali follow..  13  8LSPAGKLAAAVTIISVSVATCYAAGIVGAGDSAHKPDVSSVNGSVINIVQPSASGL-NQFQDFNVGEKGAV--GQAASIILNEVISRNPSLLLGEIFGMTADYILANPNGITCNGCGFMNTNRLVVGNPLIEQGSLKGFE--------TFNNNNWLIIQDKGLTANKILDLIAPRIEVTGMVTSTEAINALSGNNQISTDGQ............................................................................................................................................................ 228
5 -8.850IDP92788 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG36640 [Vibrio cholerae O1 biovar El Tor]  ali follow..  12  54..................................ILLKEELPEETLTVYRGGDLDGWSWSTNKAVALQFANPPLEAKRPLYQLEV--NTKDIITKLTDRNESEVVINPAIL....................................................................................................................................................................................................................................................... 128
6 -8.580IDP00502 putative hemolysin YPO2045 [Yersinia pestis CO92]  ali follow..  13  17.......ILSLILTPITNSYSAEIEAAGNTYMRGNEHI-NPDGSVINIAPPSEHGL-NQYMEFHVNEHGVV--GSPARVILNEVVGPNASVLAGDIVGIPADYILANANGISCQGCSFAPEFNVTLAVGKVVTVRGDLRSIDTIGNANLLNVSNDRDDNN----MADALTLIAPVISTNGHIKVGDADFVVGQN.................................................................................................................................................................... 229
7 -7.950IDP00401 putative hemolysin YPO2490 [Yersinia pestis CO92]  ali follow..  16  51.....LSFSLLLALGCVSLSVQAAIVADASAPGNQQPTIINSANQVNIQAPSSGGV-NVYSQFDVDGRGVI--RGEASIILNEVNSRDPSKLNGEVAGRKAQVVIANSAGITCEGCGFINANRVTLTTGQAQLNN----------------GQLTGYDVERGDIVQDHTDLIARSVKVNAGIWANELSVTTGRNVAVDVAHLGGMKIRLIGTESGVGVHNAGEIGASAGDITITADGMLMNSGQINSSQQLVVNTAADIENTGVLYAQGNTQLTTAGTLSNSGTLAAGGDTSSDNSAITSGTLSVEASGKITAQGKNISGTAQRFTAHRLDLSGSQTQSRDITLIAQGGEIDLTG... 464
8 -7.730IDP93939 hemolysin [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001006625 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  15  15.....LATLLSLILTPATMPYAAGIEAAGDNAHRPEISSTIYD-LINIVAPSVAGL-NQYQEFNVDQRGVI--ANPASVILNEVVGSNTSTLNGHQQGMPADYILVNANGVICNGCSFAPGFTLAVGAAVIDDGQVLSMSTKGNSAILNIENTDKNT-------VADVLTLIAPVINVDGDVLVKDKLSFIVGQNDVGIDTGRLLKSNLSDSLVKTI............................................................................................................................................. 247
9 -7.400IDP06515 protein of hypothetical function DUF552 [Enterococcus faecium DO] AFK58423 [Enterococcus faecium DO]  ali follow..  16  111.............................KITVMEPRAYSEAMAIAKRIIAGEATLVNFHLVEEKQARRIVDFLTGTVYALD-----------GDIKRVGDEIFLCTPTGMEIDSSTAQSFAD........................................................................................................................................................................................................................................... 193
10 -7.050IDP02471 hypothetical protein lmo0880 [Listeria monocytogenes EGD-e] lmo0880 [Listeria monocytogenes EGD-e]  ali follow..  11  1MKKWLVFAIICLIITGFLSPKAEAATDYGSSFFTNVSLQNQNGEQATNFKENSKVRVDFVITQPVASGETMTLTIPDQLKL-------INYGGFPLMDSQGNTITIDQVTLTFTDNTHTDLSGSLFYNATFNSKNIQTDQVNPIAFP--VKNTTQTVTPYISKVNSGGGTGSPTIVFKQGRMDDKDLSILH--TVTLNNALTPIDNAVYT.................................................................................................................................................... 212
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.