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Query: IDP02372 gene: mdh; lactate dehydrogenase [Francisella tularensis subsp. tularensis SCHU S4] FTT0535c [Francisella tularensis subsp. tularensis SCHU S4], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGGHGDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALLKTGSAYYAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPIEVEISDKEREQLQVSINAIKDLNKAAAEILAKLast
1 -100.000IDP02372 gene: mdh; lactate dehydrogenase [Francisella tularensis subsp. tularensis SCHU S4] FTT0535c [Francisella tularensis subsp. tularensis SCHU S4]  ali  100  1MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGGHGDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALLKTGSAYYAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPIEVEISDKEREQLQVSINAIKDLNKAAAEILAK 319
2 -88.200IDP05606 gene: mdh; malate dehydrogenase [Bacillus anthracis str. Ames] BA_4837 [Bacillus anthracis str. Ames]  ali follow..  47  3IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGHGDDMVPLVRYSYAGGIPLETL-----IPKERLEAIVERTRKGGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRVLPAIAYLE-GEYGYS-DLYLGVPVILGGNGIEKIELELLADEKEALDRSVESVRNVMKVL...... 311
3 -83.100IDP02362 gene: ldh; L-lactate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1923 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  27  3KGINRVVLVGTGAVGCSYAYCMINQAVAEFVLVDVNEAKAEGEAMDLSHAVPFAPAPTRV-WKGSYEDCKDADLVVITAGLPQKPGETRLDLVEKNAKIFKQIVRSIMDSGFDGIFLIATNPVDILTYVTWKESGLPKERVIGSGTTLDSARFRYMLGEYFNIGPHNIHAYIIGEHGDTELPVWSHVSVGIQKLQTLLEKDN-TYNQEDLDKIFINVRDAAYHIIERKGATYYGIGMSLLRVTKAILNDENSVLTVSAYLE-GQYGQK-DVYIGVPAVLNRGGVRELEVELSEDEELKFDHSVQVLKETMAPV...... 313
4 -75.700IDP92100 malate dehydrogenase, putative [Toxoplasma gondii ME49] TGME49_118430 [Toxoplasma gondii ME49]  ali follow..  58  155MSRRKIGLIGGGNIGATLALLSAVKELGDVVMFDVVQDLPQGKCLDLYQLTPISGVDVRFEGSNDYSVLKDADVIIVTAGVPRKPGMSRDDLLAINAKIMGQVGEAIKQYCPNAFVICITNPLDVMVYILREKCGLPPHKVCGMAGVLDSARLRTFLSERLNVSVDDIHALVMGGHGDTMVPLPRFTTVGGIPLPELVKMGMISQQEVDDIVQRTRNGGGEIVSLLKTGSAFFAPAAAGVLMAEAYLKDRKRVLPCAAYLN-GEYGVK-DMYVGVPCVIGAGGVEKVELDLTPEEKKMFERSVESVKTLLAAAPKS... 469
5 -72.200IDP91814 gene: mdh; malate dehydrogenase, NAD(P)-binding [Escherichia coli str. K-12 substr. MG1655] b3236 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  25  2....KVAVLGAGGIGQALALLLKTQLGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFS-GEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIALKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVA---------DLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAY-VEGDGQYARFFSQPLLLGKNGVEER-GTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
6 -70.700IDP91419 malate dehydrogenase [Vibrio vulnificus CMCP6] VV1_0673 [Vibrio vulnificus CMCP6]  ali follow..  25  2....KVAVIGAGGIGQALALLLKNRLPASDLALYDIAPVTPGVAADLSHIPTHVSIKGYA-GEDPTPALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNPVNTTVPIALKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGVTILPLLSQVEGVEFSDE----------EIAALTKRIQNAGTEVVEAKGGGSATLSMGQAACRFGLALVKALQGEEVIEYAYVEGN---EHASFFAQPVKLGKEGVEEI-GELSDFEKAALDGMLETLNSDIQIGVDFVK. 310
7 -27.100IDP00498 putative glycosyl hydrolase YPO0166 [Yersinia pestis CO92]  ali follow..  17  1MSTFKITIIGGGSSYTPELVDGLIQPVTELALVDVEQGRQKVEIIAALTQRMLARHGKVSVHYSLDEAIRGARFVLTQFRVGQLPARAADERLGRTIPVMLDIAANVERLAPDAWIINFTNPAGIVTEAVSRYTKA---KIIGL----VPISMHHMIAKLLQAPYEDLQLRFAGLNHMVWV---HEVLQRGKYVTADVLKMLCDGASLSMNNIKEAPWPPEFLQAMGAIPCPYH-SEVALELIRAIHNNLGTQLVVNTTNRGAIRGLSDDSVVETNCIIDAKGAHPLTFGPLPVSMHGLTQQVKAYERLTIDA...... 391
8 -10.500IDP90559 gene: rfaD; ADP-L-glycero-D-mannoheptose-6-epimerase [Vibrio cholerae O1 biovar eltor str. N16961] VC0240 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  2.....IIVTGAGMIGSNIIKALNERGITDILVVDHLKNGRKFKNLVDLQIADYMDRDDFLAQIMAGDDFGFIDAIFHEGACSATTEWDGKYVMLNNYEYSKELLHYCLDREIPFLYASSAATYGETDTFIEEPQYEGALNVYGYSKQQFDNYVRRLWLDAKQHDETLSQITGFNVYGPREQHKGSMASVAFHLNNQMNAGENPSENFKRDFVYVGDVAAVNLWFLDHGVSGIFNCGTGKAESFNEVAKAVIAFH-----------GRGEVETIPFPDHLKGAYQEFTEADLTKLRAAGCDVQFKSVAEGVAEYMALINR 313
9 -9.830IDP02524 gene: ilvC-2; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1852 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  14LQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGFEVMSVS------------EAVRTAQVVQMLLP---------------DEQQAHVYKAEVEENLREGQMLLFSHGFNIVAMVAPKSPGHLVRRVFQEGNGVPAL-IETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYFEC---LHELKLIVDLMYEGGLTNMRHSISDTAEFGDYVTGSRIVTDETKKE--MKRVLTEIQQGEFAKK--------ILENQAGRPTYNAMKKAEQNHQLEKVGEELREMMSWIHA.... 328
10 -9.780IDP00758 gene: cap5E; capsular polysaccharide biosynthesis protein Cap5E SACOL0140 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  2FDDKILLITGGGSFGNAVMKQFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGDVRDSQSVETAMRDVDYVFHAAALKQVPEFFPVEAVKTNIIGTENVLQSAIHQNVKKVICLSTYPINAMKAMMEKVFVAKSRNIRSEQTLICGTRY----------------GNVMASRG-SVIPLFIDKIKAGEPLTITDPDMTMSLEDAVELVVHAFKHAETGDIMVQKAPS-----STVGDLATALLELFEADNAIE--------------------IIGTRHGEKKAETLLTREEYAQCEDMGDY............. 278
11 -9.600IDP05101 gene: hbd; 3-hydroxybutyryl-CoA dehydrogenase [Clostridium difficile 630] CD1058 [Peptoclostridium difficile 630]  ali follow..  15  1...MKLAVIGSGTMGSGIVQTFASCGH-DVCLKSRTQGAIDKCLALLDKNLTKAEILSHVSSTTNYEDLKDMDLII--------------EASVEDMNIKKDVFKLLDELCKEDTIL-ATNTSSLSITEIASSTKRPDK--------------------------------VIGMHFFNPVPM--------MKLVEVISGQLTSKVTFDTVFELSKSINKVPVDVS-------SPGFVVNRILIPMINEAVGIYA-DGVASKEEIDEAMKLGANHPMLIGLDVVLAIMNVLYTEFGDTKYRPHPLLAKMVRA....... 265
12 -9.400IDP90552 gene: rfaD; ADP-L-glycero-D-mannoheptose-6-epimerase YPO0058 [Yersinia pestis CO92]  ali follow..  7  2.....IIVTGAGFIGSNIVKALNNIGYKDILVVDNLKDGTKFVNLVDLDIADYMDKEDFVASIVAGDDMGDIDAIFHEGACSSTTEWDGKYMMDNNYQYSKDILHFCLDRSIPFLYASSAATYGGRTDNFIEDRQYEQPLNVYGYSKFLFDQYVREILPQADSQICGFRYFNV--YGPREGHKGSMASVAFHLNNQINAGERPSENFKRDFIYVGDVADVNLWFWQNGVSGIFNCGTGRAESFQAVADAVVDYH-----------QSGPVEYIEFPEKLKGRYQAYTQADLTKLRAAGYGKPFKTVAEGVKEYLAWLNR 308
13 -9.340IDP02330 gene: ilvC-1; ketol-acid reductoisomerase [Bacillus anthracis str. `Ames Ancestor`] GBAA1419 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  15LKEKKVAIIGYGSQGHAHAQNLRDNGF-DVVVGLRKGKSWDKAKEDGFSVYTVA------------EAAKQADVVMILLP---------------DELQPEVYEEEIAPNLQAGNSLVFAHGFNVHFDQVKPPVNV--DVFLVAPKGPGHLVRRTFSE---GGAVPALFAVYQDATGVATEKALSYADGIGATRAGVLETTFKEETETDLFGEQAVLCGGVTALVKAGFETLVDAGYQPELAYFECLHELKLIVDLYSVSDTAQWGIQDGTFARGWIAEHKAGKPNFYATNEKENEHEIEVVGRKLRGMMPFVQP.... 329
14 -9.130IDP02583 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA5249 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  2FQIKKAAVLGSGVMGSGIAAHLANIGI-PTLLLDIVPPALTKEEEAKGLTLEHKSVRNRFSNTDDLERLADVDWII--------------EVVVENLDIKKKLFEKVDAVRKPGSIV-SSN-----------TSGIS-------------------VEKMAEGRSDDFQKHFLGTH---------------LKLLEVIPTKKTDPQVLSFMKLFGEDVLGKGVVIAKDTPNFIGNRIGTYGLLVTLQEMVKRGYSIGEVVTGPLIGRPKSATFRTLDVVGLDTFVYVANNVYEEKERDVFKVPAFMHDMLDK....... 292
15 -9.100IDP00425 gene: wecC; UDP-N-acetyl-D-mannosamine dehydrogenase YPO3863 [Yersinia pestis CO92]  ali follow..  11  1MSFETISVIGLGYIGLPTAAAFASRKK-KVIGVDVNAHAVETINRGAIHLDKVVKIAVEGGYLQAVTKPQAADAFLIAVPTPFKGDHE------PDMIFVESAAKSIAPVLKKGDLVILESTSQMAQWLAEARPDLSFPQQAGEAADINIAYCPERVLP-----------------GQVMVELIQNDRIGGMTPKCSARASALYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFALSLICDEQGINVWELIRLA--------NRHPRVNILQP--PGVGGVDPWFIVSQNPQLARLIHTARLVNDVVDRVKAAVAD 309
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;