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Query: IDP02382 hypothetical protein lmo0320 [Listeria monocytogenes EGD-e] lmo0320 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNKYFKNLATILFTVSVLTTSIIASPAMASAYEESHNVSTIYTSPLDTPHVGDTKITGKTTPLSSFSIAIYTSEGRLTGTFFGTTNTDGTYSVDLSDFTVYHPSGYVTTGKVIYEENSFVRSGTETGGDKVIKVTVSYDYIQTAINELFLNNNPTGTILTITDQNAINAVQEQINTVTSSEKESFQEQLNNAQQQLDARIAQEQAAIQAVNQLFLEDSPVNSIKAETTQDLIDQAQTLVDVLPASELKDTLQANIVKAQTELDERSKPVTPPKNDPEPDNPEEPVTPVDPATPIPDEPSTPTDPATPEKPEITTPENPESTVVEADSSENEPEKSADSKIVNNPIQITSQATKTATKQAKSSATKTTLPLPKAGDTETTSSILFGTLMLSSLVLFKRKKLast
1 -126.000IDP02382 hypothetical protein lmo0320 [Listeria monocytogenes EGD-e] lmo0320 [Listeria monocytogenes EGD-e]  ali  100  1MNKYFKNLATILFTVSVLTTSIIASPAMASAYEESHNVSTIYTSPLDTPHVGDTKITGKTTPLSSFSIAIYTSEGRLTGTFFGTTNTDGTYSVDLSDFTVYHPSGYVTTGKVIYEENSFVRSGTETGGDKVIKVTVSYDYIQTAINELFLNNNPTGTILTITDQNAINAVQEQINTVTSSEKESFQEQLNNAQQQLDARIAQEQAAIQAVNQLFLEDSPVNSIKAETTQDLIDQAQTLVDVLPASELKDTLQANIVKAQTELDERSKPVTPPKNDPEPDNPEEPVTPVDPATPIPDEPSTPTDPATPEKPEITTPENPESTVVEADSSENEPEKSADSKIVNNPIQITSQATKTATKQAKSSATKTTLPLPKAGDTETTSSILFGTLMLSSLVLFKRKK 399
2 -20.200IDP91682 gene: ORF73; nuclear antigen LANA [Murid herpesvirus 4] MuHV4gp74 [Murid herpesvirus 4]  ali follow..  13  4..................................................................................................................................................................................................................................................SPPTTRNTTSGKTRSGCKRRCFNKPAAMPPKRRRAPKRPAPPPPPGCQGDEESQGTQTPNPPSPPVPPSPTLPSSPVPPSSPVHE-PPSPSPPPAPPSPDVDVEGLDVGETDDPGPPPPKRYSRYQK-PHNPSDP...................... 138
3 -16.500IDP05012 cell wall surface anchor family protein [Bacillus anthracis str. Ames] BA_5070 [Bacillus anthracis str. Ames]  ali follow..  12  19..................................................................................................................................................................................................................................................................................SSVASADTGTVTKEEATQLQQDKAKKEAAIKEQQKIEEEKKRIAQEQLKNDMAKKEEAIKAQQKSEEGKKEAAQVQPKNAATKKEVAKPAVQGEKLPNTA-SNNVAMMALSACLVGTLFGLKRRN 144
4 -15.800IDP91910 surface protein PspC, partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100003565 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  12  31....................................................................................................................................................................................................................................................QLEKPKPEVKPQLEKPKPEDKPQLEKPKPEVKPQLEKPKPEVKPQLEKPKPEDKPQLEKPKPEVKPQLEKPKPEVKPQPEKPKPDNSKPQADDKKPSTTNNLSKDKQPSNQASTNEKATNKPKKSLPSTGSISN..................... 164
5 -15.300IDP91750 SPG2_STRSG [Streptococcus sp. `group G`]  ali follow..  14  456...........................................................................................................................................................................................................................................................................ETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTEMVTEVPGDPTEPEKPEASIPLVPLTPATPIAKDDAKKDDTKKEDAKKPEAKKEDAKKAETLPTTGEGSNPFFTAAALAVMGALAVASKRK 591
6 -14.800IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  13  709..........................................................................................................................................KVGETIRNVAQINGSSPPGVETTKQGYAFEAKK--VDALDKNVLSGAKFNLEDAFNIVVKDLVSDEDGIIQSSVKNPGT----YLVEIMAPRGYEKLKDKIKEIGNKDIGRIVDIGNIENIRQENPPVNPPAPPNTDEPIVNPPVPPSTDKPRKPSSSSDTEDTIVINPPVPPSEDIINPPIPEVLNPPVPPSEEMIETPVKQIIPIPEVVKPSVSEEKNNKDDTLVNPPVPPKTGDSTTIIGEILLVIGAIVGLIVLRRN 968
7 -13.400IDP05200 pepdidoglycan bound protein [Listeria monocytogenes EGD-e] lmo2714 [Listeria monocytogenes EGD-e]  ali follow..  20  238....................................................................................................................................................................................................................................................................................................................................PAKKQNEAVVTAPDKVKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKGTEWIFVVGVIVILVAVLLLRKR 313
8 -13.100IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  6 1611.TDAEPEEASAVLAPPPVPVPAAAIPSILLPTDGEDGEKEKTKEKKTEKKKEKHTEKKHKKKSEALPESETTAVVTVTPGEEDETSPLVPVPSSIASSEAPEPPASTRVTPAPEPKAKPGLSMGAALLAVRARSRLQRKHLAQQLSSSSSSEVSASSASSLSPSSSSSSDFAETRAKADALRARLQAAQARLAAARETEVSSSETESETSEASFLSSDGEWDALWQSQRAAAMERQQRLQKMVSGVKAAYRRLEEENTRLAATRRRDDKLQRQVEAERERAVELLKEATRRAKEEKDLIARQPPPARDWSDTVVLSTPQIFVNSQPFADSGRDEGGRDEWYEVSDACSRRAESSNESRTTAGAKLRQQQLDLAGRT....................... 1990
9 -13.000IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  784...............................................................................................................................................................TFMANAYLDNQSTYIVEVPILEKENQTDKPSILPQFKRNKAQENSKLDEKVEEPKTSEKVEKEKLSETGNSTSNSTLEEVPTVDPVQEKVAKFAESYGMKLENVLFNMDGTIELYLPSGEVIKKNMADFTGEAPQGNGENKPSENGKVSTGTVENQPTENKPADSLPEAPNEKPVKPENSTDNGMLNPEGNVGSDPMLDPALEEAPAVDPVQEKLEKFTAS................... 1004
10 -12.900IDP05070 putative surface protein [Clostridium difficile 630] CD3246 [Peptoclostridium difficile 630]  ali follow..  11  487.............................................................................................................................................................................................................................KLKSVGKPDAKANISAVSYDYIFPKAIQYYKAVLDLGQKDHSSSLPSSKQNLLSYTIEKKNGQEVNFNIGLPTPVPPIDDDVVNPPVPPTDDTNGHKPKPSPPIDDTVINPPVPPMDDTIINPPVPPTEDAVLNPPVPPMEDAVLNPPVPPTDDTVLNP................... 653
11 -12.200IDP91664 gene: BBC3; bcl-2-binding component 3 isoform 4 [Homo sapiens] NP_055232 [Homo sapiens]  ali follow..  5  41...............................................................................................................................................................................................................................................................EPGLAAAPAAPTLLPAAYLCAPTAPPAVTAALGGSRWPGGPRSRRPDGPQPSLSLAEQHLESPV-PSAPGALAGGPTQAAPGVRGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHRPS..................... 166
12 -12.000IDP06525 gene: fms17; LPXTG family cell surface protein Fms17 [Enterococcus faecium DO] AFK58157 [Enterococcus faecium DO]  ali follow..  13  233..............................................................................................................................................................GTTEKGKPLEGAVFALYQMIEGGKYYLDMA-NDLKNQWIKPADNDPLNDKNVSKFISDKE-------TTGQRFLPSGTYYFEELKGVE---EMDEASKRIEVIIPEFWVDAKGQPQYVVVNGQEMAELESGKVPVSAYESATPRVYNETVKETTDKPKEPSGPSNPG-------------------------------------QSGKWSVFPQTNEARTL--SLLGILLLLGAVLLIKKE 431
13 -11.900IDP04210 ZZZ_0017 [Escherichia coli O157:H7 str. EDL933]  ali follow..  11  2......................................................................................................................................................................INNVSSLFPTVNRNITAVYKKS-NPVKISSPFSPSSSSISATTLFRAPNAHSASFHRQSTAESSLHQQLPNVRQRLIQHLAEHGIKPARSMAEHIPPAPNWPAPPPPVQNEQSRPLPDVAQRLVQAEHGIQPARNMAEHIPPAPNWPAPPPPVQNEQSRPLPDVAQRLMEHGIQPARNMAEHIPPAPNWPAPPLPVQNEQSRPLPDVAQR....................... 227
14 -11.500IDP91577 gene: ECs4550; EspF protein [Escherichia coli O157:H7 str. Sakai] BAB37973 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  120......................................................................................................................................................................................................................................................................PARQAPPPPTSGQASGASRPLPPIAQALKEHLAAYEKSKGPEALGFKPARQAPPPPTSGQASGASRPLPPAQALKEHLAAYEKSKGPEALGFKPARQAPPPPTGPSGLPPLAQALKDHLA................. 240
15 -11.400IDP91727 gene: BCL2L11; bcl-2-like protein 11 isoform 1 [Homo sapiens] NP_619527 [Homo sapiens]  ali follow..  10  6........................................................................................................................................................................................................................................SDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAFNHYLSAMASMRQAEPADMRPEIGDE....................... 158
16 -11.100IDP91038 hypothetical protein SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3] SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3]  ali follow..  15  913.....................................................................................................................................................................................................KNPDTGKVIEEPVDDVIKHGPKTGTPETKTVEIPFETKREFNPKLQPGEERVKQEGQPGSKTITTPITVNPLTGEKVGEGQPTEEITKQPVDKGGEKPKDPKGPENPEKPSRP--THPSGPVNP--NNPGLSKDRAKPNGPVHSMDKNDKVKKSKIA--KESVANQEKKRAELPKTGLESTQKGLIFSSIIAGLMLLARRRK 1114
17 -10.900IDP91950 beta-N-acetylhexosaminidase [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100006639 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  12 1020.....................................................................................................NRNKQAELDTLVANLKAALQGLKPAATHSGSLDENEVAANVETRPELITRTEEIPFEVIKKENPNLPAGQENIITAGVKGERTHYISVLTENGKTTETVLDSQVTKEVINQVVEVGAPVTHKGDESGLAPTTEVKPRLDIQKEEIP-----TTVTRENPLLLKGKTQVITKGVNGHRSNFYSVSTSAD----KEVKTLVNSVVAQEAVTQIVEVGTMVTHVGDENGQAAIAEEKPKLEIPSQPAPSTAPAEESKALPQDPAPVVIEKKLPETGTHDSAGLVVAGLMTLAAYGLTKRKE 1311
18 -10.900IDP06506 gene: fms22; LPXTG family cell surface protein Fms22 [Enterococcus faecium DO] AFK59070 [Enterococcus faecium DO]  ali follow..  17  270...............................................................................................................................................................................................................................................................EKPDVTPEPDTDSGNQTVPETNPDTDNETENPEKPEVDPEEKPDVTPEPDTDARDQGIPEKINKKTIQEDGKKESKKSNLAILKINEEQSAQSAETLKSSKDTTFASPETKNKQLPKSGESQNKVILWSGIILLSIATMLSAKR 422
19 -10.800IDP05555 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo1413 [Listeria monocytogenes EGD-e]  ali follow..  17  346......................................................................................................................................................................................................................................................................................................................SKDDAVITPPVTPVNPDKPIINPVKPVNPATSTVPNKNISKKNTTKTVNQTGKTSTALQLPKTGDSENNLPLIIGVSLLISGVYITRRK 436
20 -10.800IDP91911 G5 domain family protein, partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100005012 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  16  833......................................................................................................................................................................................................................................................................DGKDGRDGRDGRDGKDGKCGCQDKPVTPSNDKPVPPAPNVPTPEVLVKPVPAQPTPNVPTPEVPVQPTPAVPTPEVPVPEQPVVPTPAQPATPVNAPTTGKENRGDKLPETGSQSDYISVLLGSGILLSLYVGRRKE 973
21 -10.700IDP91913 cell wall surface anchor family protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100006539 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  11  27..........................................................................................................................................DGSAITIPGVAQDPKAQDSTKPTAEKSTVKAPAQRVTHLTDEEKVKVAILQANGSALDGATINVAGDGTATIT--FPDGSVVTILGKDTVQQSAKGESVTQEATPEYKLETTPGGDKGGNTGSSDANANEGGGSQAGGSAHTGSQNSAQSQASKQLATEKESAKNAIEKAAKNKQDEIKGAPLSDKEKAELLARVEAEKQAALKEPKTTSAPQATAGTMQDVTYQSPAGKQLPNTGSASSAALASLGLVVTSGFALLGRKT 330
22 -10.500IDP05657 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0175 [Listeria monocytogenes EGD-e]  ali follow..  22  330...........................................................................................................................................................................................................................................................................................................................KKDTVTPTPITVNPVEPVKPVNPVVNKPVTV-KPANDNTNPSTSNSVEKTTYSSLPTTGDTDQSKSSTGALLLLISAPLLLFKK 414
23 -10.500IDP00754 gene: spa; immunoglobulin G binding protein A precursor SACOL0095 [Staphylococcus aureus subsp. aureus COL]  ali follow..  14  362...............................................................................................................................................................................................................................................................DGNKPGKEDNKKPGKEDGNKPGKEDNKKPEDGNKPGKEDGNKPGKE----DGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQELVVDKKQPANHADANKAQALPETGEENPIGTTVFGGLSLGAALLAGRRR 506
24 -10.300IDP06468 gene: A5L; A5L [Monkeypox virus Zaire-96-I-16] NP_536542 [Monkeypox virus Zaire-96-I-16]  ali follow..  11  2.........................................................................................................................................................................................................................DFFNKFSQGLAESSTPKSSIYYSEEKDPDTKKDEAIEIGLKSQESYYQRQLREQLARDNMMVASRQPTQPLQPTIHITPQPVPTPTPAPILLPSSTAPVRQQTNTSSDMSNLFDWLSADTDAPASTLLPALTPSNTVQDIISKFNKDQKMTTPPSTQPSQTLP................... 167
25 -9.950IDP05655 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0159 [Listeria monocytogenes EGD-e]  ali follow..  14  537..........................................................................................................................................KEGNTLQTDLKTDENGVLKVTDVPGSYQFVETSAPTGYKLDNSPVSFEVV-AGETDQVVKVTKENTLEVGSVELTKLDSATKATLAGATFELQDKEGNTLQTGLTTDENGVLKVTDLVPGTYQFVETKAPIGYELDTTPVSFEIVAGETDPIVKVTKENTLVPPTPVPPTPVPPTPVPPTPVPPTPLPPVPYEPTVPPT----KPEVPVTPKKTENSEDSPKTTPIRITQSLPKTGDTNSFAGLGVILIALSLSGLLLKRK 793
26 -9.850IDP91924 pneumococcal histidine triad protein B [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007441 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  17  418........................................................................................................................................................................................................................................DLLATVKYYVEHPNERPHSDNGFGNASDHVQRNKNGQADTNQTEKPNEEKPQTEKPEEETPREEKPEKPESPKPTEEPEEESPEESEEPQVETEKVEEKLREAEDLLGKIQDPIIKSNAKETLTGLKNNLLFGTQDNNTIMAEAEKLLALL................ 570
27 -9.440IDP91679 gene: vIRF-3; vIRF-3 [Human herpesvirus 8] HHV8GK18_gp64 [Human herpesvirus 8]  ali follow..  10  131......................................................................................................................................................................................SSLWEILYQHSVRLEKHRRRPRPFVGENSDSSEEDHPAFCDVPVTQTGAESEDSGDEGPSTRHSASGVQPVDDANADSPGSGDEGPSTRHSDSQPPPADETTVHTDNVEDDLTLLDKESACALMYHVGQEMDMLMRAMCDEDLFDLLGIPEDVIATSQPGGDTDASGVVTEGSIAASAVGAGVEDVYLAGALEAQN..................... 326
28 -9.340IDP06012 membrane-attack complex / perforin domain-containing protein [Toxoplasma gondii ME49] EEB00555 [Toxoplasma gondii ME49]  ali follow..  7  11.........................................................................................................................................................PTESRLQHIPFSTTRYLPIRSHVLQSTVERIESPEALNEVPTKVERNEFTEKGDKTEQVLTAQADHKSLLEGRSVRLESTSTAPDDDFDFLFEDDTPKKPKSRVNKGTSSDETSPGDRSSGEGSSDSDSLLSVVHRTKGNATQANKNQTRITHPKSKAQHQKKVTKKQGIPGSDSLGTSSADFDFDIDSSSNTQADDSQRQSLGDSSALDLFGSDT.............................. 226
29 -9.260IDP05488 putative LPXTG-motif cell wall anchor domain protein [Bacillus anthracis str. Ames] BA_4789 [Bacillus anthracis str. Ames]  ali follow..  11  149........................................................................................................................................................................................................................................................................................................................VKAVGGDNGVAATTKNNDQAKTDTQVKEEKTKVESKETAKEVNKETKNENGKAEKTDNPKTGDEARIGLFAA-LILISGVFLIRKVK 234
30 -9.180IDP05393 hypothetical protein BA_3225 [Bacillus anthracis str. Ames] BA_3225 [Bacillus anthracis str. Ames]  ali follow..  9  7.................................................................................................................................................................................................................VNSKGNEEHYNHQISMSSLYVQPKITK--ADEMSGLKISENWSCRFYPVGWDSPVNYTGFNPQTLPFSSGHPTHYAGMIPQGQPANTPFPGHTGFNFQKPPFPQPFNHTGMFAQGHLAALLSPPAKAFKFNINNGGIFGNSPGWGGQISPMGWGNNGGYGQPTVGKGTMNGIGMLSSLMMGKFFF..... 200
31 -9.130IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  12  371....................................................................................................................................NAQGTFTEEPQTVIYVYTKNSVAA---APVTVKYLNEEGKILTA-SDNLTGNVDDPYQTKAKEFAGYTLDESKLPTNASGVFKTNAQTVTYVYKTIPASIKAHDSTMNVGDTWSAKDNFDSAVDSLGVAVPFDEVKVDGSVDTTKAGVYPVTYSFAGDSVTIKVTVKATVVPAPPITPIKPVVPAPANPNTPSTQQTPT----------------QSGTLKIKATHQEQPIVAGNLKLPTTGDNLWDSVLYFGFITVCSFVLFFRLK 621
32 -9.040IDP00768 superantigen-like protein SACOL0470 [Staphylococcus aureus subsp. aureus COL]  ali follow..  7  2..........................................................................................................................................................................................................................KMRTIAKTSLALGLLTTGAITVTTQSVKAEKIQSTKVDKVPTLKAERLAMINITAGANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKTLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTPQPMQSTKSDTPQSPTIKQAQTD................... 163
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.