current user: public

If you have questions about the server, please let us know.

Query: IDP02418 fibronectin domain-containing lipoprotein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1279c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410
# Score Template Links and tools%idFirst MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKVESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKLEPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHPDFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKSGSSQVVSSTSKALPPQVEHLSASTDGSSKIILTWDAPTYEDFSYYKVYSTSSSFLPFSVLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILAQSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVIAIDSAGLRSEPSSKVKAAQLast
1 -105.000IDP02418 fibronectin domain-containing lipoprotein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1279c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali  100  1MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKVESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKLEPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHPDFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKSGSSQVVSSTSKALPPQVEHLSASTDGSSKIILTWDAPTYEDFSYYKVYSTSSSFLPFSVLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILAQSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVIAIDSAGLRSEPSSKVKAAQ 411
2 -78.700IDP06168 hypothetical protein jhp0683 [Helicobacter pylori J99] NP_223401 [Helicobacter pylori J99]  ali follow..  31  3.SWMKKKYFTLL-LQSSVVLAVFIGCSSTRNSNQENTDDKLPVVHSIKTINDVSSVGFEWSKVADTDIDGFVLYRLKKDSK-LKRIATIKNPYATHYYDEGLETESSYTYQLATYKGDKI-SKLSEPILVKTSF-INPVESVFASLEYPKSVKVFWSPHPNPSVSKYIIQRQNKDG-KFLNVGAVKNRLFVEFFDKDLEDGQKYRYQIIAENFMGDKSRPSVIVEGKTKDLPKEIANVRVSQNLTRQIELSWDKSPEEDVIAYRIYASNNRNDKYKFIAQTTNTSYVDKIEKDNLTRYYKVVAVDKTHLEGALPKEPAMGETSDRPEAPIITKGTIQDSSALIQWENNSPKIATYAVYRFEANSKLRFGNITQNQFVDKDMKVGVAYRYQVVSVDKDGLESHPSKEVRLF. 416
3 -46.100IDP05411 putative chitin binding protein [Bacillus anthracis str. Ames] BA_2793 [Bacillus anthracis str. Ames]  ali follow..  14  49..................................................SRSALCSPTYGALNVNGSVMYEP----------QSLEAPKGFPQGGPVDGQIASAGGKFGGILDQQTADRWFK-NTITGGENTFTWKYTAPHLTSKWHYYITKKGWNPNKALRADFEPIGTVQHDG--------SAASNHLTHKINVPTDRSGYHVILAVWDVADTANAFYNVIDVTDTEAPSIPNGIQAQKVTANSIELAWTASTDNGVKGYQIFRNG------EMIDTVPGTHFIDKKLQPSTEYSYTVKAIDAAGNASKESAKLTVKTDTEAPTQPKGLHSMTTTSSVDLMWSPSDDNVGHYDIYRETEGSMKKIATSNTTSYMDKNLLPNTTYKYVVKAVDVAGNESVQSDIFTIT. 401
4 -31.500IDP05700 hypothetical protein lmo2467 [Listeria monocytogenes EGD-e] lmo2467 [Listeria monocytogenes EGD-e]  ali follow..  15  114...............................................TSSWQYFITKKGWDPNKPTRSSLEPLATIEADG---------SVPNALAKQEINIPNDRSGYYLILGVWNIADTGNANSDITPVADTEAPTKPTNLAATTTTKTVSLAWNASTDNGIKGYEILRDGV---------VIGESQTASYEDTTVESNTAYTYTVRAKDFAGNKSTLSNSINVTTNEAPTAPKSLMSHGQTDTTIALCWQASTDNEVKNYEIYRNN------TKIATSTKTMFEDTKLASNTSYNYKVYAVDTSGNRSLVSNEITIKTKTLDPLNTAGDQVYYNGVAYTAKWWTKGNTPDTSDVWQTAST----DIQTWNVQKAYNGGDKVTYNGKTYQA-WVRGEKPDSSSIWTLLN 478
5 -23.500IDP95079 calcium-binding adhesion protein [Peptoclostridium difficile 630] YP_001089310 [Peptoclostridium difficile 630]  ali follow..  11  270.................LFSGENNGVTISSKNDEISEEKPAVMDIALSEALNMEVINIK-APEGTAPAKGIVEVTDKDGNKEYMKNLKDEEQQEEVNNEQEEVNQEEVNNKDENINQTDNNSNNENNDKQQENSDKQEANSNTNQDKNNDKENSSMDKPNSDEKEGDNISKDDNFTTSTYSRSALETYADIVINLGKQVAVKKITIKITATTANDRNNNVYKEIPKPEMNIPKINKILTSTAVGNEKVSFYWNNE--VNVSAYELILDKIDSKGKTKKLQTSKNTIEVRDIEAYGLYRVSIQSLNGDWSSSPDSILEFQVVPDTKPEPPEGINVKGKFKSLDVSWKNHK-QAKDFDLYYKEKGSNG-DKLIRGTSSKIEGLKDNTTYEVRMTATNHLG-TSGMSKTYIGT. 719
6 -16.700IDP04348 two component regulator [Clostridium perfringens ATCC 13124] CPF_2547 [Clostridium perfringens ATCC 13124]  ali follow..  65............EYMIMVQGRKEDSNKPFDYKVTEIKEEKLIKGIYLNKDVFNVGEKAELKVDSNNENIMYRYF---SGKNGWQLIKDYTLENKLNYTINE-----QFEFLIECKKTSSTNTTDDYATVIFTSKEFVKPEIINFINLSESELTFEVEANFEDERTALYKFVKISPDGSRTCIQDFSSSRIVTFKEFK-----RYKLLCLIRDMYSNKEFDDRAVMVYDIKPYEPLQDLSSPQEKGEVIEIKAVIDGGSDIL----YRFKIDGEISEDTGYTRNSTLKWNAKKEG-NYRITLWAKDESFIGDYEIESKLDYKIEKKVKKPIKITELIFDEVIKLRVSAEGGTDLKYSFLIIKDGKTIESIDFGSNNWVEFIPNEKGNYQLDVRVKDKYSTKEYDVHTVLNFK 493
7 -11.500IDP90198 gene: CPXV209; CPXV209 protein AAM13648.1 [Cowpox virus (Brighton Red)]  ali follow..  2............................................................................................................SIPPVIFLPIFFYSSFVQAFNAPEEPVILPCPQINTISSGYNILDILWEKRGADNDRIIPIDNGS------------------NMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYTQIVNERTTGEMIWSGHRRLRNKRLRQ---------------RTPGIITIEDVRKNDAGYYTCVLKYTYGDKTYDVTRIVKLEVRDRMIPPTMVSLRPPTTDADVFWISNGMYYEE-RISVANKIYTTDKRRVITSRLKINPVKEEDATTFTCMAFTIPSISK--TVTISIT. 326
8 -11.100IDP90145 IFN-alpha/beta-receptor-like secreted glycoprotein [Monkeypox virus] MPXV_ZAI1979_005_192 [Monkeypox virus]  ali follow..  1.....................................................................................MMKMKMMVRIYFVSLSLLLFHSYA--IDIENEITEFFNKMRDTLPAKDSKWLNPVTMNDMAALGEPFSAKCPPIEDSLLSHYVVKWERLEKNRRRQVSNKRVKHGDLWIANYTSKFSNRRYLCTVTTKNGDCVQGVVRSHVWKPSSCIPKTYELGTYDKYGIDNITW-------------YKDNKEINIDDFKYSQAGKELIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQPANITCSAVSTSVLIEWENPSGWIIGLDFGVYSILTSRGGITEATLYFENVT-EEYIGNTYTCRGHNYYFDKTL-TTTVVLE. 352
9 -9.930IDP05773 soluble interferon-alpha/beta receptor [Ectromelia virus] AAX23681 [Ectromelia virus]  ali follow..  22..............................................................................................SLLLFHSYAIDIENEITEFFNKMRDTLPAK---DSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLS---RYNDKDNVVNWEKIGKTRRPLNRRVKNGDLSNDSHRRYLCTVTTKNGDCVQGIRSHIRKPPSCIPETYELGTHDKYGIDLNITW-------------YKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDPKINVTIGEPAVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVT-EEYIGNTYTCRGHNYYFDKTL-TTTVVLE. 358
10 -9.640IDP91662 gene: CDH1; cadherin-1 preproprotein [Homo sapiens] NP_004351 [Homo sapiens]  ali follow..  242.......VEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDA-----DVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLESFPTYTLVVQAADLQGEGLSTTATAVITVTDTNDNPPIFNQVPENEANVVITTLKVTDADAPNYTILNDDGGQFVVTTNPVNNDGILKTAKGLDFEAKQQYILHVAVTNVVPTSTATVTVDVLDVNEAPIFVPPEKRVEVSEDSYTAQEPDTFMEQKITYRIWRDTANNPDTGAISTRAELDREDFEHVKNSTYTALIIATDNGSPVATGTGTLLLILSDVNDNAPTIFFCERNPKPQVIN-LPPNTSPFTAELTHGASANWTIQYNDPTQESIILKPKMALDYKINLKLMDNQNKDQVTTLEVSVC. 686
11 -9.590IDP05615 putative lipoprotein [Bacillus anthracis str. Ames] BA_5522 [Bacillus anthracis str. Ames]  ali follow..  10  13.........................................................................................................................................................................................................................................................................................................TVLISGCNKEVVKESPKDKVEQHKKNTPLKIDEVKINTVNGKTLMVDVKAKGEKLT-YAYYIYKGEEIVEKIWYKPENSLKYEVKEPGKYKVKAYAKDANKKISVYTNEVTIEK 126
12 -9.330IDP91037 gene: sdrD; Ser-Asp rich fibrinogen-binding, bone sialoprotein-binding protein [Staphylococcus aureus subsp. aureus Mu3] SAHV_0560 [Staphylococcus aureus subsp. aureus Mu3]  ali follow..  10  619.SYLIPNLPNG-DYRVEFSNLP-KGYEVTPSKQGNNEELDSNGLSSVITVNGKDNLSADWEDTNKNGISGVTVTLKDENG---NVLKTVTTDADGKYKFTDLDNGN---YKVEFTTPEGYTPTTVTSGSDIEKDSNGLTTTGVINGADNMTLDSGWQDSTEKGISGVTVTLKNENG---EVLQTTKTDKDGKYQFTGLENGT---YKVEFETPSGYTPTQVGSGTDEGIDSNGTSTTGVIKDKDNDTIDYVWQDKDEKGISGVTVTLKDENDKVLKTVTTDENGKYQFTDLNNGT---YKVEFETPSGYTPTSVTSGNDTEKDSNGLTTTGVIKDADNMTLDSGWDSTEKGIKDVKVILLNEKGEVIGTTKTDENYRFDNLDSGK---YKVIFEKPTGLTQTGTNTTEDD. 1094

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 5 6 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.