Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: IDP02460 gene: cheD; methyl-accepting chemotaxis protein [Yersinia pestis CO92] YPO1675 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .
# Score Template Links and tools%idFirst MFKRMKVVTSLLLVLVLFGALQLVSGGLFFKSLQNDQENFNVLQVIRQQQSVLNESWVYLLQTRNTLNRAGVRYMMDINHTGSGPTVKDLISSAKGTLSVAEDRFKRYEKIPQNSSQDPEGAKKLKQSYEEYFSALTELINLMETNKINEFFNHPTTSFQNEFEQNYNNYLTQNDGLYDSAVEDSNQSFSFAMGVVITVLVVVLVMMLLVWLGMQQILIHPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVLSVDNSNSTSDVRKVKQPTQEMNSTAKKALGNNLQDNWETFLast
1 -122.000IDP02460 gene: cheD; methyl-accepting chemotaxis protein [Yersinia pestis CO92] YPO1675 [Yersinia pestis CO92]  ali  100  1MFKRMKVVTSLLLVLVLFGALQLVSGGLFFKSLQNDQENFNVLQVIRQQQSVLNESWVYLLQTRNTLNRAGVRYMMDINHTGSGPTVKDLISSAKGTLSVAEDRFKRYEKIPQNSSQDPEGAKKLKQSYEEYFSALTELINLMETNKINEFFNHPTTSFQNEFEQNYNNYLTQNDGLYDSAVEDSNQSFSFAMGVVITVLVVVLVMMLLVWLGMQQILIHPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVLSVDNSNSTSDVRKVKQPTQEMNSTAKKALGNNLQDNWETF 557
2 -119.000IDP01089 gene: tsr; methyl-accepting chemotaxis protein I STM4533 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  68  1MLKRIKIVTSLLLVLALFGLLQLTSGGLFFNSLKNDKENFTVLQTIRQQQSALNATWVELLQTRNTLNRAGIRWMMDQSNIGSGATVAELMQGATNTLKLTEKNWEQYEALPRDPRQSEAAFLEIKRTYDIYHGALAELIQLLGAGKINEFFDQPTQSYQDAFEKQYMAYMQQNDRLYDIAVEDNNSSYNQAMWVLVSVLIAVLVVIIAVWFGIKLSLIAPMNRLIESIRHIASGDLVKRIDVEGSNEMGQLAENLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDIASSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVSRVDVGSTLVESAGETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNASLVEESAAAAAALEEQASRLTQAVAVFRIHQQQQRAREV----AAVKTPAAVSSPKAAVADGSDNWETF 553
3 -116.000IDP02090 gene: tcp; methyl-accepting transmembrane citrate/phenol chemoreceptor [Salmonella typhimurium LT2] STM3577 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  51  1.MKNIKVITGVIATLGIFSALLLVTGILFYSAVSSDRLNFQNASALSYQQQELGGSFQTLIETRVTINRVAIRMLKNQRDPASLDAMNTLLTNAGASLNEAEKHFNNYVNSEAIAGKDPALDAQAEASFKQMYDVLQQSIHYLKADNYAAYGNLDAQKAQDDMEQVYDQWLSQNAQLIKLASDQNQSSFTQMQWTLGIILLIVLIVLAFIWLGLQRVLLRPLQRIMAHIQTIADGDLTHEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSIYTGAGEISAGSSDLSSRTEQQASALEETAASMEQLTATVRQNTDNARQATGLAKTASETARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTQQNASLVEESAAAAAALEDQANELRQAVAAFRIQKQPRR---------EASPTTLSKGLTPQPAAEQANWESF 547
4 -113.000IDP01940 gene: trg; methyl-accepting chemotaxis protein III [Salmonella typhimurium LT2] STM1626 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  43  15FLHHIRLVPLFSSILGGILLLFALSAGLAGYFLLQADRDQRDVTDEIQVRMGLSNSANHLRTARINMIHAGA-----ASRIAEMDEMKANIAAAETRIKQSQDGFNAYMSRAVKTPADDALDNELNARYTAYINGLQPMLKFAKNGMIINHENEQAKQLDAAYNHVLLKAIELRTERARLLSEQAYQRTRLGMMFMIGAFTLALVLTLMTFMVLRRTVIQPLQQSASRIERIAAGDLTMADEPTGRSEIGRLSHHLQQMQHALQQTVGAVRQGAEEIYRGTSEITAGNTDLSSRTEQQAAAIEQTAASMEQLTATVKQNADNAHHASKLAEDASGKASRGGQMVSGVVQTMGNISTSSKKISEITAVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLIGASVSLIEQGSEEVIAAGSTMNEIVDAVKRVTDIMLDIAAASDEQSRGIVQVSQAISEMDRVTQQNASLVEEASAAARSLEEQAARLTQAVDAFRLHDTGATMRSSF............................. 540
5 -112.000IDP01047 putative methyl-accepting chemotaxis protein STM3152 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  39  3LLQNFTIRMVMLTILGLFCLLWSGVGLYSVHALSEVSEGNDIDRHLVRQMTVLSQGNDQYFRFVTRLSRAMD---------VKIGGGTPDFAPARQSLENMRQKLEEMKALSPGPMNPDISREVLSNWQALLEKGVVPQMQLAQQGSLTAWASTVTPALSRAFGASAERFSHEAGAMLDNTRVMVDGKTYTIRILLITAVILGIAILIFTDRYLVAMMVKPLERIRQQFQRIAQGDLSQPIEALGRNCVGRLVPLLRAMQDSLREAVSTIRAGSDNIWRGATEISTGNNDLSSRTEEQAAALEETAASMEQLTATVKMNAEHARQASQLADAASLTAGKGGELVSDVVETMNGISASSQQIAEITTVINSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAGAAKEIEALIGESVRRVAQGAQLVQETGATMDAILRGVTEVTTIMKQIASASEEQSKGISQVGVAITQMDSVTQQNAALVEQVSAAAAALERQTEDLQRSVQQFRLSASEPQQRV------TAKAAPGVQRMASAPAQSTDEWVSF 547
6 -108.000IDP02076 putative methyl-accepting chemotaxis protein [Salmonella typhimurium LT2] STM3216 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  31  3.LHNIKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQNIITNDYPTTVKANLLIDNFND-------FIIAQQLMLLDEEGRWSQSSQKELDEISQRITALLDELSSNR-HDAASQKIITEIREARQQYLESRFRILQDIQSHNAIQEMMTRTVQVQKVYKDKVQELIAVQDAQMHNAGVQVEGDFKTNRTLLITLALISIAAGCVMGWYIVRSITRPLDEAVRFAEAIADGDLTRHITTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTAAAQIVAGNQDLAARTEEQASSVEETAASMEQITATVKNTADHTSEATKLSAGAASVVKNNGEMMNQVTQKMRVINDTANRMSDIINIIDSIAFQTNILALNAAVEAARAGEHGRGFAVVAGEVRQLAQKSASSASEIRNLIEDSTSQTQEGMHLVEKASALINGMVDNVEEMDVILREIGQASREQTDGISQINSAIGLIDAATQQNSCLVEESVAAAASLNEQALHLKELVNVFRVREEDTQPA................................ 521
7 -95.200IDP02252 gene: tsr2; putative methyl-accepting chemotaxis protein [Yersinia pestis CO92] YPO1229 [Yersinia pestis CO92]  ali follow..  49  259......................................................................................................................................................................................SQATAGIHSLLTTSLVTLVIIIFISAGVIALITQRALTPLTHIQQAMDAISSGDLTQRLPIEGRDEVAQIARSFNQFADKLSLVMAQIRGTSESVRVAANEIAAGNQDLSGRTESAAASLQQTSAALEQISATVAQSASAARQANNAVFSASEDASRGGDVITKVITTMESIEKASGKIGDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRILAQRSAQAAKEIKALIESTVSSVASGSSQVRQASNAMTDIVSSVSDVTTIMSEITNAADEQMRGIHEINSAVAQLDTMVQQNAALVQESTAASAALQAQAADLTDTVNQFKI........................................ 595
8 -95.100IDP01957 putative methyl-accepting chemotaxis protein [Salmonella typhimurium LT2] STM1657 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  34  2.................................................................................................................................................................LRNISVRTCIILFMVCAFLLVDTLQIAFLHDLPILITCNIIYLISALLLWWYMTCYLVVPINTVKKSIEEVAAGNLSIHISEFGNNCAGRLIPGINSLSENISALVREIRSSSQTAMTLSEQLAARSLSLSVKTEQQSASLIQTAASIDEMAASTKNNADNTRMASIQADCATQCARKGGELMVRVTENMRSITDCASQMTEIISLIDGIAFQTNILALNAAVEAARAGDHGKGFSVVAGEVRNLAHRSAEAAKSIKALIDVTHDNVRQGAAIVQEAEKNMQEIVGGSGQLNVLMSEISTTTREQEKGINQITLALSDLESATHSNVLMVEALSASSDVLKAQVIELQTKTDKFRLSQPGYSEHALSHSHVSSLSTITRRGQA............. 384
9 -56.400IDP01485 hemolysin secretion protein HylB VCA0220 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  21  2IINKFSLKWMLAIAVAIPAIALLFVAFTSLNTMSVMQAQSNSLYANTAAPMRAMAEATRIPRMRVGIDMMLLQETALKDAKGVLKRVEEARTEDIPEMRQAMQVAVDSQVNPELKEQARKLQARFEQMVREELEPMLQAFANNDMTTAQNIYRDKYAPTYGEMRKQANQILDTLLQQAEQQNHASVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVINKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL........................................ 548
10 -54.500IDP04179 methyl-accepting chemotaxis protein [Vibrio cholerae O1 biovar eltor str. N16961] VCA0068 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  20  4LLSGLSIKLQVVVPVFFTLLLLIIGITFSTSSLKTAFHQVTVSTEQLITDKDNLTTLIDNTYAMRISAIYSLF---------RPAEVTALPNVLKEKQTENLALLRSLADNPELKNEVAGLTQAMQRYVDYSIQTMIPLLNIERFTAQYEQATAEYRKVGNEMIKAIDVLSNRLNQVAMTTIDESEHEHDSVMSQSTFALIGILLVAALSSWLLAGIIVTPIRQLQQTVREIAKGNLLVKAQEEGNNEITLLARDVNATVTQLRQTVESLVRISTDVASASTELATVMTQASVNSDQEKQEVEQVASAVNQLQSTAQSVTDHAHSADGAAQQANQLASQSLRMFEESHRATAKMADQSERIGNVTEVIRSISEQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQTSTQEIQAIIESSLSLLEQNQSLAAKVSASLTEINHSISALGQINAQVATASEEQSQVTKDINRNLSNIYELVSQNVTGITQSAAASHELSDLAEQQHQQLQYFRV........................................ 547
11 -53.700IDP91343 methyl-accepting chemotaxis protein [Vibrio vulnificus CMCP6] VV2_0072 [Vibrio vulnificus CMCP6]  ali follow..  28  174........................................................................................................................................................................................................GLGIWSLLLLSVAISYSSTRRLESLSAEARKVFDNPLMELVYNKKVDDISEIKLALKMRQSELNAVVGRIQDSNQQLIDSARNSSSNSDKASHNLKGQTHETEQVAAAITEMHSTANEIAQNAQSASDATDQAHSAASEGMITVQDTVKAIKQLAQHGKTIGDVLIIIQGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAQRSHESTEEIQKVIGEGTHLAEQCVSSADSSGQKLQILLDQVTDISDRNNQIATAVEEMARVTEDMSSSVQSISDACSATNVLSSDTCHQCNALVKSLDSQGKLVSQFR......................................... 517
12 -50.900IDP95280 methyl-accepting chemotaxis protein [Acinetobacter baumannii ATCC 17978] YP_001085820 [Acinetobacter baumannii ATCC 17978]  ali follow..  29  293.....................................................................................................................................................................................................................EYDRNQNAILRLLDEIADLADGDLRSYATV-SEDFTGAIADSINFAIDQLRDLVSRIHETSQEVARYTQDTQSITNQLAEASEHQAQEIAGASTAMNEMAQSIDQVSANASESAEVAQRSVQIASNGAQVVNRSIEGMDTIRESSQEIGNIVSLINDIADQTNILALNAAIQASMAGEAGRGFAVVADEVQRLAERSASATKQIETLVEQTTTEVVRGANLAKDAGIALDEIQKVSGDLAKLIASISDAAKLQSASASHIATTMTVVQEITSQTTTATFDTARSVSELANMAESLRESVTDFKLPD...................................... 625
13 -39.300IDP95064 methyl-accepting chemotaxis protein, partial [Campylobacter jejuni] AGM39603 [Campylobacter jejuni]  ali follow..  21  2....................................................................................................................................................................................................................................................GSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQAALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIANSINASLRNITESVDEITNVINLIKDVSDQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEKTQKATTEVEMNIEQVEKISIDSNAHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQLADHTSC............................................................ 282
14 -34.400IDP01046 putative methyl-accepting chemotaxis protein STM3138 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  19  1..........................................................................................................................................................................................................................................................................MFKKVLGLRHWNNNVVKIPPPAAESGANASDVVVDTPEPYETIDIIRNAIIKSCEQLNIEKERINELNEQNDKARSSLKSLVEFITEINTSLTQINACIKEIQKIANQTNLIAINSAIEAARVGDAGRGFSVISKEVKNLSEDVKHSSKSVSTLTDNQQPVIDNITTNINQIVESIGIVIDKSLSMKSVMQYISTVQFLNIVKVDHVIWKMEVYKLLLNKDIN.................................................................... 263
15 -27.400IDP91610 gene: ECs4554; EspB protein [Escherichia coli O157:H7 str. Sakai] BAB37977 [Escherichia coli O157:H7 str. Sakai]  ali follow..  13  31..........................................................................................................................................................................................................................................LSIDSSLLTDGKVDICKLMLEIQKLLGKMVTLLQDYQQKQLAQSYQIQQAVFESQNKAIEEKKAAAGILGSFAAMNNAAKGAGEIAEKASSASSKAAGAASEVANKASAMQKAMATTTKAASRASGVADDVAKASDFAEDLADAAEKTSRINKLLNSVDKLTNTTAFAVTSLAEGTKTLPTTISESVKSTHEVNEQRAKSLENFQGNLELYKQDVRRTQDDITTRLRDITSAVRDLLEVQNRMGQSGRLA......................................................................... 311
16 -21.500IDP92066 gene: GAPDH2; apicoplast glyceraldehyde-3-phosphate dehydrogenase 2 [Toxoplasma gondii] ABO93620 [Toxoplasma gondii]  ali follow..  12  200.....................................................................................................................................................................................................................................DAASSGTCSESSDAAFAPEFSDLRDLFFGACDAT---------VSPDDLPSVPEALEKLAGLESDVQARGDQLDEKEKVVAEYLVAAQEAAVRHEEASRAFEDAKR--NKKENLAAAAEKAALEAAAEYADLTTAAQLVTEEAEQESAKA------LADAVAAGDLRFAINQKIVNEAGPEARGKVPRALLAPKHVRISDPAAGRVLKIFFHNNFAPFEDLPCAALHADAHLCRQHPRCVVQVEQSGDEVLQRCLLDEAYLALLTKTPDFCAAAPAEAETGLGNSAAQATGTPVSPFAGAAPLEPMAAVTEGEIEAVALDLLQE.... 506
17 -13.900IDP04691 sensory box histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA5067 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  292.................................................................................................................................................................................AMASLQPVDEAVQMVQDYYIYIIAFVVVLIFLASFYYSKQIAKPLLKINDTTKKIAHLDFTEQIPITSKDEIGDLSKNINTLSNKLNSHIGQLEQDIEKE----RKLEKTRKEFISGVSHE---LKTPLSIMKSCISILKDGVAEHKKEYYFQAMERE-VDKMDTLILDMLE-LAKFESGTYKMKYIDTVMEAICEHLSVEIEKKELRVHKHIGP----FEVVANQGRIEQ--------IVNFITNAIRYTPNKEDIIENKGTHIEE--EQLDKIWDRFYRVDAARQRSQGGTG-LGLAISKNILELHDAEYGAENTEDGVLYLPKKA.................................................... 617
18 -13.600IDP04672 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA1482 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  268.................................................................................................................................................................................AIASLQPVNEAMLVLKDYYVYALIIVFLVIILLSFYYSKIIVKPLIKINRVTKKMANFDFSEKLPVTADDEIGGLSGSINTLSVNLKDRIDRLNVANTKLQQDIERERQ-----KTRKEFISGVSHELKTPLSVIRSFAEGIKDGVKDTTYYTDVILEETENMNRLIVEMLE-LAKLESGTYKLDSIGELIQQVYTKLLFSMEEKHLQVNIDVNSS---IFVKANRSRIEQ--------VVNLLSNAIRYTPEGEKIIENTGNPIPE--ESLEKIWDRFYRLDASRSRHTGGTG-LGLSIVKNILDLHHAEYGVYNTTNSVV.......................................................... 591
19 -13.300IDP04182 sensor histidine kinase [Vibrio cholerae O1 biovar eltor str. N16961] VCA0238 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  189.................................................................................................................................................................................TSRYEEAALDALSNVRSVITSLAVFGMVSGALLGVWLLRTLSKPLAELVKSTTALEQGRLDHRISISGPDELKTLARHFNYMAQSLEQAQQKERMSRQLI---EREVADRTQELAQALQT----LEKAKHQQKEFFANVSH--ELRSPATAILGEAQITLRSRHNSDDEYRQTLLRISESAEQLAFRIELLMLIRHDERLFHPAAVVRQASLLTHAQQVELCYTDCDKLLM--------IRILVDNALRYDPTQQPILVDQGIGIAE--ADLSVIFERYFRAENGKRYRPDGLG-IGLTLAQ--SIVKQLDGEIRIESVLEQG......................................................... 530
20 -12.900IDP04331 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2181 [Clostridium perfringens ATCC 13124]  ali follow..  9  162.................................................................................................................................................................................AITSFQAIEEASALIKDFYKYIILIVIVIGLILSYVFSNLISKPLVKLNKSAKKMSAMDFSEKCDIEREDEIGNLAKTLNFLSKNLSNALDDLKIKNKKLEEDIEKERELEKLRKDFIAGASHELKTPIGIISGYAEGIKDGIVDHKDQGVYLDIIIDEAEKMNKLVMDMLE-LSKLEAGKIDLHSLTELTEEVLVKNSVDINKNNLTVVKNYSPTEDLYVQGDDFK--------IEQVLTNFVTNAIKYSEPNNQIIENTGAHIPD--SDINKIWTQFYRGDTSRNRGSRSTG-LGLSIVKNLLQAHESEFGVMNTENGVK.......................................................... 490
21 -12.700IDP04543 sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] VC2453 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  178...................................................................................................................................................................................................AGLVLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAM---------------------AVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARLANMSHELRTPLNGVIG-MLKTLQTIEKSANNLLTIINILDFSKLEAGKLALEVNLQATSAHEKGLEITLIDPKIRGVVGDPLRIQQVLTNLVGNSIKFTERG------------NIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLQAFSQADASISRRYGGTGLGLV--TQKLVSHMG............................................ 495
22 -12.600IDP04484 gene: barA; two-component regulatory protein [Yersinia pestis CO92] YPO3381 [Yersinia pestis CO92]  ali follow..  13  179...................................................................................................................................................................................................STLLLLFCMCVAILFAYRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGHMLGELDILKNGINSMAMSLAAYHEEMQQNIDDLRETLEQMEIQNVELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPTQ---------DYLQTIQRSANNLLCIINVLDFSKLEADKLILEIILLAHTAHEKGLELTLINNDVDQVLGDAMRLQQIVTNLLGNAIKFTEEG------------NIDILVVVKAIASQQVTLMVEIHDTGIGISESQQAQLQAFRQADASTSRRHGGTGLGLV--TERLVKEMG............................................ 496
23 -12.500IDP04664 sensor histidine kinase/response regulator [Bacillus anthracis str. `Ames Ancestor`] GBAA0996 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  5..AKFSIRYKIMAGYLVIILFLLISFIMLNNQISNLQKSRNFIIDHDFKVLNLTNQVEKDLLTIENKAKGFIT-----------SNNANYLQSLNSAERDYEKHYHDLFSLLEDNPSQQEKLKEINGNITNWMNKEIHPLIANHNSNKIQEIDTTE---IQSLQSQLTDFRSTEEQLTKKRAAQLDTKNNKLELWLYSLLFLLSCISIIVSLYISNSITKTIKNVIQAIKSISSKEITERIHVNTHDEIKDLAHTTNHLLDEISK-----REWLQTEIAELILMYQGVSSIEMLGNKILSGIIQKTQTSCGAFYVREEYEETASFADQGFDIGKQSIKMGEGFIGQSA-ILRDIPEEFRYVTTGLLLVIPVLFEDEVIALEEKASELLRSSKYKSLANMSHELRTLATVIHSSGKDLLTLINDDLSKVEAGKLDVIFEATNISDMAASMHQNVEDSDTIPDLFYTDAKRIEQISNAF----KFTEKGSVSLHFDSIETSNLSHDMQSISKDWITISVKDTG.................................... 667
24 -12.400IDP04438 gene: cpxA; two component sensor kinase [Yersinia pestis CO92] YPO0073 [Yersinia pestis CO92]  ali follow..  14  151......................................................................................................................................................................................SPQSDFINLMFDRPLLLLIATMLISAPLLLWLAWSLAKPARKLKNAADDVARGNLKQHPELSGPQEFLATGASFNQMISSLDRMVVAQQR----ISDISHEL---------RTP---------LTRLQLATALMRRRHGEGKELERIEMEAQRL----DSMINDLLSRSQHKNELHREPIKADELWSDVLENAQFEAEQMGKTLVVTAPPGP--WPLFCNPAALDS--------LENIVRNALRYSHHHIAVVDDDGPGVSP--EDREQIFRPFYRTDEARDRASGGTG-LGLAIVE--TAVSQHRGWVKAEDSPLGGLR....................................................... 446
25 -12.400IDP04495 sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar eltor str. N16961] VC0622 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  392......................................................................................................................................................................................KEAFARVRQLEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVSAGDLDEMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNKELESNLLIIRKQNDELQLANKLKDEFLATTS---HELRTPL--HG--------IGIAEALISGANGPISAAHKYQLDIIISSGQRLATLVDLLDYHKMRYGALDIRLVLELSHHLLGKKTLRIVSEQPVWVSADPQRLEQVLYNLIGNAIKYTSEGK--VVDTGQGIPA--EQLEHIFEPLIQAGHDASRYRQGAG-LGLSISR---------QLIE-----HGTLYVSSQPMVGTTFSFTLPLASEEEIAQARLTELPHFQAPEVLDSELPEQSN...... 762
26 -12.200IDP04694 gene: yycG; sensory box histidine kinase YycG [Bacillus anthracis str. `Ames Ancestor`] GBAA5714 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  172.................................................................................................................................................................................VVASMEDVYKQMKDINQIFATGTVIALLVTAVLGILLAQTITRPISDMRRQAIEMAKGNYSRKVKVHSHDEIGQLALSFNNLSKKLQQARSSTESERRKLSSVLSHMTDG---IATDRKGDIILLNDPAEKMLNVSTALDQSVLEVLGIQEEFTLDHLYEEPDSVLLDFSTRSFSVIQKETGKANGLIAVLYDVT------------EQERIERERREFANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVIQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVL............................................. 503
27 -11.900IDP04012 gene: virJ; sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2355 [Clostridium perfringens ATCC 13124]  ali follow..  12  163......................................................................................................................................................................................SKEYLELRDLMSNIKFIVSITFLLILIFTYFLFERIINPLNYIKNSFKRIGDGDFKINLKVNSKDEIGDLACGVNKMANKIEEQIEKINEEKEKVLTLE----------KTRTEFFNNITHELKTPLTNISGYAQIMSEEDFHDNDFRKFALERINKESKRMHELIVSLIEISKNKSENVNLKTLIEDLCEDFKVKGDKQGICISNNLED----IEFMCREDEIRR--------IINLLDNAIKYSIKGSEIIENLSDEISS--EGVEKIFEPFYRENTKKSRELGGNG-LGLYICS--ELVKKYGGDISFNYSNGKV......................................................... 475
28 -11.800IDP04673 gene: resE; sensor histidine kinase ResE [Bacillus anthracis str. `Ames Ancestor`] GBAA1498 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  157................................................................................................................................................................................FVYESLQVPIQGMERTTDFIFLSAGIAIILTTFFAFFLSTRITAPLRKMREVAFEVSRGKFDAKAPMVSQDEIGELATALNQMGKQLKFNMNALQQEKEQLASILSSMADG---ITLNQEGEVVVINPPAEHFLQVWQEEKEIELSKKLPSELVELFHLVVESEQQQVVGINLQKGNYVVLMTPLYN--TKIRGA-----VAVLRDMTEERRLEKMRQDFANVSHELRTPMVMLQGYSEAILDDIVQTKEEINEFVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQIAKDKEVALTVDFKDSIEQYPFDADRMEQVL............................................. 486
29 -11.800IDP04132 putative two-component system sensor kinase [Yersinia pestis CO92] YPO2997 [Yersinia pestis CO92]  ali follow..  11  156.......................................................................................................................................................................................................IWMGVLGGLFFSTLLAWNLTRPMRQLRVGFERVAQGDLSVRLLRRRHDELTEVARDFDSMAERLQALVSAREQ----LHDVSHELRSPLARLQLAIGLAHQNPDNVDNALQRI-------EHESERLDKMIGELLALS--------RAENHSLADDDEYFDLQELVVVVNDARYEAQLPGVEIQLEVAAQSE-----YTVKGNAELMRR--------IENIVRNALRFSASGQQVKVTLSALDKRYQIQVNKLSSIFDPFVRVKSAMSGKGYGLGLAITH--KVILAHGGQVEARNGEQGGLV....................................................... 439
30 -11.800IDP95472 sensor histidine kinase [Listeria monocytogenes 10403S] YP_005962624 [Listeria monocytogenes 10403S]  ali follow..  13  156......................................................................................................................................................................................SGTEQVIGTINRYMFYTILLSITVALILSAILSKLQVNRINKLRAATKDVIQGNYNARLKENNFDEIGALAIDFNKMTQTLETSQEEIERQEKRIADVSHEMRTPLTTISGLTE----GLVNDIIPKSETDRCIALIDTEARRLTKLVNENLDYE----KIRSNKIKLQKTRFNGKEFLELIKEQLDYVASEKGNITVAIDKDMAIYADYDRLTQVFINIVKNSVQFTENGQITLTGTQDYKESVLT-----ITDTGIGMNT--EELEQIWERFYKADMSRTNTAFGESGIGLSIVK--QLIEYHDGSITVTSEPNKG......................................................... 461
31 -11.500IDP04165 sensor histidine kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC1521 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  309......................................................................................................................................................................................WPFLKAYVTNILEVGIITLFLLVISGLFVYRGSRDLFRPIERIHRVVKMVQLGKNQGQIGLDDKHELAQLAKQFDNMLDQLQQRNEEIVQAAHELEAKVQSRTASLQEKTAQLEHHIALLNQTRNKLEKLAALGELTAGIAHEINNILGNTELIRFELGADASRVEEEIDAILLQIERIRNITRSLLQYS-EITWQHVNPIIDESKTGSKKRDIEFVLKAHNSVEVNRHQLLQILVNLQMNAIHAMNGKGRIIEDQGCGIKP--ENLKRIFD-------TTKREGTGL---GLSVSQ--SLLSQSGGEIKVQSELGVG------------STFSI........................................ 660
32 -11.400IDP02181 two-component sensor/regulator [Yersinia pestis CO92] YPO0256 [Yersinia pestis CO92]  ali follow..  17  288........................................................................................................................................................................................AWEALKPALYQLPFALAILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNE-LAEAKRAAEQLTTISHEIRTGAVELLQNTPGQMRLAETAHQCSLSLLAIINNLLDFSRESGQMTLSLEKTALL--PLLDQAMLTIKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRGCGIDVQHQQTIFQPFMQTSDHE------------QGTGL----GLAIA------DNLAKMMGGHLTVFSEPGQG........................................................................................ 605
33 -11.400IDP04247 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_1402 [Clostridium perfringens ATCC 13124]  ali follow..  10  161......................................................................................................................................................................................NPKIGFKIFVYIMISLYIFIFTMSLILYSKLTSKTFTKPLDKLMNGVRKLSLGDYSTRINIEKNNEFEELGEAFNNMASKIEEEKKLKEKSEKLVRNIAHDLKTPLSSIIGYSNIIKNNPDIEKESLHKYISVIENNGERANE-----------------MIMELFE-FYTLQSSEFILQDLSEFLRNLIYIYLLEEKDFDFDFEISEDD----LYLEFDNKRLER--------IGNLIINSVKYNKKGTKFVSDDGIGLSE--EIKKHIFNPFVREEKSRNSKKGGSG-LGLTISK--EIVEKHGGTIYLSDGPLKGCN....................................................... 470
34 -11.400IDP04430 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA4921 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  171................................................................................................................................................................................................PILFVSLLLLAILLIGLLSYLVSRSVIKPIFVLKDATGKIKEGNLDFHIPVTSHDEIGQLNQGFEEMRKKLKESIEMQTQYEENISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLS--EGIEVNLQLHASPLYVTA----DCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVI-----VMDNGSGIES--DTLPYIFERFYRAEQSRNSSTGGSG-LGLAIAK--QIIEEHGGNIWAESELGEGTS....................................................... 471
35 -11.200IDP01908 gene: ssrA; sensor kinase [Salmonella typhimurium LT2] STM1392 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  287.........................................................................................................................................................................................NRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTL--------------------------------QVQYDNLENKVAERTQALNEAKKRAERANKRKSLTVISHELRTPMNGVLGAI-GLADTARNCTLSLLAIINLLDFSRIESGHFTLHMQTIQGPAQSKKLSLRTVGQHVPLYFHTDSIRLRQI-NLLGNAVKFTETGG--VSDSGKGIEI--QQQSQIFTAFYQADTNSQGTGIGLT-IASSLAKM-----MGGNLTLKSVPGVGT......................................................... 604
36 -11.200IDP04352 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA0584 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  179......................................................................................................................................................................................SFLENMLLKLMKQFLIISVLTIILTTISVFIFSRVITEPLIKMKRATEKMSKLNKPIQLGIKRNDELGSLAKTIEDLSSELTY-MKKERG--EFLASVAHELLTPLTYMKGYAK----VAKRDSLTKEEREEYLQIIEDETDSVTDLVQDLFMLVQLEQHQFVIKKQKVL-----RPFLERMVEKTKTTLTNKQMLHVYCKDDLEVCIDERRMEQVMLNLLHN-AYQHSLENTTITIRVLAETNSFT----SVQDEGEGIPE--GDIPHIFDRFYRVDKSRTRATGGKG-IGLAVAK--EIVELHNGSILVTSKLDVG......................................................... 477
37 -11.100IDP04007 sensor histidine kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC1319 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  133.............................................................................................................................................................................................QAIDRADNLLFVFMLGGFALYCMFLIWFLSRRLRELERVTHDFANGNLQARASTKSSKSVGKLNHSFNMMADKISHLILSNKALTNAI---AHDLRT-ESQLNAKQQQQVASIIEDTEEMETMVDELLYYAKLEHPESDIQSQYLEVN----QWLADFIDEQSHLDADPQLLTRALVNLNAEKYAGDRLLIEASTVDAKL-DNGPG--IEEQHWPHIFDA-----------TDSSRNKAQSGFGL----GLAI------VKQIMARHQGEVTLTKSPLGGA....................................................................................... 420
38 -11.000IDP06113 histidine kinase sensor protein [Helicobacter pylori J99] NP_222872 [Helicobacter pylori J99]  ali follow..  11  115...................................................................................................................................................................................DEHFVLYKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLRELRSQVKRFAQGDKSVSCKSKQKDEIGDLANEFDNCIQKINAMNESRVL----LRSIMHELRTPITKGKILSSKEELSCKRFSSIFDHLNMLI----EQFARIEQLASKNYGSNKEKFLMSDLIDKIEKMLLIDEDKKSPIHVSSSNYIIEADFELFNMIDNAIKYSDDKQVFLDFIGNNLVVSNKSKPLKEDFEKYLQSSNPSQAHGFGL----GMYI------IKNALEAMGLNLSYHYSNGRICFTIHDCVFNSFYDLEADNEELPPPRKFERGEGNEGNRKSQL.............................................. 440
39 -11.000IDP04347 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2345 [Clostridium perfringens ATCC 13124]  ali follow..  14  276......................................................................................................................................................................................SNATKVPLLFKVSAFLVSLFLFIIAECVLYIKFKNLSSRMDSLVLAMEKVEKGDIDVHIPLKDRDEITFIADNFNKMCEKLNDHIRKS---------------------------YLAELRQREAEIVALQNQINPH-------NTLESIRMKAICNGDKEVGKMLYSLAFLFRSQVKGNLIVSIDQEIKYCNKYL----ELFKFRYDEKFKFKIECEEDLYDKGIVKFTLQPLIENYFVHGIRLERDDNELKIYIYKHLEDIVVEVEKLDDINRRIRECDHSGKSGMLNVHERI................................................................................ 546
40 -10.900IDP01736 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA5503 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  154......................................................................................................................................................................................TGEKEVLTNVGWTFLMTSLCLVAAGIFFAIRLAKSLHKPIDQLRQMAHRLANGDYKSKIELNEYVEIAQLSASFNAMADGIELHIKQLKEEKEKLDRITHELKTGYVDLLKAKEDVKESLRYVAVESERLLSLVEELLKSSKGTSTFEISPTVVNIK--ELAEEAVSIVKPVVADFDKTKQIF---------LNVL--DNAIKYSDATQHDDGIGIDEGVLAEWNES-----------PEGKILPSSYGHGY----GLYI------CQEIMDK-GSMRIESSEEIGTTIFITFLLPRRMEDIKNLKAV................................................................... 475
41 -10.900IDP04515 putative sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2673 [Clostridium perfringens ATCC 13124]  ali follow..  10  276....................................................................................................................................................................................................NRYLWIIPIVLVIHFIVKFIRKYDGLDTVIKGIEKVKKGDTDIEIKDNDDRQIRELADDVNDLRLGYKELVEE-KLKTELISNVSHDLKTNYVNILQLNNIKEEERKEYIEILDKKSQTLKKLIDDLFEVSKMSSGKVELFKYNIDIIQLVYQCIAEVEDVYSE--------KEIEFKING-------------------CMVKIDPQRM-------SRVFQNLTTNALKYSLEKTRVYVEIKDLENYVEISFKNISSARGDESRNSTIEGSGL---GLAIAK--TIVELHNGKFR................................................................. 559
42 -10.900IDP04428 gene: phoR; sensory box histidine kinase PhoR [Bacillus anthracis str. `Ames Ancestor`] GBAA4832 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  152......................................................................................................................................................................................EPLKDVHQKTWGLLIIGFVIACLVVVFLGMKITGQYIRPIESVTKVAIELAKGNYKARAYESHSDETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSG---ILIDSRGYINLVNRSYKETFHVTEYLDRLYYESFHHTEIIELVEEIFMTEVKVRKQMLLPLGIFEVYGAPIIGTNHEWKGI-----VLVFHDITELKKLEQMRKDFANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIF............................................. 481
43 -10.800IDP04189 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0225 [Clostridium perfringens ATCC 13124]  ali follow..  12  163...................................................................................................................................................................................LINTEAYEILRNTLTIFIISGLIAIVIAIFLINTFAKELVSPLMILKQKSKNISEGKFKEELHITSGDEVEDLANTFNIMSENLDKYINEIKSAKLHFDNVSHEFKTGFSEILNDKEKIVQSSALIEKEGKRLLNLVEEILLLAKNKNTFEIEYTYIDVK--SLIEDCLKILK-IYGDHDKTKQVF---------INII--DNAIKYSGCE--------------TLSISTKRSPNKMEVIIEDDGTGFIIKDEYVNPKGNGLG--IKICKDIMQS-YGFNIESELDVGTKVTLSFSIGKNNEIKEEDF..................................................................... 474
44 -10.600IDP04667 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA1313 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  152......................................................................................................................................................................................KSIKDLIYDMGLILAPLALAITLLTIWIGRKIIIAITRPLSQMERVANHLATGDFSERITISSEDEIGRLGKAFNKMANSLETEDVKRK---EFLANVSHELRTPLSYIKGYSE----AILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLQKQPIV-----SQLIEDVLDTYEIKFIEKKIISTNLNPEIIVMIDEDRMQQVLHNVLDN-AIRYTNQNGDIMITLRQIDDYCE-----IKDTGIGIDT--EHLENLGERFYRVDKARSRQHGGTG-LGLAIVR--QIVHIHDGQWQIESEKGNG......................................................... 450
45 -10.600IDP04104 gene: rstB; two-component regulatory system, sensor kinase protein [Yersinia pestis CO92] YPO2309 [Yersinia pestis CO92]  ali follow..  15  130....................................................................................................................................................................................................LALLILIGLSLALPVFLWMRPHWKDLLKLENAAQRLGSGHLDERTHFDPTSSLSRLGVAFNQMADNINTLIVSKKLLIDGIATPLVRLRYRLAMSDNLTESEQQALHHDIGQLEALIDELLTYARLDRPQVSLNLEPIDLP----AWLTTKIMDIRSIHQERE------------------IELDIPHRGDFGAVDLRLMERVLDNLVNNALRYSHQRLRIGLWFDGDNACLQ-----VEDDGPGIPP--EERTRIFEPFVRLDPSRDRATGGCG-LGLAIVHSIALAYQGSISVNTSPLGGASFR....................................................... 409
46 -10.400IDP04158 sensor histidine kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC1088 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  139....................................................................................................................................................................................DLSYLEQQLAHARKWTLLIVLGEMGLVALFSYLLGNALTRRLTELKTATDQITFGNREVLLEIQGHDEISRVAHSFQQMVQSL-------RHSEATMRDYQHQLEQWNLELEDKVNQRTETLLAKNQQLEEMNTKLTLMKDKLVETEKMIS-AAGFAHEINNPNGALKSHLQLLQQDFNQLKVGFEQID------ILLSGSDFHGKFTQTKNALYLEESFSGIEESLRDALHCVDRIKTIV-DKVQRCQAEPALHDSSWVSPLSLVEQAIQICGLREWVVWK--EQTLYPPLIYCYSNDFVTALSANAAYASDDPMIRIELSLRHDHQQLEIEV........................................... 464
47 -10.300IDP04662 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA0650 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  148......................................................................................................................................................................................ESIEKLVNGLTKQFIIAGAITFLLTVITIFLLSRLLTKPLLHMKHATEKMSKGDLSVSLTTTRNDEIGELSSSIQTLANDLHY-MKTERS--EFLASVAHELRTPLTYVRGYAD----IALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLAQMEQHNFSIQVKEVH-----HTFLTRISEKVNAMYKERYIVSFSCPPTLLVNLDEQRFEQVVVNILNN-AYRHSKEHSQIHISVIEENKRIS----TMEDEGEGIPP--EDLPHIFERFYRVDKARSRATGGTG-LGLSIVK--EIVELHGGNITVTSEVDHG......................................................... 446
48 -10.300IDP04542 putative two-component system sensor protein [Yersinia pestis CO92] YPO2000 [Yersinia pestis CO92]  ali follow..  11  153......................................................................................................................................................................................TPYMGTLNEFTRTLIVITAIGVLFVALLGFVIARIGMRPVNKLSEQAQHLAPGNHGQRLDTLTPDELQKLAVAFNGVLERQEIAWRQLES----NADVAHELRTPLTNLMGQTQLGLSR----KRETHELEDLLESNLEELERMTSIVNDMLFLSHAQ-----------AGEHATQLTDVSLREETYKTTEYVEPSFAEKNLSIHVEGD-----ITARIDRRLFHR--------LANLLENSARHAVTGTTVVANIGAPIAA--EHLNRLFERFYRVDSSRARSDTHHG-LGLSIVR--AVAIMHRGDVFASSQNGIN......................................................... 450
49 -10.300IDP04191 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0554 [Clostridium perfringens ATCC 13124]  ali follow..  12  291......................................................................................................................................................................................DFINADIQSLRKEMTIIGLLFTLVVLIFSYFLYSSIKVPLYNLLNKMKRVSEGDLKVLVNDTYEDEIGVISDNFDSMLKRVNELIEKTKL---------QEVEKRDLEIRMQAQINPHFLFNTLNSLKWT-ALMNQDYTVSEGLSSLAELLRNTIIDKNELVT--------IREELENIKNYVVI-NSFDVQYEVFILQPIVENS---------------IHGIDENKENQKIIIKIMSEEENILIS-----IKDNGKGFNS------------KEKVKDNKLSGIGWNNVDERI................................................................................ 553
50 -10.200IDP92003 sensor histidine kinase [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002775 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  12  39...................................................................................................................................................................................................LLGMTIVASLVGAGISLFLLLPVFTSLGKLKEHAKRVAAKDFPSNLEVQGPVEFQQLGQTFNEMSHDLQVSFDSLEESEREIAQLSHDIKTPITSIQATVE----GILDGIIKESEQAHYLATIGRQTERLNKLVEELNFLT------LNTARNQVETTSKDSIFLDKLLECMSEFQFLIEQERRDVHLQVIPE-------ARIEGDYAKLSR--------LVNLVDNAFKYSAPGTKLVTDEGQGIAP--EDLENIFKRLYRVETSRNMKTGGHG-LGLAIAR--ELAHQLGGEITVSSQYGLG......................................................... 334
51 -10.200IDP04659 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA0272 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  9  184.......................................................................................................................................................................................IPDGVVMYDTQEGPFPFLIGVLVFIFSFFYITKRKMKQIEAMAEGVKEIEKGNLAYRIEKKGEDEIASLTENINNMAEELMNNIEKERKLNELITNVSHDLRTPLTSIMGYLRLLRDSKYENKEQHDEYTRIAFAKSEQLKN-----------------LIEDLFE-YTKLTNEQVVLVCVNELLEQLIEELVPQAEEHGLTFVKKFPEER--AYAAIDSEKMVR--------FDNLLMNAIKYSKDDGEIKVSLQRQRWEIQIVIAELASLFERFYKKDQSRSRVTEGSGLGLAIAKSIVELQGGSIRAEY.............................................................. 485
52 -10.000IDP04241 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_1112 [Clostridium perfringens ATCC 13124]  ali follow..  11  274......................................................................................................................................................................................KKITEELIPIIGSTLLIVIFCLIVVVILINILSKALSRRILLLKDKAEDVSKGNFNNPIFTEDTDEIGIVTNSFGHMTRDLNDMINKVYK---------IELEKKATELKAQAMINPHFLYNSLSTIKWK-AIREGNDDISDITGYLAKFYRTSLNNGQDITD--------VKSEIDNIKSYIEI-YSFDVEYRIFILQPIVENA---------------KHGIDCNQGKERGKIIVEFQEDEDSL-----KIYNSSNNNDI-----NSIEEMLNK-----PGKGYGIYNVKERI................................................................................ 540
53 -10.000IDP04550 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0460 [Clostridium perfringens ATCC 13124]  ali follow..  12  446....................................................................................................................................................................................................IFGVVIYSGILFYFGRKYIDKWKKDYNKILEKTKEISNGNLDSKDDE-DCGFFNPMRDELNNIQKGFKAAVDE-RMKTELISNVSHDLKTAYVDL--KGEEDEEKRKAYLETLERKSQRLKHLIEDLFEVSKATTGNINLNIMDVDISYLMKQVVLELDDKINE--------AGLDMRLSLPEEKVILPL---GQR--------------------TYRVFENLIINVVKYALPNSRVYIDIKEGRENVDVIIKNISEISDRFVRGDKSRNTEGSGLGLAIVK---------SFVE-LQGGKFHIEVDGDLFKAIISF........................................... 740
54 -9.930IDP04272 lantibiotic biosynthesis sensor histidine kinase, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA3899 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  153...................................................................................................................................................................................................IVLFILLFVAEVIFLSRSFGKSLSKEMMILRKVTDKIQKEDLDFQVEQSKIKEVNEVLTSLVKMKDELNHSLRTQTNRREQIAALAHDIKTGNAELDSNQKKCNEHILKSIDEMEIYMKSLFMQTDLRDFIHNIIEESAICVLGKQNLIENVQDIPNFIPIDETALKRAI---------MNIMM-NAIEYSPTKGDSGRGFTATEQFYRGDKSRNAKDHHGMGLYIAKSFAKQHGGNLYLSNSGAKVVLEISA............................................................................................................. 453
55 -9.800IDP95462 sensor histidine kinase [Staphylococcus aureus subsp. aureus USA300_FPR3757] YP_494944 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali follow..  13  153......................................................................................................................................................................................PDIGETFSEFRTFLAVLLMLLLFISISLVIASTYSIIRPVKKLKLATERLIDGDFETPIKQTRKDEIGTLQYHFNKMRESLQNVSHEIKTPLTHIHHLLSELQQTSDK--TLRQQYINDIYTITTQLSGLTTELLLLSELDNHQHLLFDDKIQVN----QLIKDIIRHEQNFLGNQRLLHQAL---------SNLLI-NAIKYTDVGGASNDGSPISPQAEARLFER--------------KVSKHDNSNGL----GLAI------TKSIIELHHGTIQFTQSNEYV........................................................................................ 445
56 -9.740IDP04302 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_2503 [Clostridium perfringens ATCC 13124]  ali follow..  13  153...................................................................................................................................................................................SSLRNVDNFILNFFLVFLVIGLTVLAIGIILSYFLANSIVNPITELIKVSEQMAKGNLKVRNKIVTNDEIEKLADSLNIMAEEIEN-REILKN--EFISSVSHEL---------RTP---------LTSIKGWAITLNNDFTDRETLKMGFDIIEKEADRLSNMVEELLD-FSKFVSGKIKLINLKEFIEYLRLYMNPRAEREHKELI---KGITEDFIIVGDKDRLKQ--------FINIIDNAFKFTHENEKIIIDTGCGISK--EELPRVKEKFYKGKNSKSQNGIGLSICDEIIA-----LHEGTLEIYSELGKGTKV........................................................ 454
57 -9.680IDP02394 gene: phoQ; sensor protein PhoQ [Yersinia pestis CO92] YPO1633 [Yersinia pestis CO92]  ali follow..  11  174.................................................................................................................................................................................VVDTIPQELQRTDLVWNWFSYVLLANLLLVIPLLWLAAYWSLRPIKALASQISQLEKGERE-QLDENPPRELQSLVRNLNILLMNERQRYTKYRT---TLADLTHSLKTPLAVLQTTLREVEPIMLEQISRISQQIGYYLHRASMRSEHNVLGREIHSVP----ALLDSLYSALNKVYQRKNDFMEVMG---------NVL--NACVTTLHSEDDGPG--IPENKRQLIFQRTLRPGQGLGLSIAAEIIEQYQGKISITESGARMM.................................................................................................................. 472
58 -9.670IDP04076 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA2213 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  142...................................................................................................................................................................................ERLDSLQENLNMLKNVLVIASLLVLIPSFFAGRMLSKFILKPVNSLIQTMEHIQVRGIFKKIPLKSKDELHKMGSTFNKMIDLLHQNFEKQQQ----VSDASHELRTSYAKLLKRQDVLEESVEAIYSEAVRMKGMTNQMLLLANSSADWSLETNESDLV--RLCQVTAEQLE-VNIDEQKIKQVLVVLNAMKYSKD-IIVGIQKEKVFFSIQDYGMGIPKEDIQKVFDR-----------VDKARSRETGGTGL----GLSI------AKQIIDAHEGDIQLESEEGKW........................................................................................ 441
59 -9.580IDP04397 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA3230 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  9  141......................................................................................................................................................................................SRLSSTMNTLIVLTLISFPLLILIAAVGGYFITQRAFRPVQQMSDSASKIGDGDLSKRINLKGKDEMYHLAQTFDKMFERLETSFESEKQ----TSDASHELRTPTSVIISQCE-----ALSQRNNPKEMEESLEVILKQSRKMSALISQLLLLARADQGNDNTF----------QFECINMSELTEIVVEELSLMVQEASIDITTHIEED---LFIKADQTLMMR--------LMNLLTNAIAYSKANGTVVSDNGIGISE--QHITKIWDRFYRVDAARTSSNIGNTGLGLSMVK--WIVELHGGEITVESGLGEG......................................................... 444
60 -9.540IDP04343 two-component system sensor kinase [Yersinia pestis CO92] YPO2916 [Yersinia pestis CO92]  ali follow..  9  18.....SLRQLVLMAFLLVLLPLLVLAYQAYQSLDHLSTQAADINRTTLADARRSEAMTSVALEMERSYRQYCVL-----------DDATLATLYQHQRKQYTQMLVAHAPILPDARYYQTLQGLLNQLTDIK--------------CKNSGPDKEASILLEQFSRSNAEMVQATRDVIFSRGQQLQKDIAERGQFFGWQSLLLFLVSVLLVVLFTRMIIGPVKGIERMINRLGEGSLGNTALFKGPRELRSLAQRIIWLSERLAWL----SQRHEFLRHISHELKTPLASMREGTE-ADEVAGPLTQDQQEVVAILDHSSRH---------------------LQQLIEQLLDYNRKLAEHVDLAEMVGNVISAHSLPARAKMIRTETELDA----RICWAEPTLLMR--------LDNLYSNAVHYGEESGTIWICSRQVNDRVQIDVSEEIMIFEPFFQGSHQRKGAVKGSGLGLSIAQDCIRRMQGDLQLVTVDYAA......................................................... 469
61 -9.450IDP04419 sensor histidine kinase SrrB, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA2861 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  151......................................................................................................................................................................................AHSNEIIKTLNSFYLFILVITIFLIIVLVWILSKTITTPLKELSDVAEDISRLQFK-KTKVKTNDEIGDLATSINIMSEKLQEAHQDLTDRNEHLKRFMGDVTH--------------ELKTPIALVKAYSMGIKDGLDDGTYIDTIIKQSDHIS----NLIEELLR-FSKLERDVLQKESIKSLVQSILDKHKIELESKEINLQVNYNVGD--AIVYADVNKMRM--------FQNLISNAIKYTSNQN--IQNGMNAEHM--KDIDKIWEPFYVLESSRSKDRSGTG-LGLAIVK--SIVERHGFDYGVVTIGGEI......................................................... 449
62 -9.440IDP04692 sensor histidine kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA5105 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  61...................................................................................................................................................................................................INFFLIFFIPLSIIFFFFLTKPYLKYFSEISNGIHHLANGNFTNRVQVSSNDEFGDIAREINVASEKLKEAVERGDFAESSVVNLAHDLRTPLTSVLGYLDLILKDENLTKEQIKHFSTIAYTKSQRLES-----------------LIDELFE-ITRMNYGMLQLIDISELLIQLDEELYPLLEKHHLEARLNVDPH---LPINGDGKLLAR--------FENLLTNAVRYGYDGQFVDLNGYIDNEEVVVQVEDLPYLFDMFYTGDKSRTENRGGTGLGLFIAKNIVEQHNGTISAESNVVRT......................................................... 354
63 -9.370IDP04358 gene: creC; putative histidine kinase sensor [Yersinia pestis CO92] YPO0895 [Yersinia pestis CO92]  ali follow..  14  171......................................................................................................................................................................................LSMVPVIKRSERKILFAGGLLLGIALLIGLGFVWWINRAIGKLVDYAERVAEGQAV-ALPAMGSSELNDLALALESMRLKL----DGKAYIEQYVHTLTHE------------------LKSPLAAISGAAELLRESPPPETAQRFLINIEQQSAR-----IQQLVDKMLVQARLESRVLEISHILKQSFSAKEAQAVSRGVTLRLKSVDN---AMLIGDGLLLSQ--------LNNLIDNALDFTPAGGEIVEDSGSGIPG--YAQEKIFDRFYSLPRANSVKSTGL-----GLNFVREVAAIHQGSICLENRLPQG......................................................... 463
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.