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Query: IDP02562 putative CuZn superoxide dismutase [Salmonella typhimurium LT2] STM0924 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNKKLMTLAVFLFSSAASAASTDATVNLVNANGTGQKIGNITITETEYGLLFTPHLSSLPAGIHGFHIHENGSCDAGMKDGKPVAALAAGGHLDPQHTNKHLGPYNPEGHLGDLPALYVNQAGNADYPVLAPRLKSISQVKGHAIMIHTGGDNHEDHPNPLGGGGARIACGVIKLast
1 -102.000IDP02562 putative CuZn superoxide dismutase [Salmonella typhimurium LT2] STM0924 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MNKKLMTLAVFLFSSAASAASTDATVNLVNANGTGQKIGNITITETEYGLLFTPHLSSLPAGIHGFHIHENGSCDAGMKDGKPVAALAAGGHLDPQHTNKHLGPYNPEGHLGDLPALYVNQAGNADYPVLAPRLKSISQVKGHAIMIHTGGDNHEDHPNPLGGGGARIACGVIK 174
2 -79.200IDP02677 gene: sodC; superoxide dismuate (Cu-Zn) precusor [Francisella tularensis subsp. tularensis SCHU S4] FTT0879 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  45  1MTAFYKLCGMSMLSLVLADDHDGELIVHMKDVNTHKEVGTITISPNQEGMLITPHLYNLPANTHGMHIHINPSCEDNGI--------AAGGHWDPDNTQKHLGPYNDNGHKGDLPVLVVNADGTATEPVVAPKLNSLEELAGHSLMLHAGGDNYSDKPQPLGGGGARMWCGVI. 183
3 -75.400IDP05490 gene: sodC; superoxide dismutase, Cu-Zn [Bacillus anthracis str. Ames] BA_5139 [Bacillus anthracis str. Ames]  ali follow..  28  1MKKRLFFSCCLLFLMAGCDQGKPKEIDVKLHNASGDEVGTAKVTQQTSGVKITIKGEGFAPGPHGLHVHEIGECKAP-------RFESAGNHFNPDDKK-HGLLNPKGAENGDLPNVIADGSGKIKAEIDAPHITTIHRKDGASIIITENADDGM--TQPTGKSGDRIACGVIV 170
4 -53.600IDP06421 gene: A46R; A46R [Monkeypox virus Zaire-96-I-16] NP_536583 [Monkeypox virus Zaire-96-I-16]  ali follow..  15  7................................DHDNIRGVIYVEQVHGKDKVLGSVIGLKSGTYSLIIHRYGDISRGCDSIGS--------------------------PEIFIGNIFVNRYGVAYVYLDTD--VNISTIIGKALSISKNDQRLACGNEKIIHFLTINENGV.. 125
5 -10.300IDP05463 spore coat-associated protein [Bacillus anthracis str. Ames] BA_1288 [Bacillus anthracis str. Ames]  ali follow..  17  4KKKLGMGIASAVLGAALVGGGTFAFFSDKEVSNNTFATGTLDLALNPSTVV---NVSNLKPGDTVFKLENKGTLD................................................................................................... 78
6 -9.920IDP05159 gene: calY; camelysin [Bacillus anthracis str. Ames] BA_1290 [Bacillus anthracis str. Ames]  ali follow..  18  1MKKLGMGVASAALGLSLIGGGTFAYFSDKEVSNNTFAAGTLDLTLDPKTLV---DIKDLKPGDSVFLLKNSGSLT................................................................................................... 78
7 -7.020IDP05207 putative sulfonate ABC transporter,solute-binding lipoprotein [Clostridium difficile 630] CD2365 [Peptoclostridium difficile 630]  ali follow..  13  3LSKKIQALILFGVMGTSILTGCSSKPKEKEEAKTGKDDYTITVGYYNCDHMTAGPV-AESAGDLGLNVKTVGNGKVPEAMAAGKMDAGYIGTKGLVGAIPKGS---------PITIAANNHTGGSEYLIVSKDIKEPKDLIGKKIATDMSD....................... 146
8 -6.880IDP05615 putative lipoprotein [Bacillus anthracis str. Ames] BA_5522 [Bacillus anthracis str. Ames]  ali follow..  9  1MFKKVFVPLFAATVLISGCNKEVVKESPKDKVEQHKKNTPLKIDENGKTLMVDVKAKG-EKLTYAYYIYKGEEIVEKIWYKPENSL-----------------------------KYEVKEPGKYKVKAYAKDANKKIDSV-NEVTIEK......................... 126
9 -6.870IDP06529 gene: acm; collagen-binding MSCRAMM Acm (Fms8) [Enterococcus faecium DO] AFK59905 [Enterococcus faecium DO]  ali follow..  14  1MKKCRNIILSMLFIITNITSLIPVHVYADAGRDISSNVTSLTVDPTTDGGNIKVKFS-----------------------------------FDEKKQN----------QPGDYLWINWPSEGNIRGEGFQKEIPGTLTVRKDSAQV---NENIKNLDSVEGW........... 128
10 -6.770IDP93852 lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005559 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  8  1MKAIFAVCAVMMALLLTGCAKPVSQDYSAFKQSKPKSILVLLPQNQSPEVEASHGMLSQ---EAGYYVLPVAVVEETFKQNG-----TNAADISAVSPAKLHKIFGADA-YITIVQYGTSYQILTSDTRVTANAKLVDLKTGKLLWSGSATASSDEGNNSSGGIIGMLVQAAVS 174
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.