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Query: IDP02569 gene: inlE; internalin E [Listeria monocytogenes EGD-e] lmo0264 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKRNKTALRILVTLAVVLAITFWVGMSSKEVQAAVIEHPTPINEIFTDPVLTDNVKTLLGKADVTDEVTQTDLDSVTHLSAKSAGITTIEGLQYLTNLSELELIDNQVTDLNPLTNLTKITELRLSGNPLKDVSALAGLKNLKTMDLIYTDITDVTPLAGLSNLQVLNLDINQITDITPLAGLSNLQFLSFGSTQVSDLTPLANLSKLTTLNAMNSKVSDVSPLTGLSNLTEVYLEENQISDVSPLAKLPNLSIVTLTNQTITNQPVFYQNKPIVPNVVTGLSGELIAPDTISDNGTYTSPNLTWDLNSFINSVSYTFNQSVTFKNTTAPFSGTVTQPLTEVYAVVFDVDGEQTSAMVGVNELINEPTAPAKEGYIFDGWYDAKTDGNKWDFGIDKMPASDITLYAKFTENEEPNASSPINVEPNDNNSDNAEPNASSSNNVQENGTNEGINNLNSSGEDKVNIKLPITGDKLNVLPIFVGAVLIGIGLVLFRKKRQTKLast
1 -80.800IDP02569 gene: inlE; internalin E [Listeria monocytogenes EGD-e] lmo0264 [Listeria monocytogenes EGD-e]  ali  100  1MKRNKTALRILVTLAVVLAITFWVGMSSKEVQAAVIEHPTPINEIFTDPVLTDNVKTLLGKADVTDEVTQTDLDSVTHLSAKSAGITTIEGLQYLTNLSELELIDNQVTDLNPLTNLTKITELRLSGNPLKDVSALAGLKNLKTMDLIYTDITDVTPLAGLSNLQVLNLDINQITDITPLAGLSNLQFLSFGSTQVSDLTPLANLSKLTTLNAMNSKVSDVSPLTGLSNLTEVYLEENQISDVSPLAKLPNLSIVTLTNQTITNQPVFYQNKPIVPNVVTGLSGELIAPDTISDNGTYTSPNLTWDLNSFINSVSYTFNQSVTFKNTTAPFSGTVTQPLTEVYAVVFDVDGEQTSAMVGVNELINEPTAPAKEGYIFDGWYDAKTDGNKWDFGIDKMPASDITLYAKFTENEEPNASSPINVEPNDNNSDNAEPNASSSNNVQENGTNEGINNLNSSGEDKVNIKLPITGDKLNVLPIFVGAVLIGIGLVLFRKKRQTK 499
2 -60.500IDP05423 gene: inlH; internalin H [Listeria monocytogenes EGD-e] lmo0263 [Listeria monocytogenes EGD-e]  ali follow..  44  3.KRWNSVFKLVLMVTAILGLSLVTTSQGVEVRAESITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYQNNLVVPNVVKGPSGAPIAPATISDNGTYNNVSYTFNQSVTFKNTTVPFSGTVTQPLTEAYTAVFDVDGKQTSVTVGANELIKEPTAPTKEGYTFTGWYDAKTGGTKWDFATDKMPAEDITLYAQFTINSYTATFDIDGKLTTQKVTYQSLLEEPVAPTKDGTKNDNPNPDDPTTNTPTGNGDGTSNPSNSGGNTTLPTAGDENTMLPIFIGVFLLGTATLILRKTIKVK 548
3 -56.200IDP05553 hypothetical protein lmo1136 [Listeria monocytogenes EGD-e] lmo1136 [Listeria monocytogenes EGD-e]  ali follow..  22  2KKTIKITTSLLLSFACVFSIGDFTKPHTVEAEIVYSLTPKPVNEIFTDPKLAQVVADWLKLPAATSSVTQTQLNTIKALHFDSKGVQSLEGVEYLKNLTQVFGYGNQVSDLGPLSNLTKLEVIQMPRNQISDLTPIANLTALMSLDFEFNNLQTIEPIKNLTNMLELNVSANPISDINAVKNMTQLEFLTLRDCEVSDLSPVENLSNMLMFWAGRNNISDITPLKNMSKLLGLSLFGNQIKDVSVIKNLTSLEDFDIKANQVSDISSLATSTTLETLTLSFNQIIDISPNQTRALDAVEIDNPLILPAPVIDENGSRVQPSKVSHAGVYANGEITWEGLQSNYILNYEYALPVTIGSLTTTYSGKITQPLLEKPVDPVTPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDVDPVDPVDPVNPVDPVNPVNPDPVNPMKPVEPIIPVTLENQFTLVNQTISVNEEIKLPKTGESGMTSSLFGGLILTVTSAILLRKRK... 539
4 -55.400IDP00034 internalin, putative BA_1346 [Bacillus anthracis str. Ames]  ali follow..  16  1............MFLNTNEILDYSALKYMPNLKSLTVANAKIKDPSFFANLKQLNHLALRGNEFSDVTPLVKMDHLDSLDLSNNKITNVAPLIEMKNVKSLYLSGNQIEDVTALAKMEQLDYLNLANNKITNVAPLSALKNVTYLTLAGNQIEDIKPLYSL-PLTDLVLTRNKVKDLSGIEQMKQLEELWIGKNEIKDVTPLSKMTQLKQLHLPNNELKDITPLSSLVNLQKLDLEANYISDLTPASNLKKLVFLSFVANEIRDVRPVIELSKTAYINVQNQKVFLEET--------EVNKEVKVPIYEKDGKISTKIRLKGEGGTYSNDAVKWSTPGEKVYEVKDPFADTGIFFTGSVIQNVVESKADNTSKEDNTSKEDAKVEVVEFKDVPKGHWSEEAIHYLAKENIFKGYGNGQFGFGD-SITRGQVASLVQRYLKLENKVEQKERFTDTKGHMFEQDIATVAQAG............................. 450
5 -55.300IDP05666 gene: inlA; internalin A [Listeria monocytogenes EGD-e] lmo0433 [Listeria monocytogenes EGD-e]  ali follow..  30  3KKRYVWLKSILVAILVFGSGVWINTSNGTNAQAATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--------LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN......................................................................... 419
6 -54.700IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames]  ali follow..  13  199EEDLKEIKELNIYAGQG--IESLKGLEYMENLERITIQGSDVRNIAPISQLKRLKVVDLSFNKIENVEPLVNLEKLDILELQNNRIADVTPLSQLKKVRTINLSGNKISDIKPLYNVSSLRKLYVSNNKITDFTGIEQLNKLGTLGVGSNGLVNIEPISQMSGIVELNLEKNDIKDITSLSKLTGLQSLNLEENYVSDVSSLSNLINLYELKLATNEIRDIRPIQELGKRIKIDAQRQKVFLDAYMNEEVKIPVYDVNGTALQNIEWKSEGGSITNGVIKWNSLGEKMYNTPITKEDLLTVKALKITDGKKEGITDFSGLEFMTNVEELTLQNVNMKNAEFISSLRNLKSVDLSYNQIEDIKPLHSLEDLEKLNVSDNGIKNVPELFKMQKLKTLDLSNNKLDNAAL---DGIHQLENLDALLVNNNEINNLDEISKVSKLNKLEMMSNKVRDISPLASLKNLQWLNLSDNKIQDISTLSSM................. 727
7 -54.600IDP05426 hypothetical protein lmo0610 [Listeria monocytogenes EGD-e] lmo0610 [Listeria monocytogenes EGD-e]  ali follow..  19  1...MKKMGVKIGLCILLIMPFTISFSANVSAEENISIKAAQDVVNIPDPALKSYLNGLLGQPSTSDI-TEAQMDTITDVTISNASLTDLTGLDYAHNLTILHLTNTGVTDYSLVANIPSLTNLNISGSNLTTIPDLNGLTNVTNLNLSSGKLDALTKFNKLPNLTFLNLDNNSITDFMPLKSLPNLASLFIQFCGVNDFRGIDSFPKLTNLAAFGQNVGSAILINSTIKSSALNYNEANQTIFVPFTLMTELNGVQISGSRLSIDDTGVTVSGITKDFFDSIEYNAFYDNPAGSYNSPPNFNSYSVSSGTYDHYFDIDHSLTITNDSAISYGEQTTVTEEQFLKDVHAETDDTKDTTKTEQQFLQDIAAKTSDGSKVTSDFDSVVDLAKVGTYKVTLNAVSADGLNADPVIAGNEPPTPPGPGPDPTPDPTPNPNNPNINPNPDNGQSAKSEIASNPSNSEVNIALPNTGDASQATTVLIGIILAGVAILFFRKRKHS. 589
8 -51.200IDP05076 hypothetical protein lmo0801 [Listeria monocytogenes EGD-e] lmo0801 [Listeria monocytogenes EGD-e]  ali follow..  19  3.KLCTVILFLTLLLNGFVPNAHAKTESPSADNNLQVAPPAAIKDLFPDPAMKSLNLKKLNKKSTSDTVTQTELNSLTGFQAINKGIKSIEGVEYLQNITELDVEKNQITDIAPVANLKKLTTLLINTNQITDISPVADLANLTTFYCGNNPISDISAVQNLTKLSIFNCYTANVEDISPVKNLVNLKTLSLGSNNIHDISDIEKLTALEYLSFSNNPVENPEVIGNLTNLNTLWLYNAQIRNIDFTANLPKLKSVYLYNNQISNISEVSNWANIEYLELNNNQITDITP--------VANLTTLKTLKLNDQIITNREIQKNISIENKVMDNFGNIVTPNNISDNGTYNSPTLSWNLNETKDNLSFTTKITILNINATYSGTVIQPLTKDSTRPIITADGKVSYPEG---TTKTTTEFLTDIHATTDDGSPIEVDLNALDFGTAGSYTVTLTAVDTAGNEATPVDVTIIITSVDTSKPVITA................. 482
9 -51.200IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  16  360ITSLKNLPNLVNITADSCAIEDLGTLNNLPKLQTLVLSDNELTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLDLKENQITSISEITDLPRLSYLDVSVNNLTTIGDLKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRITSTSVIHDLPSLETFNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLIVSDNNSYLRSLGTMDGVPKLRDLTNLTELNLRNNVYDDISGLSTLSRLIYLNLDSNKIEDISALSNLTNLQELTLENNKIENISALSDLENLNKLVVSKNKIIDISPVANMVNRGAIVTASNQTYTLPTVL.......................................................................................... 792
10 -51.100IDP01994 hypothetical protein lmo1290 [Listeria monocytogenes EGD-e] lmo1290 [Listeria monocytogenes EGD-e]  ali follow..  16  5.SNIVKIGVCFAVLAVPVSQTTLPVFAAEQPGLKASQDNVNIPD----STFKAYLNGLLGQASTANI-TEAQMDSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNQISGLSNLERLRIMGADVTSIPNLSGLTNLTLLDLSHSAHDDLTKINTLPKVTSIDLSYNAITDIMPLKTMPELKSLNIQFDGVHDYRGIEDFPKLNTLLAYSQTIGGKKLINSDIKSSKLTYNAENQTLYVPFSLMTERTVNYDGYVPDFVKSTASSDTYFLTITSDGLTVSDVSKTDFDNLEKMEYNARIDLSYQSYNTPEQFQNGGSYT--ISMPIYDHYFTVDHSLNITADSEKTYIENQLVTEATFLSDIHAKTDDGSTVTSDFADKVDFNTPGTYTVTLQSENVEKETPIPDPTPTPTPDPTPTPDPSPTPNPVINPNVNKPEVPSYKIPSLTVNEKKAKAEPSKEALPKTGDSLPVAGATVGFLLIGLSWFVSRKK.... 598
11 -50.600IDP91680 INLB_LISMO [Listeria monocytogenes]  ali follow..  25  1......MKEKHNPRRKYCLISGLAIIFSLWIIAETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE--------VSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEKA................................................................................................... 396
12 -48.900IDP05699 hypothetical protein lmo2396 [Listeria monocytogenes EGD-e] lmo2396 [Listeria monocytogenes EGD-e]  ali follow..  18  5VKIILALFLITTVFLPFSNVKAAPTDVVNIPDPVL---NSGLKNIIGNPFLDEITEANMATITVADLSNMSGAPGYPVT----GLIKDLTGLDKAVNMTKLYFSNSQIKNLDKIKNLPNLKKIVAVTTGLNNISALGEMPALEEVELGGDYITDFTPLLEKENLTSFSYNSYAWSEFKNFTKLKSLVKLDLTWNNITDLSPLTENDHITNLNLNYNQFTNVAPIATMKNLKVLYLNNNNLTSIDALNTLRGLTIAYADNNNITDLSNLKNFFEAMVAQGDYEGLQINN................................................................................................................................................................................................................... 296
13 -47.800IDP05548 hypothetical protein lmo0409 [Listeria monocytogenes EGD-e] lmo0409 [Listeria monocytogenes EGD-e]  ali follow..  26  11ITTIMTVVSLLIMVLGIQGNNDVKAAPQVAPP-------ASINQIFPDADLAEGIRAELQKSSVTDVVTKEELESISQLSVYAKKIASIEGLEYLTNLKFLNLNGNQITDLSPLSNLTKLTEIYIGDNKISDISPLQNLTNVTDLYLVDNDISDLRPLANLTQMYSLRLGGNSISDLNPVRNMTRLNNLEVTGSILKDLTPLADVTSLTRLTLSDNQIEDLSPLAGLTKLDNIAAYSNKITDITPVTNLTRLQYLDLGSNEITDLSPVANLQKLTSLHLANNQITNISM--------LEDLTNLTSLGLQNNKISDISVLKNLTHVTYLQLGYNQIVDVKIIGGLTNLTSLQLTQNHITDISPLANLTKIQYSDFSNQMITNLERNFSKTLSVPNNITSIDGTLIAPET.......................................................................................... 405
14 -47.100IDP02719 gene: inlG; internalin G [Listeria monocytogenes EGD-e] lmo0262 [Listeria monocytogenes EGD-e]  ali follow..  34  1..........................................................MKQRKTSVLHVLLVVTAILGISL------WVNASHGMKAQAESIAQPAPINEIFTDPALADEVKTELGKTSVTDEVTQTDLNQITKLEADDKGINSIEGIQYLTNLNMLGVSSNQITNITPLANLTNLDSLYLGDNKISDVTPLSGLTQLTFVQLSINQIKDVTPLANLTKLNYLDLRENQISDASPLVNMTDLTVLHLEKQQITAAPVVYQTNLVAPDILKNAYGEVVPPTTISNNGTFASPNITWNLDSFTSEVSYDFNQKITLGDNGKVTFAQPIVEAPVNYITTFDVDGTTTTENVVVDTLITEPAEPTKEGYTFSGWYDAETGGNEWDFAVDKMPATNMTLYAQFTINSYTATFDVDGETTNQK........................................................................ 367
15 -46.800IDP01918 hypothetical protein lmo0514 [Listeria monocytogenes EGD-e] lmo0514 [Listeria monocytogenes EGD-e]  ali follow..  16  9...................LATICMFIMIYPSTAAHAEETNIVNI-PDANLKTYLNGLLKQASDAPI-TKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKLFVDLNGLVNLQSLSINGSEVTHFKTFNKLPKLTYLYAQNSKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALATGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITDDGITEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFD--YNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS.. 605
16 -43.500IDP02661 hypothetical protein lmo1289 [Listeria monocytogenes EGD-e] lmo1289 [Listeria monocytogenes EGD-e]  ali follow..  16  4.......IKSNIMKIGVCSVMVLVPLSQTSAAEEIALKESQDVVNIPDPQLKKELNLYLNQAENADITE-AQMATFRNITLN-SGIKDLTGIEYLKNITTLSIN-NINASYEPIQTLSSLEKLVINGENVNAIPDLSVLSNLTFLDLSRTNIDDFSKISNIPNLNKLDISNNKITKISELNNLPSLQELRVSDCQITNFKGIEKFPNLTAFYGDGQLFGDSFETDGFKNIKSSELTFDANASIVTVNTILNYDGLSLPYNTNPDYTSIALGDQSYVVDFTQADFDELEAFEVYLGFDSGNISKPANLANGTYSLKQIGSYRAFSVDHSVNITAQDNISYIQNDTVTPEKFLTDIKADANGGTITSDLTDKTMITSDFESAVDFTKAGETLNAENDTQKAAPLTVKIRVNPKLPDPVVPIPYPDPTPDPTPDPTPTPEDSTSDDGGVQHSNSRNPRISISDSSLEKLPKTGDSLPESGVLLGFLTLALGIVIRKK..... 593
17 -42.100IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  19  79.......................EENTPKNNLKSTSENSKTYAELFPDVNLAKIIAKNISGTEINAEVSEAELQTITNLVATNQNITSLTGIEHLTALENINVNNNELTTIDSLFNIPTLKSISANNNKITGFSLVKTLPELHTLEVLGNAITELD-IENQPNLVTLSADELELKKLT-LKNLSQLNGLGRIASSISESVTLMNLPEIISVDISGNYLSDDIHLENLPAVKNLDISSNELTRLPKINDFPLLTTINVRSNKIDRLESLVDVPKLATLNADKQAVTLSK................................................................................................................................................................................................................... 352
18 -40.100IDP05549 hypothetical protein lmo0549 [Listeria monocytogenes EGD-e] lmo0549 [Listeria monocytogenes EGD-e]  ali follow..  17  3.......................FNWKVVLLFVLILAFIVPVYSKAVETGKEVPKSPELLDDKSSTLKNVNTPKNLKASPLANSTIADLFPDEGMNNFQTPTKTDWKVDDVVTEVELNRMWYLTSV-ATIGSIEGIQYLPNLYDVRLQDKQCKDLSPFNGYSQLYRLNINNGNISDISPLTELSTLNDIDLGGNNISDLSLFPKLPNLEEISLERNNISDVSPLAKFTKIKIFNLDENHITDLSSLTKMPNLQRLYVRYQTLDMEPVVTSSKYEFSIQPSIFGTTKPV--KITATKPKATIDPITSKITYSAEEMAKKPFYYTPLFPGVTYSWDENFPLNGSNSLVDFRGTITQPLTYIE----PPQVVSYNSGLTYEIGTSLTEQQFLNDVNLITDQPTTIT................................................................................................ 406
19 -35.000CPX_91662_05666 Complex of CADH1_HUMAN with INLA_LISMO [Undefined organism]  ali follow..  35 1018ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKAIYTATFDNDGVTTSQTVDYQGLLQEPTAPTKEGYTFKGWYDAKTGGDKWDFATSKMPAKNITLYAQYSANSYTATFDVDGKSTTNNGGNTTPPSANIPGSDTSNTSTGNSASTTSTMNASKEASLPTTGDSDNALYLLLGLLAVGTAMALTKKARASK 1683
20 -34.700IDP01745 hypothetical protein lmo2821 [Listeria monocytogenes EGD-e] lmo2821 [Listeria monocytogenes EGD-e]  ali follow..  14  16MVSNPLLTFAATNDVIDNTTE----ITTDKETSSTQPTIKNTLKAFPDDNFASEVAAAFEMQATDTI-SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD---------VSTLSKLTTLHCIQTDLLEI-DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD......................................................................................................................................... 364
21 -34.000IDP02440 hypothetical protein lmo0331 [Listeria monocytogenes EGD-e] lmo0331 [Listeria monocytogenes EGD-e]  ali follow..  17  3LSKILTIIVLSATVTSSLPIPTANEMKTENQLLKTDLKETPKEKTFPDDNLAKEVAETMNKNADESV-TVEELAKVTKLDARSQGIEDSTGIEYLTGLEVLNLEDNQLKSID-VSKNLNLKELTCSNNPLANLD-VSKNLALEELTCENNELTQLD-VSQNTALEYLYCPRNQLTKLD-VSKNSALRYLACDVNQLTNLD-VSKNPALTNLGCTKNQLTDLD-VSQNPNLGTLVCSDNQLTNLD-VSQNQALENLACDNNELKNID-INQALSLKELSCENNQLTNLD---------TTQNLALEILYCDDNQLTDL-DVRKNVNLLILFCNNNQLTNLAVGETIA---KVRCNNNQLKDVSSLPDYF................................................................................................................................... 375
22 -33.600IDP95476 internalin [Listeria monocytogenes EGD-e] NP_465993 [Listeria monocytogenes EGD-e]  ali follow..  20  27...........................KAKAASDLYPLPAPIIDVFPDDGLAKDMAKNLNKDSVNDVIDQDDLDALTGLGFETSTITN-AMFNNVTDVSIMEFGAKEFPDITTIPHLKTLFFADPPGRLTRNLPNYQNYPEMDTITMSGNNLISIPDFTGMPALKQLYMSEMLITSDELFNNIPLLITLDLSSNQLTTIPDFQNIPNLTFLDLNANLLTNTPDFQNLPKLTDLNLRHNNLTGTMVYTNLPSLESLNLDYNFLTELPS........................................................................................................................................................................................................................................ 281
23 -32.300IDP05081 putative cell surface protein, internalin proteins [Listeria monocytogenes EGD-e] lmo2027 [Listeria monocytogenes EGD-e]  ali follow..  18  2KKILTGLSTTLLLTVLL--LTITGGDLKAKAASDLYPLPAPIIDVFPDEGLAKDMAKNLNKDSVNDVIDQDDLDALTGLGFETETITN-RAMFNNVNIVSVMEFGEDLTEFPDISTIPHLNTLFFNTPPEGVTPDYQNYPEMVTITMSGSNLIGIPDFTGMPDLSQLYMADMMITSDDVFHTIPKLSTLDLSHNQLTNLPDFQNLTNLAELNLSFNNLTNTTNFTNLSNLNNLNLDYNHLNELPSLAEINMLVNPTVLGSYSADIPVSELSPGVYNFNVQFNDAYPI-TQEGCVYDWVLTVN..................................................................................................................................................................................................... 367
24 -30.500IDP95186 gene: lmo2445; lmo2445 [Listeria monocytogenes EGD-e] CAD00523 [Listeria monocytogenes EGD-e]  ali follow..  19  4........................APTIKAQADTVPL-PAPIIEAFPVEAIAEAIAGELDKDSVNDTITQADLDPLPSLGLTGEDLSVL-NNEVFTNAIELAIWSNNIGELPDSEALPALENIEANGANITVF-PDANYPNLTNVDLSQNNFGFNPKFVGMEGLVSINMENAGLSGYIAWMNMPNLDSLILNENHLISIPEIFLSQQLGTHSFANQTATYPTTIKQGENLKVFVPFIYQALDFIAPS-NHDLIIIKDNGRTLYEPP......................................................................................................................................................................................................................................... 253
25 -30.100IDP91625 gene: ECs2073; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB35496 [Escherichia coli O157:H7 str. Sakai]  ali follow..  16  14..SIQQHPEKNQLNWMLELNKWKEERILTGEIHRPECRNEAAKRI-NCAFLSKQNDIDLSGLNLSTQPP--GLQNFTSINLDNNQLTHFD-ATNYDRLVKLSLNSNTLESINHQGRNVSITHISMNNNCLRNID-IDRLSSITYFSAAHNKLEFVQ-LESCEWLQYLNLSHNQLTDI-VTGNKEELLLLDLSHNKLASL-HNALFPNLNTLLINNNLLSEIKMYSNFCKVQTLNAANNQLEKINLLTYLSSIKSLRLDNNKITRIDTTSDIRSLFPIIKKSESLNFLNISGENNCPTIQ........................................................................................................................................................................................................ 308
26 -27.200IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  13  2........................................................................KKKFVYLLLLVLFMTVLFQMLEAQAASTSWIEQE----LDGNEPFIAETEKILSKNRQD--ITLADLETIQKIHV--FGADSINKISDYKNLTALEANYGTITEVPEVGSLKELVTLNVDENNLQEFMVIFQLPKLEVLYISRGNITEIPTITTLSHLKVLDVSNQKLVTIDSILTTNWKAMHDGKLGMSLAGNQIASDIPANYLDNFNSGGNMLE................................................................................................................................................................................................................... 216
27 -25.000IDP91701 gene: SLIT3; slit homolog 3 protein precursor [Homo sapiens] NP_003053 [Homo sapiens]  ali follow..  18  43................................ASVDCHGLGLRAV-PRGIPRNAERLDLDRNNITRIMDFAGLKNLRVLHLEDNQVSVIEAFQDLKQLERLRLNKNKLQVLPEFQSTPKLTRLDLSENQIQGIPAFRGITDVKNLQLDNNHISCIEAFRALRDLEILTLNNNNISRILSFNHMPKIRTLRLHSNHLYRGKGLMEIPGIVEIRLEQNSIKAIGAFTQYKKLKRIDISKNQISDIAPFQGLKSLTSLVLYGNKITEIALFDGLVSLQLLLLNANKINCLRV------NTFQDLQNLNLLSLYDNKLQTISKFAPLQSIQTLHLAQNPFV.................................................................................................................................................................. 440
28 -24.900IDP05755 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0732 [Listeria monocytogenes EGD-e]  ali follow..  23  1.....................................................................................MKKAFLCLSAIVLSLNFVWINPITGSASETTKETNQQVNLKNNVTDIVTSLGGQTWLNEVNRQLAPKT--LTFEDLAKITTISLNNRSLTGEVPIKNLVSLQRLYLFSNKLSGEIPLGELTKLTELRLDYNELSGKIP-DGLGNISEIALQNNRLVGQIPLSNRTGKNEVNVSGNQVT............................................................................................................................................................................................................................................ 191
29 -23.500IDP91619 gene: ECs2672; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36095 [Escherichia coli O157:H7 str. Sakai]  ali follow..  9  1...........MFPLNDLSLKTQVQLNKITSNTESTIKQHELVSDDAINELSSELVSCLGNDKFTPVEDSNLLNMLSEFKLLREQCFRWNYTLLFENYGAYDKTGSITIEKSQEGTLPIRHKLEFISTNIAELDKLTKITDARLCKGFSDWASSVKEGASNLHSNELNLSSLSLGSVPPL--PEWIEMLSLVYNELDSIQ----PESCKELELDFNNLTEFPQV--PDGITLISVNNNLISYIDSF--PPKAKKIFICHNKLSEIPAL--PDTAKVFDCSENNIKEIRWF----------PKNLKEAYIEYNKIEVIPAIPG--NLKLLCMKCNPIKEAF............................................................................................................................................................... 330
30 -23.000IDP91618 gene: ECs2674; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36097 [Escherichia coli O157:H7 str. Sakai]  ali follow..  8  1...........MFPLNDLSLKTQVQLNKITSNTESTIKQHELVSDDAINELSSELVSCLGNDKFTPVEDCNLLNMLSEFKLLREQCFRWGNTLLFENYESYDKTGSITIEKNQEGTLPIRHKLEFISTNIAELDKLTKITDARLCKGFSDWASSVKEGGS-LHSNELDLSYLFLGSVPPL--PDWIEMLSLVYNELDSIQ----PESCKELELDFNNLTEFPQV--PDGITLISVNNNLISHIDSF--PPKAKKIFISHNKLSETPAI--PDTAKVFDCGYNKIQEIR----------YFPKNLKEARIGYNNIEVVPAIPG--NLKILFMECNPIKEAFLM............................................................................................................................................................. 332
31 -22.300IDP92552 gene: NOD2; nucleotide-binding oligomerization domain-containing protein 2 [Homo sapiens] NP_071445 [Homo sapiens]  ali follow..  22  763....................................................NVGHLKLTFCSVGPTFVLQHLRRPVALQLDYNSVGDIG-LPCLGVCKALYLRDNNISDIECALHCEQLQKLALFNNKLTDAKLLACRQNFLALRLGNNYITAAEGLRGNTSLQFLGFWGNRVGDAEALGDHQSLRWLSLVGNNIGSALMLAKNVMLEELCLEENHLQDAEGLKKNSSLKILKLSNNCITYLQALERNDTILEVWLRGNTFSLEEVDKLGCRDTRLLL............................................................................................................................................................................................................................ 1040
32 -19.500IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  17  2.....................................................................................LKKIIALIALVVIINTVSFTSVSASTPTWLEQT----MNNNEPFIKEIE--------TETGKTRANITQTD----LEAITALRV--TGASDIANIDMLTHLTLLKAVQGTISSVNSVGNLKELKILNLNTNHLSNFPTVYQLPKLEELQLNDGTIEEIPA-NMASHLKFLTVNNNRLVKVP......................................................................................................................................................................................................................................... 170
33 -19.100IDP05226 putative membrane associated lipoprotein [Listeria monocytogenes EGD-e] lmo0460 [Listeria monocytogenes EGD-e]  ali follow..  13  176.......................................TSFALAFYSSGIEKVIIRDNNYPTAPSLLTTEGMSNLMEVDLSGLDTSAVTTMWDMRALEELDVSHFDTSSVTNMSYMRNLEVLDVSNLDTSSVTNMYAMTSLEELDVSHFDTSSVTDMYRVEKLKKLDVSNFDTSSATAMVQMSALEKLDVSNFNTSLVTDMRAMTSLEALDVSNFDTSSVTNMAAMEKVEKLDLSTFDTSSVTNMGTMTALKSLYLDNTHAASSTDMFTGTTSLSYLFVSHNVSNFN................................................................................................................................................................................................................... 461
34 -14.600IDP91566 gene: ECs1568; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34991 [Escherichia coli O157:H7 str. Sakai]  ali follow..  12  3......................................PTSQLRPT-GTFCSYSAETSADIKSEITPIQIEEARASGRLYIKDCDIEYLPQL--PNEITSVTIENNNLTTLTGL--PVNTQNLSVINCEKLQITDMP--STVKNLHIELTDSPFIHFIS--EGIECLTVCHCYISGVP-----ESVRYLEIKGSATDSIKNVPN--GLSSLSINSYNPENQARIDNSPSLKTLSLTGCS--NIILPEKLESVTSVTIHAE............................................................................................................................................................................................................................................... 210
35 -10.500IDP91710 gene: NXF1; nuclear RNA export factor 1 isoform 1 [Homo sapiens] NP_006353 [Homo sapiens]  ali follow..  12  163.....................................................................................VEDASTASALKAVNYKILDRENRR-ISIIINSSAPPHTILNELKPEQVEQLKLI--MSKRYDGSQQALDLKGLRSDPDLVAIDVVLNRRSCMAATLRIPELLSLNLSNNRLYRLDDMSSIPNLKILNLSGNELKSERELDKIKKLEELWLDGNSLCDRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGL................................................................................................................................................................................................ 406
36 -10.100CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]  ali follow..  14  163.....................................................................................VEDASTASALKAVNYKILDRENRR-ISIIINSSAPPHTILNELKPEQVEQLKLI--MSKRYDGSQQALDLKGLRSDPDLVAIDVVLNRRSCMAATLRIPELLSLNLSNNRLYRLDDMSSIPNLKILNLSGNELKSERELDKIKKLEELWLDGNSLCD-AIRERFPKLLRLD................................................................................................................................................................................................................................................... 352
37 -9.320CPX_91686_91680 Complex of A1L467_HUMAN with INLB_LISMO [Undefined organism]  ali follow..  20 1452.................................................................................LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEKAVNLT............................................................................... 1791
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.