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Query: IDP02619 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. `Ames Ancestor`] GBAA1372 [Bacillus anthracis str. `Ames Ancestor`], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLKPEVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNHDFFSVKGNGYVKATNVEKLSDDDFVFNFLast
1 -112.000IDP02619 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. `Ames Ancestor`] GBAA1372 [Bacillus anthracis str. `Ames Ancestor`]  ali  100  1MRAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLKPEVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNHDFFSVKGNGYVKATNVEKLSDDDFVFNF 322
2 -100.000IDP06237 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae TIGR4] NP_345649 [Streptococcus pneumoniae TIGR4]  ali follow..  45  5YKAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRKLSNKEKDLVGKVFGGLTLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVNEIYL--------NGSPLEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDGVGWTEEVKTFLRYNANKALMNMGQDPLFPDSAEDPIVMNGISTGTSNHDFFSQVGNGYLLGEVEAM-QDDDYNYGL 319
3 -98.900IDP90989 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] y1222 [Yersinia pestis KIM10+]  ali follow..  39  10ISAINWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWATLTPHEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSEDNGPLQKKADIISQHYH--------NDDPLKKKIASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLGKIDSAHRQEIKNFAFDLLQDLYDNEVRYTEDLYDHVGWTEDVKKFLHYNANKALMNLGYEALFPASQAAVILAALSPNADENHDFFSGSGSSYVIGKAVNT-EDEDWDF.. 323
4 -87.500IDP95259 ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ATCC 17978] YP_001083788 [Acinetobacter baumannii ATCC 17978]  ali follow..  20  40.DLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDIALWKSETEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEAIHTHAYQYCIESLGMDEG--EVFNMYREIPSVARKAAWGLKYTQSLGTPENDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGMNASMMEEYLKFICNRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALS........... 360
5 -11.200IDP04040 gene: cotJC; spore coat protein CotJC [Clostridium perfringens ATCC 13124] CPF_1068 [Clostridium perfringens ATCC 13124]  ali follow..  11  13.........................................NLKCNDLRMAKFLISQYGGPDGELSAALRYLNQRYMPTNKAKGLLTDIGTEEMAHVEMIATMIYQLMENASLEDLKKAGLAERYTDHGKALFYSDAQGNATYIQAKGDVVADLHEDMAAEARATYQWLINLTD-------QDIKEILRFLREREIVHFQRFGEALMDVQDKMKC........................................................................................................... 186
6 -6.470IDP01174 hypothetical protein BA_2823 BA_2823 [Bacillus anthracis str. Ames]  ali follow..  10  1.....MNNILNQIKKEVNMDLLNGLWKRAAFALYDDEHVYPLFLKDNDEYRVLKWEEQFKGDTCILFKDYPTAIVNMNRYKDYASLLAIVVHELFHCYQYLNKESRFPNESLGFQYPIIEENIQLRNKERICLYDAVHCKSQAEKNNEAFITYEYMVESIEGPAWYVEMNAYNTVCKSDESDTLRKYSGLILDVYDANCNMRKSCYSSLLDEILPEWKISFFNSLYAFLKQNINVDLSLNNEITISKETKQILHFVQNERDKEI.......................................................... 292
7 -4.760IDP06019 phospholipase A2 activating protein, putative [Toxoplasma gondii ME49] EEB01121 [Toxoplasma gondii ME49]  ali follow..  639............................MEFDAQFPEDSPAHLTALEKQYLLDALEKIQSPSFMKKE---------FRACELDVIFEKLAVWPSSKAVPVMDVWRALALHPQYHAVHRK-SGDHGWMTVVVALRHLKEACASQADETPLI---LCCLRFLANLMDLTTNRTVMLRHANVVLESLASDRVLTNPNKNVRLTAASLLANAFATKEETEGRIKVLKLLRGLMEREGDADVFY-----------------------RCLLAVLTILATPPQPQQRRLLRGACQEIDMADVLPPLNQNIPAEGRIGDAAQDILLL.. 897
8 -4.420IDP06057 hypothetical protein jhp0260 [Helicobacter pylori J99] NP_222981 [Helicobacter pylori J99]  ali follow..  113...............................QIDKAIELLHKIRKEEKTIATDNVLYLTQKRLDKAFPLLNKFYNQVHDEDSLEKLITIYFLQNRKKEGLDLLQSHIDRYGCSEQLCQKALNTFTQFNELDLAKTTFARLYEKNPIVQNAQFYIGVLILLKAQQIAELFLLLDLYTAQKKFDQASKQASLIYQDPKFLGLEAIYHYESLSANKKKLTKEEMLPIIQKLEQATKERQAWLAKTKDKEDAQDAFFYNFLGYSLIDYDMDVKVRKALALDSNSVLYLDSLAWGYYKLGNCLEAKKIFSSIAKELIQNEPELKEHN 423
9 -4.380IDP00031 gene: blaI; penicillinase repressor BA_1078 [Bacillus anthracis str. Ames]  ali follow..  4.........QLPKISEAELEIMKVLWLKSPQTANEIIEELEDPMDWKPKTIRTLINRLVQKEAVSYH----------QDKGRMYAYYPLVSQDNYLQVETKSLLKRFCGAAFKPLLVNFLKEEKLSSEDINELKRLLDEKTEENKRKD.............................................................................................................................................................................. 132
10 -4.260IDP91543 cAMP-specific 3`,5`-cyclic phosphodiesterase, putative [Toxoplasma gondii ME49] TGME49_057080 [Toxoplasma gondii ME49]  ali follow..  12 1281..................KAAIGVAWDLDFFELNE--------RVNNNALLVTGQVQLLPLLRPEGLRCSPQVVRCYLRCLQQQYCPSNPYHNQLHAAMVSHCCLIIVNEVLPSK-----QALTYVDELCLIIASVAHDVGHPGLNNQYLISATTYNAVLENYHAACCFRTAGINEDHNIFSGLAKIIGLISTDMSKHISYVSRLRVRAESGNFDVNNEGDRWLLFQGCIKAADLAHTATFWDNHKRWAECLCEEFFKQGDEERRQGMNVMDIFDRRQKDRF-------PQSQYRFIE........................ 1557

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.