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Query: IDP02661 hypothetical protein lmo1289 [Listeria monocytogenes EGD-e] lmo1289 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMSIKSNIMKIGVCSVMVLVPLSQTSLPSFAAEEIALKESQDVVNIPDPQLKKELNLYLNQAENADITEAQMATFRNITLNSGIKDLTGIEYLKNITTLSINNINASYEPIQTLSSLEKLVINGENVNADIIPDLSVLSNLTFLDLSRTNIDDTIFSKISNIPNLNKLDISNNKGITKISELNNLPSLQELRVSDCQITNFKGIEKFPNLTAFYGDGQLFGIDSFETDGFKNIKSSELTFDANAKTLFVPFSIVTVNTILNYDGLSLPYNTNPDYTSIALGDQSYVVTNDKISINQQGITLSDFTQADFDELEAFEVYLGFDSGNISKPANLANGTYSLKQIGSYRAFSVDHSVNITAQDNISYIQNDTVTPEKFLTDIKADANGGTITSDLTDKVDFTKPGNYTVTLNAQNTKGLKGEPIQVTVTIIEKTVITADPEVTYDLNEAITEEEFLAEIKATTNDDTMITSDFESAVDFTKAGEYIVTLNAENDTQKAAPLTVKIRVNPKLPDPVVPIPYPDPTPDPTPDPTVPVPTPEDSTSDDGGVQHSNSRNPRISISDSSLEKLPKTGDSLPESGVLLGFLTLALGIVIRKKLast
1 -104.000IDP02661 hypothetical protein lmo1289 [Listeria monocytogenes EGD-e] lmo1289 [Listeria monocytogenes EGD-e]  ali  100  1MMSIKSNIMKIGVCSVMVLVPLSQTSLPSFAAEEIALKESQDVVNIPDPQLKKELNLYLNQAENADITEAQMATFRNITLNSGIKDLTGIEYLKNITTLSINNINASYEPIQTLSSLEKLVINGENVNADIIPDLSVLSNLTFLDLSRTNIDDTIFSKISNIPNLNKLDISNNKGITKISELNNLPSLQELRVSDCQITNFKGIEKFPNLTAFYGDGQLFGIDSFETDGFKNIKSSELTFDANAKTLFVPFSIVTVNTILNYDGLSLPYNTNPDYTSIALGDQSYVVTNDKISINQQGITLSDFTQADFDELEAFEVYLGFDSGNISKPANLANGTYSLKQIGSYRAFSVDHSVNITAQDNISYIQNDTVTPEKFLTDIKADANGGTITSDLTDKVDFTKPGNYTVTLNAQNTKGLKGEPIQVTVTIIEKTVITADPEVTYDLNEAITEEEFLAEIKATTNDDTMITSDFESAVDFTKAGEYIVTLNAENDTQKAAPLTVKIRVNPKLPDPVVPIPYPDPTPDPTPDPTVPVPTPEDSTSDDGGVQHSNSRNPRISISDSSLEKLPKTGDSLPESGVLLGFLTLALGIVIRKK 593
2 -75.500IDP01994 hypothetical protein lmo1290 [Listeria monocytogenes EGD-e] lmo1290 [Listeria monocytogenes EGD-e]  ali follow..  38  1.MSVKSNIVKIGVCFAVLAVPVSQTTLPVFAAEQPGLKASQDNVNIPDSTFKAYLNGLLGQASTANITEAQMDSLTYITLNINVTDLTGIEYAHNIKDLTINIHATNYNQISGLSNLERLRIMGADVTSDKIPNLSGLTNLTLLDLSHSAHDDSILTKINTLPKVTSIDLSYNGAITDIMPLKTMPELKSLNIQFDGVHDYRGIEDFPKLNTLLAYSQTIG-GKKLINSDIKSSKLTYNAE----------NQTLYVPFSLMTERTVNYDGYVPDFVKSTASSDTYFTMNEQQVNGNRL-TITSDGLTVSDVSKTDFDNLEKMEYNARIDLSYQSYNTPEQFQNGGSYTISHSLNITADSEKTYIENQLVTEATFLSDIHAKTDGSTVTSDFADKVDFNTPGTYTVTLQSENNAGLKATPVQVNVTIKAKTTITADEKITYKVDTSKTEAAFLADIKATTNDGTAITSDFATVVDLSKPGKYVVTLNAENDLQKALPVQVMVIVEKETDPTPTPTPDPTPTPDPSPTPNPVINPNVNKPEVPSYKIPSLTVNEKKAKAEPSKEALPKTGDSLPVAGATVGFLLIGLSWFVSRK 597
3 -73.800IDP05426 hypothetical protein lmo0610 [Listeria monocytogenes EGD-e] lmo0610 [Listeria monocytogenes EGD-e]  ali follow..  34  3.KMGVKIGLCILLIMPFTISFSANVS----AEENISIKAAQDVVNIPDPALKSYLNGLLGQPSTSDITEAQMDTITDVTINASLTDLTGLDYAHNLTILHLTTGVTDYSLVANIPSLTNLNISGSNLTTNSIPDLNGLTNVTNLNLSSGKLDNSALTKFNKLPNLTFLNLDNNPSITDFMPLKSLPNLASLFIQFCGVNDFRGIDSFPKLTNLAAFGQNVG-SAILINSTIKSSALNYNEANQT-------IFVPFTLMTERSMNFDGYLFPFTTNTASSSTNGVQISGSRLSIDDTGVTVSGITKDFFDSITKMEYNAFYDNPAGSYNSPPNFNSYSVSSGTYDHYFDIDHSLTITNDSAISYGEQTTVTEEQFLKDVHAETDGTPVTSDFNTIVDFSKPGVYTVTLNAENAAGLKATPTQVTVTILAKPVITADKSISYTKDTTKTEQQFLQDIAAKTSDGSKVTSDFDSVVDLAKVGTYKVTLNAVSADGNADPVIILVNVVAGNEPPTPPGPGPDPTPDPTPNPNNPNINPNPDNGQSAK-----SEIASNPSNSEVNIALPNTGDASQATTVLIGIILAGVAILFFRK 585
4 -72.000IDP01918 hypothetical protein lmo0514 [Listeria monocytogenes EGD-e] lmo0514 [Listeria monocytogenes EGD-e]  ali follow..  29  1............MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSYTDLTGLEEAGNLVTLSLNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGTNPRITLKSGKLDYNETNQTLYLP-FSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGKADPVTVVVTVTTSDSGHVDPVPPTPEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRK 602
5 -47.900IDP05423 gene: inlH; internalin H [Listeria monocytogenes EGD-e] lmo0263 [Listeria monocytogenes EGD-e]  ali follow..  15  1MKKNSVFKLVLMVTAILGLSLYVTTSQGVEVRAESITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTADLDGITTLSAGTGVTTIEGVQYLNNLIGLELKNQITDLTPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS-DISPLASLPNLIEVHLKNNQIS-------DVSPLANTSNLFIVTLTNQTITNQPVFYQNNLVVPNVVKGPSGAP--IAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTVTQPLTEAYTAVFDVDGKQTSVTVGANELIKEPTAPTKEGYTFTGWYDAKTGGTKWDFATDKMPAED-----------ITLYAQFTINSYTATFDIDGKLTTQKVTYQSLLEEPVAPTKDGYTFTGWYDAKTGGT---KWDFATGKMPAGNITLYAQFTKNDNP--------------------------NPDDPTTNTPTGNGDGTSNPSNSGGNTTLPTAGDENTMLPIFIGVFLLGTATLILRK 543
6 -46.700IDP05656 hypothetical protein lmo0171 [Listeria monocytogenes EGD-e] lmo0171 [Listeria monocytogenes EGD-e]  ali follow..  18  86..............................NLKSTSENSKTYAELFPDVNLAKIIAKNISGTEDINVSEAELQTITNLVANQNITSLTGIEHLTALENINVNNELTTIDSLFNIPTLKSISANNNKITG-NFSLVKTLPELHTLEVLGNAITELDIETLMNLPEIISVDISGNYLDSDDIHLENLPAVKNLDISSNELTRLPKINDFPLLTTINVRSNKIRLESSKLVDVPKLATLNADKQAVTLSKTIAAGNFTIGELSGLSKVSYTFDEVINSPAIAGKYTGTVNQPIEVKAVPVIVADKSVSYAPVNAKDEATFLQDIRASTVTLHAKNEFDLKADPVTVVVHINDIQKPQVAVNSNDISFEVGTELTSEVLLAKSGAVVTDLYDEAI-LSEVDSSKLGTYEATIIAKSKSGASSDPIKLSVKIVDTEIQINNPEIIIEKGSELTEGQIIDQVGITATDNYDQDLNIHSKVDTSKPGSYEVTIYTEDSSGNRSETVTITVKVPEARIGKITIQYMDSEENNVTPELPSNNNNSVNGSRQTPSKSVKKQSKAYSKINQMPMNLPETGDSTNLLFIFMGVLLLAGLTLSKAK 828
7 -46.400IDP05076 hypothetical protein lmo0801 [Listeria monocytogenes EGD-e] lmo0801 [Listeria monocytogenes EGD-e]  ali follow..  23  29.PSADNNLQVAPPAAIKDLFPDPAMANEVLKSLNKKLNKKSTSDTVTQTELNSLTGFQAINKGIKSIEGEYLQNITELDVEKNITDIAPVANLKKLTTLLINNQITDISPVADLANLTTFYCGNNPISD--ISAVQNLTKLSIFNCYTANVED--ISPVKNLVNLKTLSLGSNN-IHDISDIEKLTALEYLSFSNNPVENPEVIGNLTNLNTLWLYNAQIR-NIDFTANLPKLKSVYLYNNQIS-------NISEVSNWANIEYLELNNNQITDITPVANLTTLKTLKLNDQIITNREIPQKNISIENKVMDNFGNIVTPNNISDNGTYNSPTLSWNLNETKDNLSYDFTTKITILNADGKVSYPEGTTKTTTEFLTDIHATTDDGSPIEVDLNALDFGTAGSYTVTLTAVDTAGNEATPVDVTIIITSKPVITADEKVSYPEGTTKTAAEFLTDIHATTDDGSPIEVDL-NAVDFGTAGSYTVTLNAVDNEATPIQVTIIITNSKKIDPIIPVEPGGNDVKPEKPNPKDSEIPLSIIPKDNIEKTNSINVIKMIETNEIKNKMLPKTGDKLPL-TVFLGMLITLAGISYLRK 646
8 -43.500IDP02569 gene: inlE; internalin E [Listeria monocytogenes EGD-e] lmo0264 [Listeria monocytogenes EGD-e]  ali follow..  16  8...LRILVTLAVVLAITFWVGMSSKE----VQAAVIEHPTPINEIFTDPVLTDNVKTLLGKADVTDEVTTDLDSVTHLSAKAGITTIEGLQYLTNLSELELINQVTDLNPLTNLTKITELRLSGNPLKD--VSALAGLKNLKTMDLIYTDITD--VTPLAGLSNLQVLNLDINQ-ITDITPLAGLSNLQFLSFGSTQVSDLTPLANLSKLTTLNAMNSKVS-DVSPLTGLSNLTEVYLEENQIS-------DVSPLAKLPNLSIVTLTNQTITNQPVFYQNKPIVPN---------------VVTGLSGELIAPDTISDNGTYTSPNLTWDLNSFINSVSYTFNQSVTFKNTTAPFSGTVTQPLTEVYAVVFDVDGEQTSAMVGVNELINEPTAP--------------------------------------------------------------------AKEGYIFDGWYDAKTDGN---KWDFGIDKMPASDITLYAKFTENEEPNASSPINVEPNDNNSDNAE---PNASSSNNVQENGTNEGINNLNSSGEDKVNIKLPITGDKLNVLPIFVGAVLIGIGLVLFRK 494
9 -43.100IDP05666 gene: inlA; internalin A [Listeria monocytogenes EGD-e] lmo0433 [Listeria monocytogenes EGD-e]  ali follow..  16  98...NNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPKNLTNLNRLELSSNISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLE-------DISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIADAQTGGTKWNFSTDKMPTNDINLYAQFSTKEGYTFKGWYDAKTGGDKWDFATSKMPAKNITLYAQYSANSYTATFDVDGKSTTQAVDYQGLLKEPKAPTKAGYTFKGWYDEKTDGK---KWDFATDKMPANDITLYAQFTKNPVAPPTTGGNTPPTTNNGGNTTPPSANIPGSDTSNTSTGNSASTTSTMNPYNSKEASLPTTGDSDNALYLLLGLLAVGTAMALTKK 795
10 -43.000IDP05549 hypothetical protein lmo0549 [Listeria monocytogenes EGD-e] lmo0549 [Listeria monocytogenes EGD-e]  ali follow..  17  30..KEVPKSPELLDDKSSTLKNVN--TPKNLKASPLTPANSTIADLFPDEGMAKTIANQLGRTENNNFTEVELNRMWYLTSVATIGSIEGIQYLPNLYDVRLDKQCKDLSPFNGYSQLYRLNINNGNISD--ISPLTELSTLNDIDLGGNNISD--LSLFPKLPNLEEISLERNN-ISDVSPLAKFTKIKIFNLDENHITDLSSLTKMPNLQRLYVRYQTLDMEPV--VTSSKYEFSIQPSIFGTTKPVKITATKPKATIDPITSKITYSAEEMAKKPFYYTPLFPGVTYSWDENFPLNGS---------------------------------NSLVDFRGTITQPLTYIEPPQVVSYNSGLTYEIGTSLTEQQFLNDVNLITDQPTTITS-VKLKNLNTVGIYWVAVKASNIEGNAEANIMVTIKYKP-PVITADAEYTYLVGDKVNATQFRADVNATLTGEGTLRDDFIYKVRLNTAGDYVVTLTSPKSGYEQDAIPVTVIVHVKELLELQIPDEFRMDIDANADSVPISDKKQTLKCYGSSGKAELEVIDRRTVRQGWTITGAMTPFTNS.................... 591
11 -39.300IDP05699 hypothetical protein lmo2396 [Listeria monocytogenes EGD-e] lmo2396 [Listeria monocytogenes EGD-e]  ali follow..  23  1........MYKLVKIILALFLITTVFLPFSNVKAAP----TDVVNIPDPVLNSGLKNIIGNPFLDEITEANMATITVADLSGLIKDLTGLDKAVNMTKLYFSSQIKNLDKIKNLPNLKKIVAVTTGLNN--ISALGEMPALEEVELGGDYITD--FTPLLEKENLTSFSYNSYANNDEFKNFTKLKSLVKLDLTWNNITDLSPLTENDHITNLNLNYNQFT-NVAPIATMKNLKVLYLNNNNLT-------SIDALNTLRGLTIAYADNNNITDLSNLKNFFEAMVAQGDYEGL........................................................................................................................................................................................................................................................................................................... 292
12 -39.300IDP05553 hypothetical protein lmo1136 [Listeria monocytogenes EGD-e] lmo1136 [Listeria monocytogenes EGD-e]  ali follow..  15  6...KITTSLLLSFACVFSIGDFTKPHTVEAEIVYSLTNPKPVNEIFTDPKLAQVVADWLKLPAATSSVTTQLNTIKALHFDSKVQSLEGVEYLKNLTQVFGGNQVSDLGPLSNLTKLEVIQMPRNQISD--LTPIANLTALMSLDFEFNNLQT--IEPIKNLTNMLELNVSANP-ISDINAVKNMTQLEFLTLRDCEVSDLSPVENLSNMLMFWAGRNNIS-DITPLKNMSKLLGLSLFGNQIK-------DVSVIKNLTSLEDFDIKANQVSDISSLATSTTLETLTLSFNQIIDIS-PLKNLTNLTRLELENQTR----ALDAVEIDNPLILPAPVIDENGSRVQPSKVSHAGVYANGEITWEGLQSNYILNYEYALPVTIGSLTTTYSGKITQPLLEKPVDPVTPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVNPVDPVDPVDPVDPVDPVN-------------------------------------------PVDPVNPVNPDPVNPMKPVEPIIPVTLENQFTLVNQTISVNEEIATQPAKDIVKLPKTGESGMTSSLFGGLILTVTSAILLRK 537
13 -38.600IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames]  ali follow..  15  520......................DMKLRQYMNKHNFERKNVNTPITKEDLTVKALKITDGKKEGITDFSGEFMTNVEELTLQNVMKNAEFISSLRNLKSVDLSNQIEDIKPLHSLEDLEKLNVSDNGIKN--VPELFKMQKLKTLDLSNNKLDNAALDGIHQLENLDALLVNNNE-INNLDEISKVSKLNKLEMMSNKVRDISPLASLKNLQWLNLSDNKIQ------------------------------DISTLSSMLDLLSLKLAGNEIRDVRPVIQLAQWITVDIKNQKIVLEDGQMNQEIQIPIYDLEGEIFEDIESTDGIVTDRGTVVWKTPGAKIYSFSLNGNYHGLSLLFSGTVT--QNIVAKEEPKEPVEEVEGSKEPIKEAEGSKEEPKEPAKEVEGSKEEKEPAKEVEGSKEEVKEPAKEVEGPKEEVKEPTKEVEGPKEEVKEPTKEVEGPKEEVKEPMKEVEGSKEEVKGPTKEAEGSKEEVKEPTTEVEGSKEVKEPGKEVEGSKDAINQSAVAQETNVNNQVGKEKVVENQNMKENKPAVTKQEESKKSLGATGGQENTSTLLSGLALVLSALFVFRK 1065
14 -38.000IDP91680 INLB_LISMO [Listeria monocytogenes]  ali follow..  16  1.....MKEKHNPRRKYCLISGLA--IIFSLWIIIGNTVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTNELNSIDQIIANNSIKSVQGIQYLPNVTKLFLGNKLTDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNK-----PINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN-EVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQ......................................................................................................................................................................................................................................... 353
15 -37.700IDP00034 internalin, putative BA_1346 [Bacillus anthracis str. Ames]  ali follow..  15  1..................................MFLNTNEILDYSALKYMPNLKSLTVANAKIKDPSFANLKQLNHLALRGNFSDVTPLVKMDHLDSLDLNNKITNVAPLIEMKNVKSLYLSGNQIED--VTALAKMEQLDYLNLANNKITN--VAPLSALKNVTYLTLAGNQ-IEDIKPLYSL-PLTDLVLTRNKVKDLSGIEQMKQLEELWIGKNEIK-DVTPLSKMTQLKQLHLPNNELK-------DITPLSSLVNLQKLDLEANYISDLTPASNLKKLVFLSFVANEIRDVR-PVIELSKTAYINVQNQKVFLEETEVNKEVKVPIYEKDGKISTKIRLK....................................................................................................................................................................................................................................................... 300
16 -37.300IDP05755 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0732 [Listeria monocytogenes EGD-e]  ali follow..  12  3...................KAFLCLSAIVLSLNFVWINPITGSASKIETTKETNQQVNLKNNVTDIVTSEDLGGQTWL-----------------INEVNRQLAPKTVDTFEDLAKITTISLNNRSLTGEVPPEIKNLVSLQRLYLFSNKLSGEIPAELGELTKLTELRLDYNELSGKIP--DGLGNISEIALQNNRLVGQIPLSNRTGKNEVNVSGNQVTNSQQSEPSVYSAYTFVYPSSTPEYSGHIKANNSFISNLTNLQVVYMFNSELFDGHDVTITDTNDGRVLYDGTLTSD-NVMLDNAPNNPQNQTTFLIDILPVPAHDLTVNYVDEAGAEIHEPQTVSMPTNGLGTLSSEAQTVTYVYKKVNGAPVTVKYEDQNGVEITTSDVLTGKLDATYQSKANSKLPANASGIFETNPQTVTYVYQAVPATIKAHDSTIYVEDKWSAEDNFDSAVNSVGAAVSFDDEVEGTVDTTKAGVYPVTYSFAGE---SVTINVTVKAKDLPAPPVTPTKPVVPIQPTNPDQPDQAAPGEHQASTDKSEALKVTVAQKEQPTVAGNLKLPTTGDNLWDSVLVFGLIAVCVALFFWRK 633
17 -36.800IDP02719 gene: inlG; internalin G [Listeria monocytogenes EGD-e] lmo0262 [Listeria monocytogenes EGD-e]  ali follow..  14  1....................................MKQRKTSVLHVLLVVTAILGISLWVNASH-----GMKAQAESIAQPAINEIFTDPALADEVKTELGTSVTDEVTQTDLNQITKLEADDKGINS--IEGIQYLTNLNMLGVSSNQITN--ITPLANLTNLDSLYLGDNK-ISDVTPLSGLTQLTFVQLSINQIKDVTPLANLTKLNYLDLRENQIS------------------------------DASPLVNMTDLTVLHLEKQQITAAPVVYQTNLVAPDILKNAYGEV----VPPTTISNNGTFASPNITWNLDSFTSEVSYDFNQKITLGDNGKVTFAGTVVQPIVEAPVNYITTFDVDGTTTTENVVVDTLITEPAEPTKE-----GYTFSGWYDAETGGNEWDFAVDKMPATNMTLYAQFTINSYTATFDVDGETTNQKVDYQALLQEPTAPTKDGYTFVGWYDAKTGGT---EWDFATSKMPTSDITLYARFTKNPSSDNSQTAP----------------------GKDDKNDKDKLTIKANDSADATSTKLPKTSDDSSMIPTILGTLFIGGAILILRK 485
18 -34.600IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]  ali follow..  19  434...PKLEKLDLKENQITSISEIT--DLPRLSYLDVSVNNLTTIGDL--KKLPLLEWLNVSSNRLSDVSTTNFPSLNYINISNNIRTVGKMTELPSLKEFYANNSISDISMIHDMPNLRKVDASNNLITN--IGTFDNLPKLQSLDVHSNRITS--TSVIHDLPSLETFNAQTNL-ITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLIVSDNNSYLRSLGMDGVPKLRILDLQNNYLNYTGTEGNDISGLSTLSRLIYLNLDSNKIEDISALSNLTNLQELTLENNKIENIS-ALSDLENLNKLVVSKNKIIDISPVANMVNRGAIVTASNQTYTLPTVLSYQYKSAAKVTADAEQTYTIGDTISEEQFLKDVNAKSSDAPVTSDFATVVDLNTFGEYEVTLTSEKDGIQGDSCKVIVKVLHGAPVISADQTISYDKHATITEKQFLEDIHASTDLDTAITTNFSTAVNLNKGGDYTVALNSENEDGVAETVYVTVTVNKDPAPIISAKTEITYDKFSKKTEAAFLDDIDADTNDGSIVTSNFATAVNLDKAGDYTVTLNSINSDGV.................... 1086
19 -34.500IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]  ali follow..  15  2..................................................KKKFVYLLLLVLFMTVLPFQEAQAASTSWIEQELDGNEPFADLETIQKIHVFGADSIPNKISDYKNLTALEANYGTITE-VPESVGSLKELVTLNVDENNLQE-FPMVIFQLPKLEVLYISRGN-ITEIPTITTLSHLKVLDVSNQKLVTIDSILTTNWKAMHDGKLG-MSLAGNQIASDIPANYLDNFNSGGNMLEFYDNPTIDYLQKQDQLTYTGGTIEVPLNTDFKQLTPDKTNLGLKSNIPLFSQHEFMYYDDGTSANILTNGVATDVGDGYITIKSTLSTNSNPFAKVRVPIKVTAPLKGADVTVQYLDSNGDTLATPDILSGNEGDAYASTPKT----------IDGYTLTQTPTNAQGTFTEEPQTVIYVYTKNSVAAAPVTVKYLNEEGKILTASDNLTGNVDDPYQTKAK-ESKLPTNASGVFTVTYVYKTIPASIKAHDSTMNVGDTVKATVVPAPPITPIKPVVPAPANPNTPSTQQTPTKQSGTLKIKATHQEQPIVAGNLKLPTTGDNLWDSVLYFGFITVCLSFVLFFR 619
20 -33.400IDP95476 internalin [Listeria monocytogenes EGD-e] NP_465993 [Listeria monocytogenes EGD-e]  ali follow..  18  1.MRKVLMFLSTALLLAILSLSFTGLDLKAKAASDLYPLPAPIIDVFPDDGLAKDMAKNLNKDSVNDVIDNNVTDVSIMEFGAKLTEFPDITTIPHLKTLFFADRNLSLPNYQNYPEMDTITMSGNNLIGS-IPDFTGMPALKQLYMSEMLITSDELPNFNNIPLLITLDLSSNQ-LTTIPDFQNIPNLTFLDLNANLLTNTPDFQNLPKLTDLNLRHNNLTGTMVNYTNLPSLESLNLDYNFLTELPSNVLDTIYVQSQN............................................................................................................................................................................................................................................................................................................................................. 293
21 -32.800IDP05548 hypothetical protein lmo0409 [Listeria monocytogenes EGD-e] lmo0409 [Listeria monocytogenes EGD-e]  ali follow..  16  1........MKSKNNYFKQITTIM--TVVSLLIMVLGIQGNNDNQIFPDADLAEGIRAELQKSSVTDVVTEELESISQLSVYAKIASIEGLEYLTNLKFLNLNNQITDLSPLSNLTKLTEIYIGDNKISD--ISPLQNLTNVTDLYLVDNDISD--LRPLANLTQMYSLRLGGNSNISDLNPVRNMTRLNNLEVTGSILKDLTPLADVTSLTRLTLSDNQIE-DLSPLAGLTKLDNIAAYSNKIT-------DITPVTNLTRLQYLDLGSNEITDLSPVANLQKLTSLHLANNQITNIS-MLEDLTNLTSLGLQNNKISDISVLKNLTHVTYLQLGYNQIVDVKIIGGLTNLTSLQLTQNHITDISPLANLTKIQYSD........................................................................................................................................................................................................................ 370
22 -31.500IDP95186 gene: lmo2445; lmo2445 [Listeria monocytogenes EGD-e] CAD00523 [Listeria monocytogenes EGD-e]  ali follow..  13  7.IKAQADTVPLPAPIIEAFPVEAIAEAIAGELDKDSVNDTITQADLDTMTAIPLPSLGLTGEDLSVLNNEVFTNAIELAIWSNIGELPDSEALPALENIEANGANITVFPDANYPNLTNVDLSQNNFGF-NIPKFVGMEGLVSINMENAGLSGYIADIWMNMPNLDSLILNENHLISIPEDIFLSQQLGTHSFANQTATYPTTIKQGENLKVFVPFIYQA..................................................................................................................................................................................................................................................................................................................................................................................... 228
23 -31.000IDP05081 putative cell surface protein, internalin proteins [Listeria monocytogenes EGD-e] lmo2027 [Listeria monocytogenes EGD-e]  ali follow..  19  1.MKKILTGLSTTLLLTVLLLTITGGDLKAKAASDLYPLPAPIIDVFPDEGLAKDMAKNLNKDSVNDVIDDDLDALTGLGFGEDLTEFPDISTIPHLNTLFFNTPPEGLPDYQNYPEMVTITMSGSNLIG-AIPDFTGMPDLSQLYMADMMITSDDVPDFHTIPKLSTLDLSHNQ-LTNLPDFQNLTNLAELNLSFNNLTNTTNFTNLSNLNNLNLDYNHLNELPSNVLNSIFIENQ..................................................................................................................................................................................................................................................................................................................................................................... 270
24 -30.400IDP01745 hypothetical protein lmo2821 [Listeria monocytogenes EGD-e] lmo2821 [Listeria monocytogenes EGD-e]  ali follow..  16  18.SNPLLTFAATNDVIDNTTEITTDKETSSTQPTIKNTLTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN----DVTPLTKLTYLNCDTNKLTKLDVSQVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNIT--KLDLNQNIQLTFLDCSSNK--------LTEIDVTPLTQLTYFDCSVNPLTELD............................................................................................................................................................................................................................................................................................................................. 300
25 -27.200IDP02440 hypothetical protein lmo0331 [Listeria monocytogenes EGD-e] lmo0331 [Listeria monocytogenes EGD-e]  ali follow..  16  38..ENQLLKTDLKETPKEKT------PNNNLKNQLVQAGTKTYNDYFPDDNLAKEVAETMNKNADESVTVEELAKVTKLDARSQIEDSTGIEYLTGLEVLNLEDNQLKSIDVSKNLNLKELTCSNNPLAN----DVSKNLALEELTCENNELTQLDVSQNTALEQLTKLDVSKNSALRYLADVSKNPALTNLGCTKNQLTDLD-VSQNPNLGTLVCSDNQLT--NLDVSQNQALENLACDNNE--------LKNIDINQALSLKELSCENNQLTNLD............................................................................................................................................................................................................................................................................................................................. 308
26 -27.000CPX_91662_05666 Complex of CADH1_HUMAN with INLA_LISMO [Undefined organism]  ali follow..  17 1010....................................MNNNQIADITPLANLTNLTGLTLFNNQITDIDPKNLTNLNRLELSSNISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLE-------DISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNASYTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKAIFNVKFHVDGKETTKEVEAKEGHTFVGWFDAQTGGTKWNFSTDKMPTNDINLYAQFSINSYTATFDNDGVTTSQTVDYQGLLQEPTAPTKEGYTFKGWYDAKTGGDYTATFDVATDKMPANDITLYAQFTKNPVAPPTTGGNTPPTTNNGGNTTPPSANIPGSDTSNTSTGNSASTTSTMNA-NSKEASLPTTGDSDNALYLLLGLLAVGTAMALTKK 1678
27 -24.900IDP91625 gene: ECs2073; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB35496 [Escherichia coli O157:H7 str. Sakai]  ali follow..  15  39.LTGEIHRPECRNEAAKRINCAFLSKQNDIDLSGLNLSTQ-------PPGLQNFTSINLDNNQLTHFDATNYDRLVKLSLNSNLESINHQGRNVSITHISMNNNCLRNIDIDRLSSITYFSAAHNKLEF----QLESCEWLQYLNLSHNQLTDI---VTGNKEELLLLDLSHNK-LASLH-NALFPNLNTLLINNNLLSEIKMYSNFCKVQTLNAANNQLEINLHFLTYLSSIKSLRLDNNKITR-----IDTENTSDIRSLFPIIKKSESLNFL.............................................................................................................................................................................................................................................................................................................................. 296
28 -20.300IDP92552 gene: NOD2; nucleotide-binding oligomerization domain-containing protein 2 [Homo sapiens] NP_071445 [Homo sapiens]  ali follow..  19  759ARGLNVGHLKLTFCSVGAALAFVLQHLRRPVALQLDYNSVGDI-----PCLGVCKALYLRDNNISDRGICKLEQLQKLALFNNKLTDGCAHSMQNFLALRLGNNYITAEGLRGNTSLQFLGFWGNRVGDEGAQALAEAQSLRWLSLVGNNIGSVGAQALALMVMLEELCLEENEGVCSLAELKKNSSLKILKLSNNCITYLQALERNDTILEVWLRGNTFSLEEVD............................................................................................................................................................................................................................................................................................................................................................................... 1029
29 -19.000IDP01916 hypothetical protein lmo0327 [Listeria monocytogenes EGD-e] lmo0327 [Listeria monocytogenes EGD-e]  ali follow..  15  1...............MLKKIFIALIALVVIINTVSFTSV--------SASTPTWLEQTMNNNE------PFIKEIET-ETGKTRANITQTD-LEAITALRVTGASDIPANIDMLTHLTLLKAVQGTIS-SVPNSVGNLKELKILNLNTNHLSNF--TIVYQLPKLEELQLNDGT-IEEIPA-NMASHLKFLTVNNNRLVKVP....................................................................................................................................................................................................................................................................................................................................................................................................... 170
30 -18.900IDP91701 gene: SLIT3; slit homolog 3 protein precursor [Homo sapiens] NP_003053 [Homo sapiens]  ali follow..  15  61...RNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPEQSTPKLTRLDLSENIQGIPRFRGITDVKNLQLDNNCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYDCRGKGLMEIPGIVEIRLEQNS-IKAIPAFTQYKKLKRIDISKNQISDIAPFQGLKSLTSLVLYGNKIEIAKGLFDGLVSLQLLLLNANKIN------LRVNTFQDLQNLNLLSLYDNKLQTISK............................................................................................................................................................................................................................................................................................................................ 420
31 -18.100IDP91619 gene: ECs2672; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36095 [Escherichia coli O157:H7 str. Sakai]  ali follow..  11  124IAELLDKLTKITDARLCKGFSDWASSVKEGASNDLKENVDRALVRMFKCVKLHSNELNLSSLSLGSV-PPLPEWIEMLSLVYN--ELDSIQVPESCKELELDFNNLTEFP-QVPDGITLISVNNNLISY------SFPPKAKKIFICHNKLSEI-----ALPDTAKVFDCSENN-IKEIRWF--PKNLKEAYIEYNKIEVIPAI--PGNLKLLCMKCNPIKEAFLMPWTLTGIRYEISQRKYIVM---NPADYDKYSDMVKK........................................................................................................................................................................................................................................................................................................................................... 365
32 -17.500IDP91618 gene: ECs2674; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36097 [Escherichia coli O157:H7 str. Sakai]  ali follow..  13  175...................................................LHSNELDLSYLFLGSV-PPLPDWIEMLSLVYN--ELDSIQVPESCKELELDFN--NLTEFPQVDGITLISVNNNLISH------SFPPKAKKIFISHNKLSET-----AIPDTAKVFDCGYNK-IQEIRYF--PKNLKEARIGYNNIEVVPAI--PGNLKILFMECNPIKEAFLMPWTLTGICYEISQRKYI.............................................................................................................................................................................................................................................................................................................................................................. 349
33 -14.100IDP91566 gene: ECs1568; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34991 [Escherichia coli O157:H7 str. Sakai]  ali follow..  16  1..................MLPTSQLRPT--YSAETSADIKSEITPIQIEEARASGRLYIKDCDIEYL-PQLPNEITSVTIE-NCNNLTTLTGLVNTQNLSVIN--CEKLQITDMSTVKNLHIELTDSP-----FIHFISGIECLTVCHCYISGV-PESVRYLNGLSSLSINSYNPENQARDNLISPSLKTLSLTGCS--NIILPEKLESVTSVTIHAEQKTTWNIGVEGMPDGLDLDLQ.................................................................................................................................................................................................................................................................................................................................................................. 231
34 -13.800IDP05226 putative membrane associated lipoprotein [Listeria monocytogenes EGD-e] lmo0460 [Listeria monocytogenes EGD-e]  ali follow..  13  160........................TVLESVRIERSNLSRVTSFAAFYSSGIEKVIIRDNNYPTAPSLLTKNCSNLMEVDLSSAVTTMWDMNSCRALEELDVSHDTSSVTNMSYMRNLEVLDVSNLDTSS--VTNMYAMTSLEELDVSHSSVTDMY-RVFNGCEKLKKLDVSN--DTSSATAMVQMSALEKLDVSNFNTSLVTDMRAMTSLEALDVSNSSVTNMAAMFSDNEKVEKLDLSTFDTSSVTNMGTMFKNCTALKSLY.......................................................................................................................................................................................................................................................................................................................................... 428
35 -12.800IDP05657 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0175 [Listeria monocytogenes EGD-e]  ali follow..  19  183....................................................................................................................................................................................................................................................................................................................................................................AEETEITYSPGSDVTEEQFLTDIHASVTTISLTSNFTSAVNLAVSGDYSVNVQATDKAGNVSNTLNVTVHVSTPAPVAGANITV----------NHLDSNGNKIAESDTLTGVVNSNYQSESTG-YTLETTPTNATGTFTDTPQTVDYIYKKDTV-----TPTPITVNPVEPVKPVNPVVNKPVTVKPANDNTNPSTSNSVEKTTYSSLPTTGDTDQSKSSTGALLLLISAPLLLFK 413
36 -11.500IDP91710 gene: NXF1; nuclear RNA export factor 1 isoform 1 [Homo sapiens] NP_006353 [Homo sapiens]  ali follow..  18  202................................................................NELKPEQVEQLKLIDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIE----------------ENIPELLSLNLSNNRLYR--LDDMSSIPNLKILNLSGNE-LKSERELDKIKKLEELWLDGNSLCDTFRRERFPKLLRLD........................................................................................................................................................................................................................................................................................................................................................................................... 352
37 -10.800CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]  ali follow..  18  202................................................................NELKPEQVEQLKLIDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIE----------------ENIPELLSLNLSNNRLYR--LDDMSSIPNLKILNLSGNE-LKSERELDKIKKLEELWLDGNSLCD-AIRERFPKLLRLD........................................................................................................................................................................................................................................................................................................................................................................................... 352
38 -10.800IDP05555 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo1413 [Listeria monocytogenes EGD-e]  ali follow..  18  286................................................................................................................................................................................................................................................................................................................................................................................................................................................................TVTYKDTKGNQLADPVILKGDIGSTFETEAKG-YKLTKTPSNHSSVFTSDSQEVEYVSKDDAVITPPVTPVNPDKPIINPVKPVNPATSTVPNKNISKKNTTKTVNQTGKTSTALQLPKTGDSENNLPLIIGVSLLISGVYIFRK 436
39 -10.200IDP05200 pepdidoglycan bound protein [Listeria monocytogenes EGD-e] lmo2714 [Listeria monocytogenes EGD-e]  ali follow..  11  104........................................................................................................................................................................................................................................................................................................................................................................................LTDYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDNEDGKTTAKLNYLVKEKTAQLTITDMNFDLETKIFTGKTKPFASVYMSSPADENFG---EGTTTADKDGYFYAEWATTPKQ-------ITAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKTEWIFVVAGVIVILVAVLLLRK 312
40 -9.950IDP91950 beta-N-acetylhexosaminidase [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100006639 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  714..................................................................LTQAEVTELIEYAKSKDIGLIPAINSLVAMEKLGIKNPQAHFDKVSK----TTMDLKNEEAMNFVKALIGKYMDFKIFNFGTDEYANDATSA-QGWYYLKWYQLYGKFAANTLAAMAKERGLQPMAFNDGFYYEDKDDVQFDK-KFLNTNGDWYPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFADHNKDYFRANYNALREELAKIPTNLEGYSKESLEALDAAKTALNYNLNRNKQAELDTLVANLKAALQGLKPAATHSGSLDENEVAANVET---------RPELITRTEEIPFEVIKKENPNLPAGQENIITAGVKGERTHYISVLTENGKTTETVLDSQVTKENQVVEVGAPVTHKGDESGLAPTTEVKPRLDIQKEEIPFTTVTRENPLLLKGKTQVITKGVNGDGKEVKTLVNSVVAQEAVTQIVEVGTMVTHVGDENGQAAPKLEIPSQPAPSTAPAEESKALPQDPAPVVIEKKLPETGTHDSAGLVVAGLMATLAAYGLTKR 1309
41 -9.300IDP05655 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0159 [Listeria monocytogenes EGD-e]  ali follow..  12  337..................................................................................................................................................TKATLEGA---------EFKLVDSKGTVLQENITT-SGQLSIADLKFDTYQLIETKALDTTPVEFTIGENNQAITVTKENTLNTGSVELTKLDAATKATLAGATFELQDKEGNTLQTDLKTDENGVLKVTDLVPGS-----------------QFVETSAPTGYKLDNSPVSFEVIAGETDQVVKVTKENTLEVGSVELTKLDSATKATLAGATFELQDKEGNTLQTDLKTDENGVLKVTDLVPGSYQFVETSAPTGYKLDNSPVSFEVVAGETDQVVKVTKENTLEVGSVELTKLDSAT-ATFELQDKEGNTLQTGLTTDENGVLKVTDLVPGTYQFVETKAPIGYELDTTPVSFEIVAGETDPIVKVTKENTLVPPTPVPPTPVPPTPVPPTPVPPTPLPPVPYEPKTTPIRITQSLPKTGDTNSFAGLGVILIALSLSGLLLKR 792
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.