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Query: IDP02818 gene: pyrC; dihydroorotase [Bacillus anthracis str. `Ames Ancestor`] GBAA4027 [Bacillus anthracis str. `Ames Ancestor`], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENITADNAEVIDVNGKLIAPGLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTDFETLKELGAFAFTDDGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEGKFSEKHGLNGIPSVCESVHIARDILLAEAADCHYHVCHVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKAQGIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGLEAGRLKEGRTADITIIDLEQEEEIDPTTFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKESALVLast
1 -130.000IDP02818 gene: pyrC; dihydroorotase [Bacillus anthracis str. `Ames Ancestor`] GBAA4027 [Bacillus anthracis str. `Ames Ancestor`]  ali  100  1MNYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENITADNAEVIDVNGKLIAPGLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTDFETLKELGAFAFTDDGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEGKFSEKHGLNGIPSVCESVHIARDILLAEAADCHYHVCHVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKAQGIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGLEAGRLKEGRTADITIIDLEQEEEIDPTTFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKESALV 428
2 -125.000IDP00795 gene: pyrC; dihydroorotase SACOL1213 [Staphylococcus aureus subsp. aureus COL]  ali follow..  61  2..KLIKNGKVLQNGEL-QQADILIDGKVIKQIAPAIESNGVDIIDAKGHFVSPGFVDVHVHLREPGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVLPYASITTRQLGKELVDFPALVKEGAFAFTDDGVGVQTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKAQPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNLEYGTLKENGYADLTIIDLDSEQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEVKFEGDK... 424
3 -77.700IDP00873 gene: pyrC; dihydroorotase STM1163 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  18  1..........................................MTAPSQVLKIRRPDDWHVHLRD------GDMLKTVVPYTSEIYGRAIVMPNLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCYLRGFHEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKLGIPLLVHGEVTHA---------------DVDIFDREARFIDTVMEPLRQRLTALKVVFEHITTKDAAQYVRDGND---YLAATITPQHLMFNRNDMGGIRPHLYCLPILKRNIHQQALRELVASGFTRALGTDSAPHSRHRK--ETSCGCAGCFNAPSALGSYAAVF--EEMNALAHFEAFCSLNGPQFYGLP------MNTGWVELVR--DEQQIPGNIALADDSLVPFLGETVRWSVKK................ 348
4 -77.100IDP90537 RecName: Full=Dihydroorotase; Short=DHOase Q9KL24 [Vibrio cholerae]  ali follow..  19  2...............................................TTLTITRPDDWHVHLRDGD------VLADTVRDISRYNGRALIMPNTVPPVTTTEMALAYRERIMAAQPQAHFEPLMALYLTDNTSPEEIRKAKASGKVATTNSDSGVTSAKNIYPVLQAMQEVGMLLLVHGEVTTH---------------EVDIFDREKTFLDTVLAPIVNDFPQLKIVLEHITTADAVTFVQQA---GDNVAATITAHHLLFNRNHMGGIRPHFYCLPILKRATHQHALVAAATSGSKKFLGTDSAPHAKGRKEAA--CGCAGSYTAHAALELYAE--VFEKEGKLENLEAFASFNGPDFYGLP--------RNQETVTLTKQAWPVAESMPFGSDIVVPIRGENIEWTV.................. 341
5 -76.500IDP04461 gene: pyrC; dihydroorotase [Yersinia pestis CO92] YPO1587 [Yersinia pestis CO92]  ali follow..  17  1..........................................MTAQPQTLKIRRPDDWHIHLRDDE------MLSTVLPYTSEVFARAIVMPNLAQPITTVASAIAYRERILAAVPAGHKFTCYLTNSLDAKELTTGFEQGVFTAAATTNSTHGVSDIPAIYPLFEQMQKIGMPLLIHGEVTDA---------------AVDIFDREARFIDQILEPIRQKFPELKIVFEHITTKDAADYVLAGNR---FLGATVTPQHLMFNRNHMGGIRPHLFCLPILKRSTHQQALRAAVASGSDRFLGTDSAPHAKHRKE--SSCGCAGVFNAPAALPAYASVF--EELNALQHLEAFCALNGPRFYGLP--------VNDDVVELVRTPFLQPEEIPLGNESVIPFAGQTLNWSVKR................ 348
6 -75.400IDP90750 gene: pyrC; dihydroorotase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0259 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  20  1.................................................MKLKNPLDMHLHLRDNQMLELIA------PLSARDFCAAVIMPNLIPPLCNLEDLKAYKMRILKCKDENFTPLMTLFFKNYDEKFLYSAKLYPAGITTNSNGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKL-------------------AKHFPRLKIVMEHITTKTLCELLKDYE----NLYATITLHHLIITLDDVGKMNPHLFCKPIAKRYEDKEALCELAFSGYEKVFGSDSAPHPKDTK--ECCGCAAGVFSAPVILPVLAE--LFKQNSSEENLQKFLSDNTCKIYDLKF-------KEDKILTLEEKEWQVPNVYEDKYNQVVPYAGEILKFQLK................. 334
7 -44.400IDP01088 gene: iadA; isoaspartyl dipeptidase STM4512 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  8EFTLLQGAHLFAPED-RGICDVLLANGKIIAVGAGIPGDDCTVINLSGRMLCPGFIDQHVHLIGGGGEAGPTTRTPEVSLTEAGITTVVGLLGTDSVSRHPASLLAKTRALNEEGITAWMLTGAYHVPSP--------------------------------------------TITGSVEKDVALIDRVIGVKCAVSDHRSAAPSGNQLASMAAESRVGGLLGGKSVFHMGSSKKGLQPLYDILENSDVPIGKLLPTHVNRSESLFEQ--TTSIPDPVAPAEGIARAVKAGVPLSRVTLSSDGNGSQPLFDAAGNLTGIGVAGF---ESLLETLQTLVNHYGFSLANALRPLTTSVAAFLSLDKGEIRPGNDADLLVFSADLR-------------------------IEQVYARGKRMVNEGKACV 383
8 -25.300IDP04718 putative acetylglucosamine-6-phosphate deacetylase [Yersinia pestis CO92] YPO0838 [Yersinia pestis CO92]  ali follow..  13  1MRTAYLADRTFTPQGIETGVAVIVEQGEIVAVTREL-PADAEIVHLTGKTLIPGLIDIHIH--DVMDASAEALRTIARALPQTGVVAWVGTTVSAPIQDIFAALAQVRDFIADPDNARDTRTATLL-FLEGPYFTA----PFRGS---PEKYLTTPTPQELEQLRHSAGNTLLRAAIAPESPEALA--------IRWLVNHGIKTSVAHTAANFEQVTAAYQQGAD-CGVHLYNGMS-----HHREPGCCGAVLYHDMLAELIADGIHVHPVMMNLAYRMKGYRRIALITDCMRAGGLGEGRYLLGAQHITVRQGEARTDDGSLAGSTCSLDQALRNMIQHAQVPEWEAVQMASAVPAAYLGLTLGSIQMGAQASMVVMESDFT-------------------------VAATLIKGEWAYRHSA... 388
9 -24.800IDP00657 gene: nagA; N-acetylglucosamine-6-phosphate deacetylase SACOL0761 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  3.ELIIYNGKVYTEDGKIDNGYIHVKDGQIVAIGEVDDTNKIQVIDAKGHHVLPGFIDIHIH--DAMDGSYDGLKYLSENLLSEGTTSYLATTMTQSTDKIDNALTNIAKYEAEQDVHNAAEIVGI--HLEGPFISE----NKVGA---HPQYVVRPFIDKIKHFQETANGLIKIMTFAPEVEGAKEALETYKDDIIFSIGHTVATYEEAVEAVERGAK---------HVTHLYNAATPFQHREPGVFGAAWLNDALHTEMIVDGTHSHP--ASVAIAYRMKGNERFYLITDAMRAKGMPEGEYDLGGQKVTVQSQQARLANGALAGSILKMNHGLRNLISFTGDTLDHLWRVTSLNQAIALGIRKGSIKVNKDADLVILDDDMN-------------------------VKSTIKQGKVHTF...... 392
10 -24.800IDP04464 gene: hutI; imidazolonepropionase [Yersinia pestis CO92] YPO1972 [Yersinia pestis CO92]  ali follow..  16  7CDSLWFGADIITMRGGIPQGAIAVTGDKIVWIGPHAELPAARQVVYEGGLITPGLIDCHTHLVFGDDRSNEGVSYAEIAANGGGIISTVR--------ATRQASEQQLLEQALFRLKPLLAEGVTTEIKSGYGLNLESEIKMLRVARRLGELLPIDVKTTCLAAHALPPEFIGQPDDYIDVVCNSIIPQVAVENLADAVDAFCEHLAFSPAQVERVFLAAQKAGLPVKL-HAEQLSALRGATLAAKFHA-----SADHLEYATESDVQNAGTVAVLLPGAYRETQCPPIDLFRQYKVPMALASDANPGTSPVLS----------------LRLMLNMACTLFRMTPEEALAGVTCHAAQALGVQQGTLETGKLANWVHWPLSHPAELAYWLGGQL--------------PATVVFRGEV......... 404
11 -23.100IDP04112 gene: nagA; putative N-acetylglucosamine-6-phosphate deacetylase [Yersinia pestis CO92] YPO2626 [Yersinia pestis CO92]  ali follow..  14  3...ALTHGRIYTSHEVLDNHAVVVADGLIERICPVDEPAGIEICDLGGAILAPGFIDVQLNNDSLEAISAETLDIMQRANEKSGCTSFLPTLITCSDEFMKHGVDVMRSYLQKNQH------QALGLHLEGPYISP----LKKGT---HNPAFIRKPSAEMIDYLCANADVITKLTLAPEMVDPKYIQQLTEAGILVSAGHSNATYQQARQGFTAGIR---------FATHLYNAMPYISGREPGLIGAIFDTPEVYTGVIADGLHVDW----ANIRNAKRLKGEKLVLVTGAKIEQFIF-----AGKTIYYRDGLCVDENGTLSGSALTMIEAVQNSVEHVGIALDEALRMATLYAARAIGVQLGSIEVGKVANLTAFTRDYK-------------------------ITKTIVNGNEVLS...... 381
12 -22.800IDP01334 gene: nagA; N-acetylglucosamine-6-phosphate deacetylase VC0994 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  2..YALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESPSEMNVVDLNGANLSPGFIDLQLNVMFNDEITAETIDTMHKANLKSGCTSFLPTLITSSDENMRQAIAAAREYQAKYPN------QSLGLHLEGPYLNV----MKKGI---HSVDFIRPSDDTMIDTICANSDVIAKVTLAPENNKPEHIEKLVKAGIVVSIGHTNATYSEARKSFESGIT---------FATHLFNAMTPMVGREPGVVGAIYDTPEVYAGIIADGFHVDY----ANIRIAHKIKGEKLVLVTGAEMDYFIF-----VGKKVYYRDGKCVDENGTLGGSALTMIEAVQNTVEHVGIALDEALRMATLYPAKAIGVKLGRIKKGMIANLTVFDRDFN-------------------------VKATVVNGQYEQN...... 378
13 -22.700IDP02603 gene: nagA; N-acetylglucosamine-6-phosphate deacetylase [Bacillus anthracis str. `Ames Ancestor`] GBAA4274 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  3.TQVVINAKIYTGQE-VVENGFIRYAETIKEIGLMAQQENETVLDAAGKIVIPGMIDVHIH--DAMDANSDGLVTLGKEMLKEGVTTYFPTTMTQAPEAIEAALHAAKEAKEKGAHF-------EYIHLEGPYVSK----KRAGA---PLEHIVPANIEQFKQWQEASGNLIKLVTYAPE-----------EGALEFEQYLAETGVVGTMGHTDAIDAQLKNRNIT-HATHLYNQMRGLHHREPGVVGHVLLNPDVMVEVITDGIHIHP--DMVKLAYKLKGPKKVSVITDAMRAKGLEDGLYELGGQPVHVKDGSARLEDGTLAGSILKMDQAFRNVIEFTGCSIEDAVLMTSVNQAEEFGLNKGALAVGKDADFVVMNEDLH-------------------------VYDTVRLGIHMKEG..... 379
14 -21.800IDP00351 gene: adeC; hypothetical protein lmo1742 lmo1742 [Listeria monocytogenes EGD-e]  ali follow..  20  22.DLVIKNGRIINVSGEIMDGDIAIKNGYIAGIGS--FPDAEKIIDAAGAFIAPGFIDAHVHVESAMVTPAE-----ARVLLPNGVTTIVTDPHEIANVAGEKGIEFMLEDAKGAPLDMFVMLPSSVPATEGEHAEKLHPLYRIGLAEVMDFPSVAKGSDDILRKIIDAKKEGGRIDGHGAG----------TSADLNNYLAVGIRTDHESTTAKEATDRLRA-GMFVMLREGTVGRDLLQT-------IPAVSEKNSHRFCFCTDDKLIND---------------------ITEGSINYN---------------------------------IKLAIKNG-IDPITAIQMATINAANCHNLPYGAVAAGYQADIVFLTDIETVE-----------------------ISKVLKNGEVVVDNGVRNE 360
15 -17.800IDP00467 N-formimino-L-glutamate deiminase YPO1974 [Yersinia pestis CO92]  ali follow..  10  1MPVYFTKRAFLPDGWAADVQIAVDELGDIQRISTG---SSSSGCQVLSGPVLPGMPNLHSHAFQ-GLAEPEQVGVIARQLLKGGYTQVAEFPDGSPYNDIGEMTAQLSQAAQDAGI------MTLLPVLYSYAGFGAQPAQQGQSRFIQDTESYLRQQQVIRRQLANQPLQNQGLCFHS-------------------------LRAVELSQMQQILHVSDK-QLPVHI-HIAEQQGQRPVAWLYGHLPVDSRWCLVHATHLDTSELVNSQAVAGLCP-ANLGDGIFPGVDYIHHQGRWGIGSD------SHVSLDVVEELRWLEYGQRLRDQRRNRLTCERQPAVADLLSQALAGGRQACGRQISQLAVGYRADWLVLD------GDDPYIAGTRSASLLNRWLFAGGIRDVYVAGKAVIVDRYHP. 436
16 -9.080IDP00957 gene: ycfH; predicted metallodependent hydrolase STM1202 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  3......................................................LVDSHCHLDGLDYQSHKDVDDVLAKAAARDVKFCLAVATTLPGYRHMRKLVGKRDNVVFSCGVHPLNQDEAYDVEELRLLADVVAMGETGLDYFYTPETKIRQQASFIHHIQIGRELHKPVIVHTRD------------------------ARADTLAILREEKVTDCGG----VLHCFT-EDRETAGKLLDLGFYISFS------IVTFRNAEQLRDAARYVPLDR------------------LVETD-SPYLAPVPHR-------GKENQPAMVRDVAEYMAVLKGVAVEELAQITTDNFARLFHIDASRLS........................................................... 262

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.