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Query: IDP02828 hypothetical protein GBAA4243 [Bacillus anthracis str. `Ames Ancestor`] GBAA4243 [Bacillus anthracis str. `Ames Ancestor`], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDPYVNICICITPGADISDDRVAKDLAVAESIWHPITFQIQEVIVLNELFRFSDREISYKDSIQSQEKLASFFQTCVNEAPECDLYICYIGSDYFKETAVIACAYSLAKQQQLTGYIVLTNSAAPMKNIYTLAHEIGHILFTRRVHGKLTHADPHSPTGSEHHPSPTNLMYPIVPRPENVHIQSLLTSEQKALSLQSSLLQRKKQLast
1 -97.200IDP02828 hypothetical protein GBAA4243 [Bacillus anthracis str. `Ames Ancestor`] GBAA4243 [Bacillus anthracis str. `Ames Ancestor`]  ali  100  1MDPYVNICICITPGADISDDRVAKDLAVAESIWHPITFQIQEVIVLNELFRFSDREISYKDSIQSQEKLASFFQTCVNEAPECDLYICYIGSDYFKETAVIACAYSLAKQQQLTGYIVLTNSAAPMKNIYTLAHEIGHILFTRRVHGKLTHADPHSPTGSEHHPSPTNLMYPIVPRPENVHIQSLLTSEQKALSLQSSLLQRKKQ 205
2 -19.800IDP02151 hypothetical protein GBAA3159 [Bacillus anthracis str. `Ames Ancestor`] GBAA3159 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  38.....SATYKWGDRLDDGSSIIKSGWQAADSAWYTAS------------------------------------RINFTVSASSVNTLNSWFESSSTYYGRMKTSYNTSTKKVTKFAGDINAGNTNITKSNTGVHEFGHAIGIGHN-------------------SGTSIMNSNRNRTTMH----VPQTDDKNGVNA......... 173
3 -19.000IDP05689 putative cellsurface protein [Listeria monocytogenes EGD-e] lmo1654 [Listeria monocytogenes EGD-e]  ali follow..  12  46.................GNSKYMSFIQSGANTWNAYK---------------------------------KGVIRPASGANKSDVYCSDISANNNINATTYSNGKITFNKKNM-------DKKNNAGKQNVATHELGHGLRLGHN-------------------ASSDVMYQYSTS------KTTLSTNDKQSYDA......... 159
4 -14.800IDP91447 ribosomal protein L22 [Vibrio vulnificus CMCP6] VV1_0393 [Vibrio vulnificus CMCP6]  ali follow..  14  77....................................................................................................................MTVNSLHHPHRQRFTIAHEIAHRIRHAANNDCFEDTTFFRNGETNWMEAEANLMPKDAFDNFIANVSSKVEDAMHFQVSSHAVRIRAKV 172
5 -12.600IDP01176 peptidase, putative BA_2869 [Bacillus anthracis str. Ames]  ali follow..  11  34...................NATEENLDKLVSALNVYKKGKISITWHEIMTVKENNEAIIPFSVAVQNIYGELAELARNAIESGWVDAE-------PRENKPPGGFCAPFFSEKESRISMR--DGSIDSVRILAHELGHAWHNMSFEQSSSFLDDYLPMSTAESASIFFLINYLIQTTDSIDIKKSLLSWKIRNCFNYVM...... 217
6 -12.000IDP91565 gene: ECs0850; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34273 [Escherichia coli O157:H7 str. Sakai]  ali follow..  6  42........LRFQGTDHNIYQQIEAALDKIGS----------------------------------TETGRVLLNAIESISRLKSETVVIHLNSSRLGVMAHRDIDAENHRGTGSDFHCNLNAVEYPCGEGIVFHELLHVFHNLNGERLKVESSRAESQKYSPLLLEEARTVGLGAFSEEVLSENKFHEEIGMPRRTS........ 205
7 -11.300IDP01133 oligoendopeptidase F, putative BA_1353 [Bacillus anthracis str. Ames]  ali follow..  10  212FKNFVELGYARMYRTDYNAEMVANYRQQVLDYIVPV-IGVEKLAYYDENFEFPTGNPTPKGDADWIVNHGKTMYKELSAETDEFFNFMLDNDDLVAKKGKAGGGYCTYIENYKAPFIFSN--NGTSGDIDVLTHEAGHAFQVYESRKFEIPEYNWPTYEACEIHSMMEFFTWPWMKLFFEEDADKYYFSHLSSALLF........ 420
8 -11.200IDP02427 gene: pepF-2; oligoendopeptidase F [Bacillus anthracis str. `Ames Ancestor`] GBAA3553 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  260.............GDMVPKEVYENLIETTKK-LRKEKLNVDELRQYDLSVDLVQGVKQDIPYDNAFDIMIESLAPLGEEYIETLKSFKDKRYIDVRETPGKCSGAYNFGVYGVHPFILLN--HDDLNSLFTLTHECGHGMHTHYSHGYQPRISAHYTIFVAEVASTVNLIHHLLKEAKDANVRNHLVNHFIEKFKGTFF...... 456
9 -11.100IDP01872 oligoendopeptidase F, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA5706 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  264...........LEPQNVPLEMYNNQLDIIYKELAPH-LGLDQMLFCDLHAPLDPEFNPAITYEEAGKLIQDSLQVLGDEYSAIIKKGFKERWVDLADNVGKSTGAFCSSPYGSHPYILIT--QNTMRGCFTLAHEFGHAGHFYLANKNQRIMNVRPSMYFVEAPSTMNLAQHLLATTDDKRMRRWVILQLLGTYYHNFV...... 463
10 -11.000IDP06297 oligoendopeptidase F [Streptococcus pneumoniae TIGR4] NP_345460 [Streptococcus pneumoniae TIGR4]  ali follow..  10  259.............ANFVPESVYDNLVAAVRKHLKILGISDLKMYDVYTPLSSVEYSFTYQEALKKAEDALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAF----MLLNWQDNLDNLFTLVHETGHSMHSSYTRETQPYVYGDYSIFLAEIASTTNLTEKLLEEVEDDATRFAILNNFLDGFRGTVF...... 454
11 -10.900IDP00800 oligoendopeptidase F, putative SACOL1419 [Staphylococcus aureus subsp. aureus COL]  ali follow..  8  258.............SQEVTRDMFDRQIDMIMRDLAPV-HGLDNMRFEDLKISVDPDYEPEISIEDSKNYIFGALSVLGDDYTNMLREAYDQRWIDFAQNKGKDTGAFCASPYFTHSYVFIS--TGKMAEAFVLAHELGHAGHFTLAQKHQPYLESEASMYFVEAPSTMNMANYLFNTSDNPRFKRWIIGSILSRTYYHNMVTH... 458
12 -10.900IDP02335 hypothetical protein GBAA2583 [Bacillus anthracis str. `Ames Ancestor`] GBAA2583 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  9  210LENYRDYMFKKYERFDYSAKDCYELAESIRKYVVPLQVDTLRPWDVSAVTPDQKVLKPIANENDLIEKSTHIFNKLDVEFSTLLNRMYKHDCLDLTSRKGKAAGGFCEYLPASQLSYIFMNLNYTQDDIITFIHEMGHSIHNELIKPLKLRQYIEIPAETAELANMTMSLNYWDTFYTDKKDLKQAKINYFKDVISY........ 421
13 -10.800IDP01172 gene: pepF-1; oligoendopeptidase F BA_1206 [Bacillus anthracis str. Ames]  ali follow..  11  267.............NNNIPEAVYDQLIESVND-IRKRALGLDELHMYDLYTPLVPEVKMNVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMN--HDNVNNLFTLAHEFGHSVHSYYTRKTQPHVYGDYSIFVAEVASTCNLNDYLLKTTEDKKERLYLLNHYLEGFRGTVF...... 463
14 -10.700IDP06067 gene: pepF; oligopeptidase [Helicobacter pylori J99] NP_223140 [Helicobacter pylori J99]  ali follow..  12  241.............DNQISQESVDSMIEIVNANFSKAQILGHKLKDYDRYAPLNDESITMTYSQALEEVLKEFHKIASKAIKEGWVDSH-------PKDFKQGGAFSHGAVPSAHPYVLLN--TGNRRDAFTIAHEFGHMI---HQELSKKQGNMDTPLTTAETASVEMLFFEHLKKGLKSDELLFMLAGKLEDIFSTLF...... 434
15 -10.400IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames]  ali follow..  10  204.............GNEPYTLFDGSKVKTFKQYYEEQS-YVTEWLTVPGKASDYGADGSSGHDNKGPKGARDLVKEALHAAAEKGLD--LSQFDQFDRYDTNSDGNQNEPDGVIDHLMVIHAGVGQEAGGGVFAHEFGHDLGLPDEYDTKYTGTGSPVEA--------SLM................................... 408
16 -10.200IDP05145 hypothetical protein BAS4679 [Bacillus anthracis str. Sterne] BAS4679 [Bacillus anthracis str. Sterne]  ali follow..  12  109...............................................EDKEVKEEVLQQRQDRGYHEDLWDMYRTLIPAKYRGNITEFDLITDGYDGVVAHVMLSIENPKDWTLSLDTLDSAVNIDEVMKTLIHETAHVLTLGHK............................................................ 206
17 -9.950IDP00224 putative membrane protein YPO3058 [Yersinia pestis CO92]  ali follow..  16  76............TQDDQYAKFTSVILADTEDTWKPIFQKMGRTYQDPKLVMYRGATQTGCGTGQSVMGP------------PADSTIYIDLSFYEDMKN-------------------KLGAGGDFAQAYVIAHEVGH-----------------------HVQHLMGIDAKVRQQQQGVSQAEGNRLSVKMELQADCF...... 211
18 -9.760IDP01175 peptidase M3 family protein BA_2825 [Bacillus anthracis str. Ames]  ali follow..  13  325.....................................................................................................................VYSNFSPSFYAINALIHEVGHAF---HFYKQFKNDSREEVAELYSLSLELLVMDKLNVFYKQEDEYKEVQRVQIYRALSL........ 408
19 -9.740IDP00033 immune inhibitor A metalloprotease BA_1295 [Bacillus anthracis str. Ames]  ali follow..  8  199.............GDEPFTLDDGSKIETFKQYYEEQS-TVTKWLTVPGKAADYGADAATGHDNKGPKGPRDLVKDALKAAVDSGLD--LSEFDQFDQYDVNGDGNKNQPDGLIDHLMIIHAGVGQEAGGGVFAHEYGHDLGLPDEYDTQYSGHGEPVQA--------SIM................................... 403
20 -9.650IDP02340 hypothetical protein GBAA2884 [Bacillus anthracis str. `Ames Ancestor`] GBAA2884 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  8  2INNTIPNFLKLWESNEVELVALKKYFTSHPEIFEEYFKYHCPNTKERLSNAINLYPAKIEDIRIIAESLPIIIQEVTNAYHNVKMKFHLFVGGFGSNAFV------EREIIGDMFFAAEKLSPDLNHLRVIVAHEIGHIYHNVMLQNDGMD----------GKAEWADATVNLYREGIATYLSKQIIKGL............... 181
21 -9.290IDP00191 conserved hypothetical protein YPO0932 [Yersinia pestis CO92]  ali follow..  16  1...................................................MSTLRIPIALQQAVMQCLRHYLQLANQGTAYPEPKVNY-----HQRGTNAGSAYLQSFEIRLNPVLLLENKQPFIDE--VVPHELAHLL................................................................. 84
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.