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Query: IDP04002 gene: ipgA; IpgA, similarities to IpgE, putative chaperone [Shigella flexneri] CAC05806 [Shigella flexneri], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCRKLYDKLYEITGAKLDFNDKNQAFILLEEQIPVCITDNDEYIFLTGLLNEHELFTENIINPEHILILNYSLSRDYGSSICLLPDTHQCVLTKKHYKKYLSPDELIESLYEFLFCIKLTIANITSEVNLast
1 -60.900IDP04002 gene: ipgA; IpgA, similarities to IpgE, putative chaperone [Shigella flexneri] CAC05806 [Shigella flexneri]  ali  100  1MCRKLYDKLYEITGAKLDFNDKNQAFILLEEQIPVCITDNDEYIFLTGLLNEHELFTENIINPEHILILNYSLSRDYGSSICLLPDTHQCVLTKKHYKKYLSPDELIESLYEFLFCIKLTIANITSEVN 129
2 -48.100IDP90324 gene: sycE; secretion chaperone [Chlamydia trachomatis D/UW-3/CX] CT088 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  14  5.FEQLLTELGTQINSPLTPDSNNACIVRFGYNVQIEEDGNSGFLVAGVMLGKLPENTFRQKIFKAALSINGSPQSNIKGTLGYGEISNQLYLCDRLNMTYLNGEKLARYLVLFSQHANIWMQSISK... 132
3 -46.500IDP90410 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_663 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  13  1MLEKLIKNFVAYMGVALEFDADGSYVFPISSLVRMRVRNADEEIIISAFLGEIPASMDIEKAYARMMEGNLFGQETGGAALGLDSDGHAVLV--RRVPGEVSQEDFASYIESVLNYAEAWLEDLGLSKT 130
4 -44.700IDP04314 gene: YPCD1.73c; hypothetical protein YPCD1.73c [Yersinia pestis CO92] YPCD1.73c [Yersinia pestis CO92]  ali follow..  9  6.FTELLPKIASHFGLDLSQDEYGLCELILNDRVVIMLREILNRLTLLGPILGFSGPEARSAASQLFFCYSINALNKDGPCFAWSEELG-LIAFKHLSLDELNVENVSKEIANFYDWLSLVSLPAETQQE 135
5 -42.600IDP91487 putative type III export apparatus protein NosA [Vibrio parahaemolyticus RIMD 2210633] VP1697 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  18  1MLDKMMKSLAETLGIGFIAGENGAYTIEVDQ-LTLTIKQHSSWILWETALPLRFLDYQQEQALKRCMQLSLKTLRDTPSVLTTNAD-QQLILQGKAMIENTSNDQFAELLAQHANVCERYMEMLEHE.. 129
6 -38.500IDP91484 putative exoenzyme S synthesis protein C [Vibrio parahaemolyticus RIMD 2210633] VP1701 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  14  7.IDEVLQKFAHQIGLPELHLTDNELSLAFDDHLKVHFIPETNTLQLEAEIVGLQIV--NSDLYRSFLAFNYHW-PEHQLFFSLDNHRHVLCLNKLIGIEQLDYEYFENALAELLTQSESWESLLSAHVV 133
7 -35.800IDP91509 putative type III secretion protein [Vibrio parahaemolyticus RIMD 2210633] VP1665 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  14  3WIDASVDEFCRGMGLDVDFSAAGRVQLSFEQSGTLHIEKHHDRLFLM--LARALSWHQSGERIQHALRLCNAEQGWPFEMKTGLLDDETLVFSAKIEGDEVTLPTLEQAFALLVRLHDEVAS....... 123
8 -19.500IDP04306 gene: ipgE; IpgE, cytoplasmic chaperone for IpgD [Shigella flexneri] CAC05809 [Shigella flexneri]  ali follow..  11  1.MEDLADVICRALGIPLIDIDDQ--AIMLDDDVLIYIEKEGDSINLLCPFCALPENIND---LIYALSLNY----SEKICLATDDEGGNLIARLDLTGIN-EFEDVYVNTEYYISRVRWLKDEFARRM. 117
9 -16.200IDP93931 type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007703 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  11  8ALNSFLSTEGRQDLINSQLDCHSTIQLELNESPPINVDLLTDDIILWCSIAECQMGALGQNLLSELLEYTPGNFHIG--QPALSFRENTLVLSAILREPALDTQLFADSLNEFYERSHRFSTLLAG... 135
10 -5.800IDP00159 gene: tcpC; toxin co-regulated pilus biosynthesis outer membrane protein C VC0831 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  6  130.LAGFFDYLSSAYNMHFEFGHNNLVKAYHYKNQVFNLQQYFDDNKFSSSMQIGGTSGTSSGLKGTAIDEFLSASLGETGKFTIFEDYSLVTV-----------KARPDKFLLLHTFFDKLINESKMQI. 256
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;