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Query: IDP04040 gene: cotJC; spore coat protein CotJC [Clostridium perfringens ATCC 13124] CPF_1068 [Clostridium perfringens ATCC 13124], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MWYYVKTLEYPINLKCNDLRMAKFLISQYGGPDGELSAALRYLNQRYTMPTNKAKGLLTDIGTEEMAHVEMIATMIYQLMENASLEDLKKAGLAERYTDHGKALFYSDAQGNPWTATYIQAKGDVVADLHEDMAAEQKARATYQWLINLTDDQDIKEILRFLREREIVHFQRFGEALMDVQDKMKCKKLast
1 -84.800IDP04040 gene: cotJC; spore coat protein CotJC [Clostridium perfringens ATCC 13124] CPF_1068 [Clostridium perfringens ATCC 13124]  ali  100  1MWYYVKTLEYPINLKCNDLRMAKFLISQYGGPDGELSAALRYLNQRYTMPTNKAKGLLTDIGTEEMAHVEMIATMIYQLMENASLEDLKKAGLAERYTDHGKALFYSDAQGNPWTATYIQAKGDVVADLHEDMAAEQKARATYQWLINLTDDQDIKEILRFLREREIVHFQRFGEALMDVQDKMKCKK 188
2 -16.600IDP02347 gene: ftnA; ferritin [Yersinia pestis CO92] YPO1783 [Yersinia pestis CO92]  ali follow..  16  3.................KKEMAQKLNEQLN---LEFYSANLYLQMSAWCSDEGAAAFLKKHSQEEMQHMERLFEYLSGTGSMPVLGTITAPPVD----------------------------ASLADVFKLTYEHEQLITTQINELAHVAHDYSTFNFLQWYVAEQHEEEKLFKSILDKLA....... 142
3 -16.500IDP00977 gene: ftnB; ferritin-like protein STM1932 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  3.................AVGMVQKLNTPMN---LEFYASNLYLHLSEWCSEHSLTGTLRTQAQGNVTQMMRMFNFMKNAGATPIVKAIDVPGEE----------------------------CSLEELFQKTLEDYQQRASTLSRLADEANDASTLDFLHTLEKEQQQDGVLLQTILEEVR....... 142
4 -16.400IDP01358 ferritin VC0078 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  9.................SQAMVEHLNEQIN----EFFSSNLYLQMSAWCEDKGFDGALRAHAVEEMQHMQRLFTYVSETGALPILGAIAAPRHD----------------------------ASLGEVFRETYQHEQKITQQINKLAHVAQDYSTFNFLQWYVAEQHEEEKLFKGILDKLE....... 148
5 -16.100IDP01129 ferritin BA_5296 [Bacillus anthracis str. Ames]  ali follow..  12  3.................SKKLHDALNDQMN----EFYSAHAYMAMAAYCTAESYDGFFLVQAEEERFHAMKLYNYINDRGERAIITGFDNPNNE----------------------------ESVLNAFEVALEHEREVTKRIYNLSDIAREHATITFLKWFVDEQVEEEASFDSIIQKLK....... 142
6 -15.400IDP01318 DPS family protein VC0139 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  8  10..............TTQSQKLANALNNLLANYQVFYMNTRGYHWNIQGKEFFELHAKFEEIYTDLQLKIDELAERILTLSARPMHSFSGYLKAAQI--------------------KEHTDSIDGRSSMQGLVDGFSILLHQQRDILELAGDEGTSALMSDYIREQEKLVWMLNAWLK.......... 156
7 -15.300IDP00611 ferritins family protein SACOL1952 [Staphylococcus aureus subsp. aureus COL]  ali follow..  13  3.................SKNLLEALNDQMN----EYFAAHAYMAMAAYCDKESYEGFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKID----------------------------SSILETFKDSLSQEQEVTRRFYNLSEIAKDYATISFLNWFLDEQVEEESMFETHINYLT....... 142
8 -15.200IDP06252 non-heme iron-containing ferritin [Streptococcus pneumoniae TIGR4] NP_346019 [Streptococcus pneumoniae TIGR4]  ali follow..  9  26..............PVALAKTKEVLNQAVADLYVAHVALHQVHWYMHGRGFLVWHPKMDEYMEALDGQLDEISERLITLGGSPFSTLTEFLQNSEIEEEAGEYR-------------------NVEESLERVLVIYRYLSELFQKGLDVTDDDVTNGIFAGAKTETDKTIWMLAAELGQ......... 174
9 -13.300IDP90996 gene: dps; DNA starvation/stationary phase protection protein Dps [Yersinia pestis KIM 10] y1677 [Yersinia pestis KIM10+]  ali follow..  9  23..............EHVKVATIKRLNQMVIQFIDLSLITKQAHWNMRGANFVAVHEMLDGFRTALTDHLDTFAERAVQLGGVALGTAQVINDKTPL-------------------KSYPTNIHSVQEHLKALAERYAIVANDIRKAITEVEDENSADMFTAASRDLDKFLWFIESNIE.......... 167
10 -12.800IDP01964 bacterioferritin [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1534c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  11  2...................SVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSP-----------------VAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQG......... 145
11 -11.300IDP90989 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] y1222 [Yersinia pestis KIM10+]  ali follow..  10  51............TLTPHEQQLTIRVFTGLTLLD-TIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSEDNGPLQKKADII-----------SQHYHNDDPLKKKIASVFLE--SFLFYSGFYLPM--TNTADLIRLIIRDEAVHGYYIGYKFQKGLGKIDS.. 216
12 -11.200IDP02619 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. `Ames Ancestor`] GBAA1372 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  42............QLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVH-LENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRL---LKPEVTKKELYMAMVASVFLE--SYLFYSGFFYPLY-TASGEIINLIIRDESIHGVFVGILAQQIFAELSA.. 215
13 -10.800IDP06237 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae TIGR4] NP_345649 [Streptococcus pneumoniae TIGR4]  ali follow..  12  46............KLSNKEKDLVGKVFGGLTLLDT-MQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIV-----------NEIYLNGSPLEKKVASVFLE--TFLFYSGFFTPLY-ANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPE.. 211
14 -9.990IDP95259 ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ATCC 17978] YP_001083788 [Acinetobacter baumannii ATCC 17978]  ali follow..  10  83............GLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRH-ITNPECRQYILRQAFEEAIHTHAYQYCIESLGMDEGFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYCVLEYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQIKIENPH.. 261
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 0 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.