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Query: IDP04065 gene: yyaC; putative sporulation protein YyaC [Clostridium perfringens ATCC 13124] CPF_2985 [Clostridium perfringens ATCC 13124], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCTSFYINSLDPKASFKIRDYLCRELSPVIKENRPIVFICIGSDRSTGDALGPLIGEKIKFLSKNNIFIYGTLEETVHAGNLKETVKIIKSKHKKPFIIAIDACLGVVDNVGHVLIEKRPLKPGIALNKDLPEVGDLSILGIVNISGSLEFMVLQNTRLYTVMLLANAISNGIHHCILKSVGFKKNILDSTLENILLast
1 -82.000IDP04065 gene: yyaC; putative sporulation protein YyaC [Clostridium perfringens ATCC 13124] CPF_2985 [Clostridium perfringens ATCC 13124]  ali  100  1MCTSFYINSLDPKASFKIRDYLCRELSPVIKENRPIVFICIGSDRSTGDALGPLIGEKIKFLSKNNIFIYGTLEETVHAGNLKETVKIIKSKHKKPFIIAIDACLGVVDNVGHVLIEKRPLKPGIALNKDLPEVGDLSILGIVNISGSLEFMVLQNTRLYTVMLLANAISNGIHHCILKSVGFKKNILDSTLENIL 196
2 -69.100IDP04194 gene: yyaC; putative sporulation protein YyaC [Clostridium perfringens ATCC 13124] CPF_2444 [Clostridium perfringens ATCC 13124]  ali follow..  27  2..NKIKTYYKNYLAYYEISNFLKNHI------DEKTIIVCIGTDKCIGDCLGPLVGTLLREKFF-PLKVFGTLDSPIHALNLDKKITEILKTYPGYKILAIDACLGDSNSIGEIHARYEPIHPGKGVGKSLRSVGDMSIIAIVDSSENIDLFTSRPIRLSFILDMSKVIVDSLIHSYYLKNKKN............ 176
3 -50.800IDP04203 gene: gpr; germination protease [Clostridium perfringens ATCC 13124] CPF_2298 [Clostridium perfringens ATCC 13124]  ali follow..  16  68.....EYTHYDGGIMDEVSHVVAASLEELINEERTALVVGLGNWNVTPDAIGPKVVGKLMVTRHLKPDIIDDSVRPVCAIETGEIIKSLVEKINPDLVVCIDALASRKRVARTIQISNTGISPGAGVGNHRMQINEESLGIPVIALGVPTVVDAATIANDAMDLVLDEMINQADAG-KEFYNILNNIDKNEKGMMI 274
4 -47.700IDP01140 Germination protease precursor (Spore protease) (GPR endopeptidase) (Germination proteinase) BA_4546 [Bacillus anthracis str. Ames]  ali follow..  17  77.....GIRQQDTELQQKVERIFAKEFSYFLEKEASCLIVGLGNWNVTPDALGPIVVENVLVTRHLFPESVEEGFRPVSAIETSDVIYGIIEKTKPDFVIAIDAAARSIERVNTIQISDTGIHPGSGVGNKRKELSKETLGIPVIAIGVPTVVDAVSITSDTIDFILKHFGREMKEGNKPSRSLLPAGFTFGEKK.. 285
5 -12.600IDP01967 hydrogenase 1 maturation protease [Salmonella typhimurium LT2] STM1789 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  2...............................NAQRVVVMGLGNLLWADEGFGIRVAERLYARYHWPEEV-EIVDGGTQGLNLLGYVEQA------SHLLLLDAIDYGLAPGSLRTYAGEKIPAYLSAKKSLHQNSFSEVLALADIRGLPCHIALVGLQPALLDDYGGSLSEIARSQLPAAEQAALAQLAA...... 155
6 -12.600IDP01909 putative hydrogenase maturation protease [Salmonella typhimurium LT2] STM1536 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  2.................................AEVTILGLGNLLWADEGFGVRAAEKLFEQYADNEKV-DVVDGGTQGLALLPWLQQT------EKLLIMDAIDFGMAPGSLAMFRDEQVPAYLTAKKSLHQTSFSEVLALLQLTGQLSEIVLIGVQPECLDDYGGSLTPQVKAQLMPAVYLAQEVLAQ...... 153
7 -6.840IDP02329 enoyl-CoA hydratase [Bacillus anthracis str. `Ames Ancestor`] GBAA2551 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  19......ISLNRERQANSLSLALLEELQNILTANTRVVILCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIA-----AINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAVRLAKEAISNGIQVDLHTGL 228
8 -6.080IDP06038 gene: pth; peptidyl-tRNA hydrolase [Helicobacter pylori J99] NP_224108 [Helicobacter pylori J99]  ali follow..  14  3....................................LLVGLGNPDHTRHNAGFDILDSLVSELDLSFIFSPILLKPQTYMNLSESVLSAKNFYKTKELLIVDDL---DLPLGVVKFKKGGGNGGHNGLKSIDALCSNSYYRLRVGISKGINITFHNNEEPLKNAAFEHAKNALKFFIE.................. 165
9 -6.020IDP04689 enoyl-CoA hydratase [Bacillus anthracis str. `Ames Ancestor`] GBAA4761 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  11  9VEDHIAVATLNHAPANAMSSQVMHDVTELIDQVEKVVIHGEGRFFSAGADIKEFQATELAQLGQVTFERVEKCSKPVIA-----AIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPATARAVLELLQTTKSSHYYEGV 224
10 -5.920IDP04309 peptidyl-tRNA hydrolase [Bacillus anthracis str. Sterne] BAS0050 [Bacillus anthracis str. Sterne]  ali follow..  13  3....................................LIVGLGNPELTRHNIGFMAIDELAKRWNISLN---ILLKPLTYMNLSESIRPLMDYYKEDFVVLYDDL---DIPVGKLRLRMKGSAGGNGVKSTISHLGTQEFQ---IRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIM 181

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.