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Query: IDP04215 gene: smvA; methyl viologen resistance [Salmonella typhimurium LT2] STM1574_1_495 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSHTASWLIATRVLLAIGAAMIVPATLAGIRATFCEEKHRNMALGVWAAVGSGGAAFGPLIGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHAVMLIIAILLLVYSAKTALKGHLSLWVISFTLLTGALLLGLFIRTQLATSRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPYEAGVFMLPVMVASGFSGPIAGVLVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPAEKAAAAGAIETMAYELGAGLGIAIFGLLLSRSFSASIRLPAGLEAQEIARASSSMGEAVQLANSLPPTQGQAILDAARHAFIWSHSVALSSAGSMLLLLAVGMWFSLAKAQRRLast
1 -123.000IDP04215 gene: smvA; methyl viologen resistance [Salmonella typhimurium LT2] STM1574_1_495 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSHTASWLIATRVLLAIGAAMIVPATLAGIRATFCEEKHRNMALGVWAAVGSGGAAFGPLIGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHAVMLIIAILLLVYSAKTALKGHLSLWVISFTLLTGALLLGLFIRTQLATSRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPYEAGVFMLPVMVASGFSGPIAGVLVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPAEKAAAAGAIETMAYELGAGLGIAIFGLLLSRSFSASIRLPAGLEAQEIARASSSMGEAVQLANSLPPTQGQAILDAARHAFIWSHSVALSSAGSMLLLLAVGMWFSLAKAQRR 495
2 -47.700IDP95453 set236a-055 [Undefined organism]  ali follow..  17  13.RQALLFPLCLVLYEFSTYIGNDMIQPGMLAVVEQYQAGIDWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLAILLAQNIEQFTLLRFLQGISLCFIGAVGYAAIQESF-EEAVCIKITALMANVALIAPLLGPLVGAAWIHVLPWEGMFVLFAALAAISFFGLQRAMPETATRIGEKLSLKELGRDYK--------------------------------------------------LVLKNGRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLARLTSRRTVRSLIIMGGWPIMIGLLVAAAATVSHAYLWMTAGLSIYAFGIGLANAGLVRLTLFASD-MSKGTVSAAMGMLQMLIFTVGIEISKHA..................................................................................... 371
3 -39.400IDP04335 putative transport protein [Salmonella typhimurium LT2] STM1543_1_428 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  5.TMGWLIVFLLFIVYMLNYMDRSALSITAPLIEKELGFNAAEMGMIFSAFFIGYALFNFIGGWASDKVGPKTVFLIAALLWSVFCGLTGLVTGLWTMLIVRVLFGMAEGPVSAAGNKIINNWIS-RKESATAIGIFSAGSPLGGAVSGPIVGLLALSLGWRPAFGIIFLFGLVWVLLWYFIVSDKPTMSKR--------LAPEERIDFENHEDVILSD------------------------DGRATPSL---YYMKQPMVWATTLAFFSYNYILFFFLTWFPSYLNHSLHLDIKEISIATVIPWVIGAIGMVLGGVCSDVISRRLILGVCLAGAAVCVAVSGTVS---TIGSAITLMSVSLFLLYLTGPIYWAVIQDVVHKDKVGSVGGAMHGLANISGIIGPLVTGFIVQFS................................................................................. 388
4 -22.000IDP95412 set236a-014 [Undefined organism]  ali follow..  15  21......DFLLLCGSFFICGA-TGLVGTHLIPMSHEHGIPEVTAANMLALIGIFDLFGTMASGWLSDRYNNRWLLFYGLRGLSLIFLPYAYGTGLFGLGLFVVFYGLDWVATVPPTVRLAADLF-GKRNVGTVYAWIFAAHQLGAATAAFGAGALRTWLGYQVSFMLAGGLALLAAGMV............................................................................................................................................................................................................................................................................................................................. 195
5 -6.560CPX_91687_91741 Complex of PLMN_HUMAN with Q6V4L4_STRPY [Undefined organism]  ali follow..  666.......IALLKLSS--AVITDKVIPACLPSPNYVVADRTE-TGW----------------GETQGTFGAGLLKEAQLPV--IENKVCNRYEFLNGRVQSTELQGDSGGPLV------------FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTW-----------IEGVMRNNXRKLKTGTASVAVALTVVGAGLASQTEVKADQPVDHHRYTEANNAVLQGRTVSARNKNGQLRSENEELKADLQKKQELKNLNDDVKKLNDEVALERLKNERHVHDEEVEERKALEDKLADKQEHLDGALRYINEKEAERKEKEAEQKKLKEEKQISDASRQGLRRDLDASRNLTAELDKAKEEKQISDASRQGLRRDLDASREAKKQVEKDLANLTAELDKVKEEKQISDASRQGLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQA............................. 1131
6 -6.140IDP05430 hypothetical protein lmo1265 [Listeria monocytogenes EGD-e] lmo1265 [Listeria monocytogenes EGD-e]  ali follow..  1MKNRITMIAGIVCLSILTACSSSESVKGTTSEEQTTSQSGAEMIKANNGVVSYHGKYLKLAENMDNLEKDAPIIIKATKKSEKTTVTKETKETMSDVQINSIEKDTTGKLSENMTIKVLEYSVENVLVEGEEYDL-------------TIDGYKNMEKGEEYTLFLE........................................................................................................................................................................................................................................................................................................................................ 162
7 -5.740IDP90775 gene: dipZ; thiol:disulfide interchange protein precursor [Yersinia pestis CO92] YPO0345 [Yersinia pestis CO92]  ali follow..  16  190.......LPFSPLWALLIGIGIAFTPCVLPMYGREKPHSQRRILILAVVYVQGMALTYTLLGLVVAAAGLQAALQHPYVLIGLSVLFVLLALSMFGLYSLQ----------LPSSLQTRLTQWSNSQRGGSLAGVFAMGALAGLICSPCTTAPLSAILLY-TLYLYALGMGIPLVVVTLKLIPRSGPWMQYVKEAFGFVILALPVFLL............................................................................................................................................................................................................................................................................................... 404
8 -5.640IDP06321 ABC transporter permease [Streptococcus pneumoniae TIGR4] NP_345398 [Streptococcus pneumoniae TIGR4]  ali follow..  15  1...................MFRLTNKLAVSNLIKNRK-----------LYYPFALAVLL-----------------AVTITYLFYSLTFNPKIAEIRGGTTIQATLGFGMFVVTLASAIIVLYANSKNRSKELGIYGML------------GLEKRHLI-SMTFKELVVFGILTVGAGI---------------GIGALFDKLIFAFLL----------------------------------------LMKLKVELVATFQMN---VVIAVLVVFGLIFLGLMFLNA----------LRIARMNALQLSREKASGEKRGRFLPLQTILGSISLGIGYYLALTVTDPLTALTTFFLAVLLVIFGTYLLFNAGITVFLQILKKNKK-SVSNLIFRMKKNAVGLAIAILSTMVLVTMSAATS........................................................................... 305
9 -5.640IDP05328 GW repeat-containing surface protein [Listeria monocytogenes EGD-e] lmo2591 [Listeria monocytogenes EGD-e]  ali follow..  15  1MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQAFIDEILPAAQTSVTLAQAILESNWGESGLSQNSKNLFGIKGTYKGKSVSMGTM-NFRVYPSWKESIEDHTALITENARYQDAVDETDYRKALQAIKDGGYATDPDYVSKLVAIIERYNL............................................................................................................................................................................................................................................................................................................................................ 179
10 -5.520CPX_91687_91739 Complex of PLMN_HUMAN with Q6V4K9_STRPY [Undefined organism]  ali follow..  666.......IALLKLSS--AVITDKVIPACLPSPNYVVADRTE-TGW----------------GETQGTFGAGLLKEAQLPV--IENKVCNRYEFLNGRVQSTELQGDSGGPLV------------FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTW-----------IEGVMRNNXRKLKTGTASVAVALTVVGAGLASQTEVKADQPVDHHRY----------TEANNAVLQGRTVSARALLHEINKNGQLRSENEELKADLQK-------------EQELKNLNDDVKKLNDEVALERLKNERHVHDEEVELERLKNERHDHDKKEAERKALEDKLADKQEHLD--------GALRYINEKEAERKEKEAEQKKLKEESDASRQGLRRDLASREAKNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAEKASDSQTPDAKPGNKAVPGK........................... 1093

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35