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Query: IDP04317 putative lipoprotein [Yersinia pestis CO92] YPO0512 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRSLFRVLPIFILTGCVLLSGCSWFSSSSEAALQKRRIDLQVVAAPLINPGPNGQAQPLKVCIIELNKEGWSPPGLYQGTLCSGISVGGEVVSVTEYILAPTEVRQYSRDVPFEQERWWAIAAEFQEMSNGKSLLTLKSDARADFNRVVLVDGKALSLKASTKLast
1 -79.400IDP04317 putative lipoprotein [Yersinia pestis CO92] YPO0512 [Yersinia pestis CO92]  ali  100  1MRSLFRVLPIFILTGCVLLSGCSWFSSSSEAALQKRRIDLQVVAAPLINPGPNGQAQPLKVCIIELNKEGWSPPGLYQGTLCSGISVGGEVVSVTEYILAPTEVRQYSRDVPFEQERWWAIAAEFQEMSNGKSLLTLKSDARADFNRVVLVDGKALSLKASTK 163
2 -54.700IDP90095 ZZZ_0011 [Escherichia coli 042]  ali follow..  11  1LMT-IKCLLLAVMVCPFFITACSDKYSEQDRVFGAGLLTFQISSDTQLNSL-NEISNSCALLFLQASDKNLQDIMNNPVLFFIGTGKVDGILKVDKYVAMPGQEITLHIDR-NEGTKYVGVVAGYYPFPGKQHMLLLDIPVDVVEEKKISMGKESISMK.... 184
3 -14.100IDP05670 hypothetical protein lmo0617 [Listeria monocytogenes EGD-e] lmo0617 [Listeria monocytogenes EGD-e]  ali follow..  12  1MKKLKSILLLMGITFALALTACGGTEDKASTEKIETAYKVEILSSEVVKDFEGNNAIAIKTKFTNNSKENISFMVAIDQQQLETTVSADASMGGSEKDVQPGGTLEELYKLQDTQNTVDIEATELISFSKNSVKKSFELK....................... 164
4 -13.900IDP05554 hypothetical protein CD3669 [Clostridium difficile 630] CD3669 [Peptoclostridium difficile 630]  ali follow..  13  1MKNKKIMLVLSILSISIFAVGCTNAQNGSDSSKKETKSNTNVEQPKEAKPTPKEETKAQSATIYSFDVDK-LIENKVDLNKIDENTLFEELQKLKVVPESAKLNSFTTKDIDGVKTGILDVSSDFTKSNLGSDAETLMLDSMNVEQIKITVDGSNYE...... 178
5 -12.700IDP02402 hypothetical protein FTT1778c [Francisella tularensis subsp. tularensis SCHU S4] FTT1778c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  10  1MKLRKVLIATLLGASALSLSSCWLLVGAAVGGGTAAYISGEYSMNMSGSVK----------DIYNATLKAVQSNDDFVITKKSITSVDAVVDGSIKV----STSFYVKIEKLTDNASKVTIKFGTFGDQAMSATLMDQIQKN..................... 129
6 -12.400IDP05125 putative lipoprotein [Bacillus anthracis str. Ames] BA_4310 [Bacillus anthracis str. Ames]  ali follow..  8  1MKKL----IMTLFIAMLALAGCNTNKEEPKKEQKLEAVKVAVQTNPK----KPGEKTEVQALV----------------TQGKEKVTDADDVKFEVWKAGDEKHEMLEGKHKGKGV----------------YAVEKTFETDGVYHIIAHTNAREMHVMPEVK 125
7 -11.900IDP05763 hypothetical protein lmo2331 [Listeria monocytogenes EGD-e] lmo2331 [Listeria monocytogenes EGD-e]  ali follow..  10  1MKKGIALLAGFMLAFSIFLTGCGGTDNTRKENHSDGSAEVKNKKDNNTSDEYVEDGLLLKVGEWTKDKDYDTKVTLEKIATPKIKVGLGDL----NMLI---KDVKIFKRENVSDAEKEEFSGGKVPVTDPYYTIQVKYDLENTGKNVLNFNGIDYIITDQKQ 156
8 -11.900IDP05442 putative lipoprotein [Bacillus anthracis str. Ames] BA_0171 [Bacillus anthracis str. Ames]  ali follow..  8  1MSKKLLSLFSAVIVAAFVITGCGQSDTTNKEQKENAAKENKTEKTDTTKENKPEEKNP......................................................................................................... 58
9 -11.400IDP06159 hypothetical protein jhp0866 [Helicobacter pylori J99] NP_223584 [Helicobacter pylori J99]  ali follow..  10  2NKKHRLAFLGLIVGVLFFFSACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIELQKLGFYNVFTQA..................................................................................... 81
10 -11.400IDP91374 outermembrane lipoprotein [Vibrio vulnificus CMCP6] VV1_1919 [Vibrio vulnificus CMCP6]  ali follow..  9  1MKNI-----GLLLLASLFLAGCTTPTHLPLSGSQAIEITVTGNEGHWYSYLFFSNDTMMQGAVNDLKNNA--------------KELDADTI....................................................................... 88
11 -11.200IDP06193 gene: lpp20; lipoprotein [Helicobacter pylori J99] NP_224067 [Helicobacter pylori J99]  ali follow..  10  1MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPD-VGDLEKVAKYE----FLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRSISKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVELGMVKK 175
12 -10.900IDP04197 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2510 [Clostridium perfringens ATCC 13124]  ali follow..  21  1MKK-LLVPVLVIIIFALLFVGCTNSSNSSSDSSVEIINSNQQNSNSNNNNSSNNDTKK......................................................................................................... 57
13 -10.900IDP05580 putative lipoprotein [Bacillus anthracis str. Ames] BA_0936 [Bacillus anthracis str. Ames]  ali follow..  5  1MLK-KLGILVLGSAVALSLVACGDSTKEASNEKKEEPKQEAKKENKENKESKK.............................................................................................................. 52
14 -10.700IDP05607 putative lipoprotein [Bacillus anthracis str. Ames] BA_4862 [Bacillus anthracis str. Ames]  ali follow..  6  1MDRMKFSMFMFLGVVLIILAACTTKSVEQVAVKEVPKEGYIILRNETVFLADDKTFETKIELQNYIEQQMNQDYPSDIVLIFKDKDAYDQLKTGDKIKVYPVKMIVEKFEIAEK................................................. 123
15 -10.700IDP05503 putative lipoprotein [Bacillus anthracis str. Ames] BA_4863 [Bacillus anthracis str. Ames]  ali follow..  10  1MKRA-----LFFFISIFFLGSCSIWYVTFSSESKSWTGQYKGHIKDDFTFRYKGGDGNTEFKNLEIAINGAFSTMTQTSENHKGAKIEMKSSCVSCAPLSKDEPIEIVIKWDDKYEEKMVL.......................................... 121
16 -10.500IDP04392 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1500 [Clostridium perfringens ATCC 13124]  ali follow..  14  1MRVL--KGVILAIIPAFLFMGCGEFSKNDVAKVSFEKLSLNLTDNRKVKNISKNKGYRIDLNYEVYKEGKEVKNE........................................................................................ 83
17 -10.400IDP93848 lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005557 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  12  1M--MKKIFLATTLITTVLLSGCATESSRSLEVAKVTSYGTQYNGPR------------SPISVGKFDNRSIFSDGVDRLGNQSKTILVTHLQQTGRFNVLERTNMEELKNEAA-GATYVGDVTEFGRKETGDRQLFGILGRGKSQVAYAKVNLNIVNVNTSE. 163
18 -10.300IDP05448 hypothetical protein lmo2594 [Listeria monocytogenes EGD-e] lmo2594 [Listeria monocytogenes EGD-e]  ali follow..  10  1...MKKTSIIFIFCTLLFVTACSTSENQTQATEATGTIAILINNFKEKKDKYNPEAAIRFDIVDKYYDETGNKIKITDLNKNDDVKIKDFPIQET----SPAQIDPKYVQKIILLNK.............................................. 119
19 -10.100IDP05588 putative lipoprotein [Bacillus anthracis str. Ames] BA_2883 [Bacillus anthracis str. Ames]  ali follow..  10  1MKVYVKIALLLTFTCIFALAACKGTDEKKETNPTSENSKNEQNTSSEGKKEPEVKSNT......................................................................................................... 59
20 -10.100IDP02672 hypothetical protein FTT1602 [Francisella tularensis subsp. tularensis SCHU S4] FTT1602 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  10  1MK--KQLFAISITTALLVLSACGQTGPLYLPDEDKLNSGSTLAKSGSSIMVKQNQQNNSTSTSDNQSDTSTKVDNDPTAPVRNNNPTTSELFEGEN................................................................... 94
21 -10.100IDP05183 putative lipoprotein [Bacillus anthracis str. Ames] BA_5237 [Bacillus anthracis str. Ames]  ali follow..  9  1MK--RLSYFLVFILICLVSAGCAKDKEGEKLEYNGRALVIGV-----VGEKPKDTFRNVKFEEMKLEELEKKSKEVDGFLAHFQEASTDQYKNVFSSLKKPTKGIEYNSARKDVNAMYTQGFANIGSGEGQQWGIGLSNGGNVEESIHNMYIVVFQTIADYLN 174
22 -10.000IDP05625 putative lipoprotein [Clostridium difficile 630] CD1348 [Peptoclostridium difficile 630]  ali follow..  10  1MNKI--AVSFLIIATTLLSTACMDYSISAVELVDSKESAVVKKDEDAKEETTSKMINSKKTTKIPIEIISKDEKIVKYLQIDEESSLKDKL........................................................................ 89
23 -9.910IDP05515 putative lipoprotein [Clostridium difficile 630] CD1687 [Peptoclostridium difficile 630]  ali follow..  10  4IVKKSISLMIILTIFIFMLTACEKDEQPDSVDIQTEDKNLNIGKSEIINIDEGDKVDTST----KVENNSTFNISNVELYDENKKIISSDSKALLDMTLMPGKVAYIECG..................................................... 124
24 -9.690IDP05658 hypothetical protein lmo0207 [Listeria monocytogenes EGD-e] lmo0207 [Listeria monocytogenes EGD-e]  ali follow..  9  1MKMLKKGTVLFVMIMAVMLVACGDKEETKTYTLSQNGVDSKLTYTYK-KVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYK-----------------DDKAIETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQ.. 146
25 -9.640IDP05508 putative lipoprotein [Bacillus anthracis str. Ames] BA_5398 [Bacillus anthracis str. Ames]  ali follow..  7  1MTIRKRT--SFIWIFLFSLVACSPPNTTIDKKNDVVVKGTGISNLDKFEQ-EQVKVDKIRIVHYTFQTLERSKNDILYASDNRKDQFDGDNKGLYKDSCK-------SIVKDERESGTTYRLIDCTNEGGPNGYDVLYVPKK..................... 143
26 -9.620IDP05451 putative lipoprotein [Bacillus anthracis str. Ames] BA_0580 [Bacillus anthracis str. Ames]  ali follow..  9  1MKKI-----GTMLLFSILIAGCTQAQPDLKKPKKEAIATSSTQVNAPSKIPLKGIEEKIAM-MWYFLDPEMPTGKLSIIALKQGSVTPTPLLFQQESSEPTWTTSNTIDSTTNELPLTMSL------PSSGLWVLNIYVNEKYYDQFVITAE........... 174
27 -9.570IDP05010 putative lipoprotein [Bacillus anthracis str. Ames] BA_4934 [Bacillus anthracis str. Ames]  ali follow..  14  1MKKV-LMLFVLLLTASILLIGCSTKKEKAGMNLEKAQKVEIESLTDSSEKKVITDKKEIEKLFEVMKMDKWEMQSAFKMYQEDTTKLSESVYKDVPYVEVEMKNKKMSFKVPEDVAKDL............................................ 141
28 -9.540IDP91154 hypothetical protein SAOUHSC_00808 [Staphylococcus aureus subsp. aureus NCTC 8325] SAOUHSC_00808 [Staphylococcus aureus subsp. aureus NCTC 8325]  ali follow..  7  1MKKV----MGILLASTLILGACGHHQDSAKKESTSHKFEAKIKEPFIINEKDEKK--KYIAFKMEITAKKDDKHDYINITQDDKNT--KDWTEHNQDQIKKGKTAQAMFIYELRGDGNINLNVHKYSEDKTVDSKSFKFSKLKTEDFSHRAETREEVEKKEKE 213
29 -9.500IDP05267 hypothetical protein lmo0255 [Listeria monocytogenes EGD-e] lmo0255 [Listeria monocytogenes EGD-e]  ali follow..  13  1MKKF--LSILSILVLALLVTACGSDSSDKKSAKKEEK-----METVTYIADINGAKLEATFNLRKVDQKPLTALGLESGANLDDATKKQLEEQVASQYSAYKESKGASLETKFTDEALELTMS---DLYKADKDSVASLLGGTTDPKNVSLKETVKQFEAQ.. 160
30 -9.480IDP01305 lipoprotein-related protein VC1064 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  1MKKV--LLIVISILFGSVLVGCQMNESNKTQD-KIQSITGSVAYRERIAL-----PDNAVVTV-YLQDVSLADAPATVIAKQNFITNGMQVLAYDSRKIKASHRYSVSARIEVDG................................................ 111
31 -9.320IDP05319 putative oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus anthracis str. Ames] BA_2848 [Bacillus anthracis str. Ames]  ali follow..  13  1MKKFVRYSLFSTLFVSSILVGCAKEKTTTKPKDEKKVLQLLETGEIPFRLSKNDEVIEAGAQKYEVSKDGKTYT--DAKWSNGDPVTAQDYVYAWKQLINP--------DTASQYAYIAYDVKNAEKINKKQLGLELGVKAKDDKTFVVELEH.......... 171
32 -9.230IDP06088 hypothetical protein jhp0340 [Helicobacter pylori J99] NP_223059 [Helicobacter pylori J99]  ali follow..  10  1MKNL-----STLLVFLFFCLGCVSNFNEDTYTLDLLEKKIQASRKGEITQDNVPIITAIATHLNDVDSGTYYDHEYFNNDWIDDGYISYELFGTKPTGSEPLWVREITRDEFDGSRAFLIAFDKLDYLAVQEAKLELDAYSLGKIVFNFAYQVPLPQF..... 169
33 -9.210IDP05121 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_0915 [Bacillus anthracis str. Ames]  ali follow..  9  1MLK-KFTTCILGGALVFNLSGCGNTSDKTSSESKETNSKQEEKNVQTTDEAKTKENT---------KQKNTEQTKEKSKIKEKEYAVNKDFTPKFDVTVKRVVERD-GFQKPEDGHVFIVVEAEGKNITSEP............................... 129
34 -9.200IDP05563 hypothetical protein lmo2417 [Listeria monocytogenes EGD-e] lmo2417 [Listeria monocytogenes EGD-e]  ali follow..  14  1MKKV--LGLIFTLSLVLVLTACGGSSDKASSSKDDKQLVVGASNTPHAKPILKDKGIDLKIVKYDLDANYFQHKPYLELEEKEK---GYKFADVGAIHIEP----------------YSKKVKDIKDLKDGAQVLLSNSKSDWPRVIGIFVDNGLLTLKDGVK 164
35 -9.190IDP04088 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2931 [Clostridium perfringens ATCC 13124]  ali follow..  9  1MKKG----MILLILSSFLLVGCDSIKMDKLAA----------NNNERVKTIANDLIGDIDLSLYFDGTKDEQNPKIEQQEILVDGDEILGQYLIQALIQGPSQKGSLAPILIKDDIAIINLSKEAIVNMSATKEQATLEGIIATITQIPSINKINILVDNQM. 158
36 -9.100IDP05592 putative lipoprotein [Bacillus anthracis str. Ames] BA_3194 [Bacillus anthracis str. Ames]  ali follow..  11  1MKIL--KFGIIGALSITLLIGCTSNSNETKASNKEASTAVKEKEIVYEN--------------VMFEQKEVRKLEISPVNSKSSNQVNTENIKTIFTSMESAEKKTLLLDQEAKNYIHSKMKVTYQDNSIQEFFVWIE-SDSDIVIAKASDETHGEGYDLRED 147
37 -9.080IDP05695 hypothetical protein lmo2080 [Listeria monocytogenes EGD-e] lmo2080 [Listeria monocytogenes EGD-e]  ali follow..  13  1MMTGFKKVILPVLLVVLFLAGCNQAEVITDTSLLENNNELTVNGTLTWNGEKNDYASEVMITV---SNTAVTNATTGKAMKLADIKEEDTVRAVFPQGSNPAPGKVSENATSLKVT............................................... 125
38 -9.040IDP05711 oligopeptide ABC transporter, solute binding protein [Bacillus anthracis str. Sterne] BAS1732 [Bacillus anthracis str. Sterne]  ali follow..  14  1MKRKKSHLMVMALVISLLLTACNNKENKSDAKSKKQVLNVTVSEEIPYVLDDQDQPIPAVAKSFKRSEDGKKYT--YAKWSNGDKVTAHDFMFAWKRAIAP--------ETASQYASMLFYVKNAKEINKGTMPLELGVTVINDYKLEVELEQ.......... 172
39 -9.020IDP05078 hypothetical protein lmo1340 [Listeria monocytogenes EGD-e] lmo1340 [Listeria monocytogenes EGD-e]  ali follow..  10  1MKKSNTFLLITILVLVFISFGCSEEKETPKKTAKEVQ-GVQIKTKEFQRVVGWLSKDSV---LLQTKKSGVTYFEELNIYNEKKRPIFNTKESISEVQISPDYRNILLYSAESAEKATMRII----ALNDGSTVASRATKPLTTTFYWNDESPEKIMFVTYSP 156
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.