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Query: IDP04380 gene: rfaL; O-antigen ligase [Salmonella typhimurium LT2] STM3713_1_404 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLTTSLTLNKEKWKPIWNKALVFLFVATYFLDGITRYKHLIIILMVITAIYQVSRSPKSFPPLFKNSVFYSVAVLSLILVYSILISPDMKESFKEFENTVLEGFLLYTLLIPVLLKDETKETVAKIVLFSFLTSLGLRCLAESILYIEDYNKGIMPFISYAHRHMSDSMVFLFPALLNIWLFRKNAIKLVFLVLSAIYLFFILGTLSRGAWLAVLIVGVLWAILNRQWKLIGVGAILLAIIGALVITQHNNKPDPEHLLYKLQQTDSSYRYTNGTQGTAWILIQENPIKGYGYGNDVYDGVYNKRVVDYPTWTFKESIGPHNTILYIWFSAGILGLASLVYLYGAIIRETASSTLRKVEISPYNAHLLLFLSFVGFYIVRGNFEQVDIAQIGIITGFLLALRNRLast
1 -95.600IDP04380 gene: rfaL; O-antigen ligase [Salmonella typhimurium LT2] STM3713_1_404 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali  100  1MLTTSLTLNKEKWKPIWNKALVFLFVATYFLDGITRYKHLIIILMVITAIYQVSRSPKSFPPLFKNSVFYSVAVLSLILVYSILISPDMKESFKEFENTVLEGFLLYTLLIPVLLKDETKETVAKIVLFSFLTSLGLRCLAESILYIEDYNKGIMPFISYAHRHMSDSMVFLFPALLNIWLFRKNAIKLVFLVLSAIYLFFILGTLSRGAWLAVLIVGVLWAILNRQWKLIGVGAILLAIIGALVITQHNNKPDPEHLLYKLQQTDSSYRYTNGTQGTAWILIQENPIKGYGYGNDVYDGVYNKRVVDYPTWTFKESIGPHNTILYIWFSAGILGLASLVYLYGAIIRETASSTLRKVEISPYNAHLLLFLSFVGFYIVRGNFEQVDIAQIGIITGFLLALRNR 404
2 -63.000IDP00229 putative O-antigen biosynthesis protein YPO0417 [Yersinia pestis CO92]  ali follow..  14  1MTTLSPAIP--VNRRSEMLCSIAALLLGISMPTNNQLMSVSLVLIIISLI--INRKSLDFKPLLTSPLVYLPAAMFVLLALSLLYQNNSYGP--DMVGKYKKLLYILPLALFFMNQPRLIKLFCTGFLVANAVILAGSLAVGVLHIPLSGVDPTNPTIFKLQITQNFFMALAALLWLVLAFQHQGKRWGYSVLVVAASYSILFLVLGRTGYVALIVGLGVWLFFSLGNRQRLTLVVLGALAFAALIFIPNKVCMAASATDAADACNSSMGQRSAFVVEAARLIKESPILGHGAGGFYYENKEVDY----------KVNNPHNQYLLETIQSGVIGLFLFLAWVICCYRVIWQQTPALR--------NVLLAVLTSYMACNFFNSFLLDSSEGHLFMIFVAVLA. 393
3 -60.200IDP95152 mucoviscosity-associated protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920361 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  10  1MISGALYIIAVLSLSWLRPMVGLALASNAYL-SDSPVFNVLGPLICFVTIFSKVILKDKVSLVRFKFADGIIFGFFLLYILSAFFSNDLVIGLEFSLRYLFLGASFYFFARFSYVLYLDKGKFINDYMHGILITGFIVAVTALMQNNSSQYTMRLTVGDSSTIPLAITLGQAAVVNVYYIMTQKGKKSIPYLISFLPIVYAFLAANTRSVVIGFILALLLLLSSDKFSIVRKNFGKVLLAISGMAVFELVARLFSTFGHIATEQYGQSESERIDAWHHAIATFYEHPILGEGVGIFIQRFNM----------------YPHNIFFESAAETGIVGILLTVVLIGSCFYSIITNKGDVKTP-------VVAAMFIFLFFVSLVSLSFWMHKALFTSIALIFITYG 399
4 -58.000IDP91390 Lipid A core - O-antigen ligase [Vibrio vulnificus CMCP6] VV1_1426 [Vibrio vulnificus CMCP6]  ali follow..  13  1.MATIHVSQVPLNKKFLLALAILFLVAMHFFAGLALSFNPTTWIAFSFVFALGCYQLASQQYLRYSKLTIGLFVSCLILTVPLFYANSHYMQSVSRLVGLWAGFGFFVLLQQFSFSNKYKQRLLWLVVLAVVIESFIGYYQFLW-MGYDTLSNRPYGIFQQPNVMASFLATGLIISGYLLARKHLSEITLLYLIPLLTVPLIVVLASRTGWLAAMIATLLLLPYLYRFGTKIRFWGWLGSIILGLSLSGA---LQSTESNLAGQKTNLESARAYTFPQALDMLIEKPFTGYGYGNFESAYTLYTLLNKQYPPALPAMDHPHNELLYWGVEGGLVPLLGIFLAAILVLNRIYSAKKGTR--------LAMFALFVPIVLHSQLEYPFYHSAAHWLIFIILIYWV. 422
5 -7.320IDP05450 hypothetical protein lmo2776 [Listeria monocytogenes EGD-e] lmo2776 [Listeria monocytogenes EGD-e]  ali follow..  13  1.................................................................................................................................................................................................................................MKKKVCVLAIALLTVLSPMGALAAQNLNEGETSLDSLMSANKTGEKVIFSETTTGKKPLLKAAQSAGGGTFWVTWGQDRHYSNY-----QHTKKTHRSSASNWKAKNNLATA................................................................... 115
6 -6.600IDP04349 putative inner membrane protein [Salmonella typhimurium LT2] STM0557_1_550 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  1.MRRKMVNNRLKMVIAILIVFSLVYSIGFITPMNSDDYTYALRELSLSSVKMHYLGWSGR---------------VVSDTISTSLLKFFSPHIYNAINSAALTLMVLCWTMIPATLTKSSPSPYVMIFLFFLYFVANPALGQTNFWLVGS-------------NYLWTNMFIAIYILISIYLSNGKKSNLILFVYAISSIFAGCSNENTSLVVVLISVAYFFIMNRNKYLLIGVFGSAIGAGVLLLA---------------------------------------P------GNLSRASTIQDWYN--QPLAWRVLEHFSERLPSAMGAYWQVYIAFIILLISVVLS------RNSSSKLMFGSFLFMLGAIAANVAFLASPAMPSRALNGALCFMILSISF. 322
7 -6.580IDP05094 hypothetical protein BA_3160 [Bacillus anthracis str. Ames] BA_3160 [Bacillus anthracis str. Ames]  ali follow..  15  1...............................................................................................................................................................................................................................MLSKKAKTMVIAIPLATVIGLGGYSAFNSHFSPVAEEDKNTETVILSKDFPATSDLNQMINEADLVVIGEYEGLDSKWNMARNPSNPSEEDKENYVEGHLY-NFNISETIKG..................................................................... 111
8 -5.920IDP92689 hypothetical protein SAVC_09040 [Staphylococcus aureus subsp. aureus VC40] YP_005291395 [Staphylococcus aureus subsp. aureus VC40]  ali follow..  284......................................................................................................................................................................................................................................................YNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNKSERYYRDEQVLAIGSPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMM-VVFSIMLFLFVKRNKKKNKNESQRR........................................ 419
9 -5.230IDP01810 gene: ygiB; hypothetical protein STM3187 [Salmonella typhimurium LT2] STM3187 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  1.............................................................................................................................................................................................................MKRTKSIHHAS-------FRKSWSARHLTPVALAVTAVFMLAGCEKSDETVSLYQNADDCSAANPGKSAECTTAYNNALKEPKYAFGEGQ----QQAPAQAGMAPENQAQAQQSSGSFWMPLMA--GYM...................................................................... 130
10 -5.120IDP01747 gene: ypeC; putative periplasmic protein [Salmonella typhimurium LT2] STM2407 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  1...................................................................................................................................................................................................................................MFRSLILAAALLAFTPLAANAGEITLLPSIKLQIGDRDDYGNYWDGGRWRDRDYWHNHYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRD.................................................................................. 95

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.