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Query: IDP04414 gene: sepA; SepA, extracellular serine protease of the IgA1 protease family, secreted by a C-terminal autotransporter domain [Shigella flexneri] CAC05786 [Shigella flexneri], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNKIYYLKYCHITKSLIAVSELARRVTCKSHRRLSRRVILTSVAALSLSSAWPALSATVSAEIPYQIFRDFAENKGQFTPGTTNISIYDKQGNLVGKLDKAPMADFSSATITTGSLPPGDHTLYSPQYVVTAKHVSGSDTMSFGYAKNTYTAVGTNNNSGLDIKTRRLSKLVTEVAPAEVSDIGAVSGAYQAGGRFTEFYRLGGGMQYVKDKNGNRTQVYTNGGFLVGGTVSALNSYNNGQMITAQTGDIFNPANGPLANYLNMGDSGSPLFAYDSLQKKWVLIGVLSSGTNYGNNWVVTTQDFLGQQPQNDFDKTIAYTSGEGVLQWKYDAANGTGTLTQGNTTWDMHGKKGNDLNAGKNLLFTGNNGEVVLQNSVNQGAGYLQFAGDYRVSALNGQTWMGGGIITDKGTHVLWQVNGVAGDNLHKTGEGTLTVNGTGVNAGGLKVGDGTVILNQQADADGKVQAFSSVGIASGRPTVVLSDSQQVNPDNISWGYRGGRLELNGNNLTFTRLQAADYGAIITNNSEKKSTVTLDLQTLKASDINVPVNTVSIFGGRGAPGDLYYDSSTKQYFILKASSYSPFFSDLNNSSVWQNVGKDHNKAIDTVKQQKIEASSQPYMYHGQLNGNMDVNIPQLSGKDVLALDGSVNLPEGSITKKSGTLIFQGHPVIHAGTTTSSSQSDWETRQFTLEKLKLDAATFHLSRNGKMQGDINATNGSTVILGSSRVFTDRSDGTGNAVSSVEGSATATTVGDQSDYSGNVTLENKSSLQIMERFTGGIEAYDSTVSVTSQNAVFDRVGSFVNSSLTLGKGAKLTAQSGIFSTGAVDVKENASLTLTGMPSAQKQGYYSPVISTTEGINLEDNASFSVKNMGYLSSDIHAGTTAATINLGDSDADAGKTDSPLFSSLMKGYNAVLRGSITGAQSTVNMINALWYSDGKSEAGALKAKGSRIELGDGKHFATLQVKELSADNTTFLMHTNNSRADQLNVTDKLSGSNNSVLVDFLNKPASEMSVTLITAPKGSDEKTFTAGTQQIGFSNVTPVISTEKTDDATKWVLTGYQTTADAGASKAAKDFMASGYKSFLTEVNNLNKRMGDLRDTQGDAGVWARIMNGTGSADGDYSDNYTHVQIGVDRKHELDGVDLFTGALLTYTDSNASSHAFSGKNKSVGGGLYASALFNSGAYFDLIGKYLHHDNQHTANFASLGTKDYSSHSWYAGAEVGYRYHLTKESWVEPQIELVYGSVSGKAFSWEDRGMALSMKDKDYNPLIGRTGVDVGRAFSGDDWKITARAGLGYQFDLLANGETVLQDASGEKRFEGEKDSRMLMTVGMNAEIKDNMRLGLELEKSAFGKYNVDNAINANFRYVFLast
1 -298.000IDP04414 gene: sepA; SepA, extracellular serine protease of the IgA1 protease family, secreted by a C-terminal autotransporter domain [Shigella flexneri] CAC05786 [Shigella flexneri]  ali  100  1MNKIYYLKYCHITKSLIAVSELARRVTCKSHRRLSRRVILTSVAALSLSSAWPALSATVSAEIPYQIFRDFAENKGQFTPGTTNISIYDKQGNLVGKLDKAPMADFSSATITTGSLPPGDHTLYSPQYVVTAKHVSGSDTMSFGYAKNTYTAVGTNNNSGLDIKTRRLSKLVTEVAPAEVSDIGAVSGAYQAGGRFTEFYRLGGGMQYVKDKNGNRTQVYTNGGFLVGGTVSALNSYNNGQMITAQTGDIFNPANGPLANYLNMGDSGSPLFAYDSLQKKWVLIGVLSSGTNYGNNWVVTTQDFLGQQPQNDFDKTIAYTSGEGVLQWKYDAANGTGTLTQGNTTWDMHGKKGNDLNAGKNLLFTGNNGEVVLQNSVNQGAGYLQFAGDYRVSALNGQTWMGGGIITDKGTHVLWQVNGVAGDNLHKTGEGTLTVNGTGVNAGGLKVGDGTVILNQQADADGKVQAFSSVGIASGRPTVVLSDSQQVNPDNISWGYRGGRLELNGNNLTFTRLQAADYGAIITNNSEKKSTVTLDLQTLKASDINVPVNTVSIFGGRGAPGDLYYDSSTKQYFILKASSYSPFFSDLNNSSVWQNVGKDHNKAIDTVKQQKIEASSQPYMYHGQLNGNMDVNIPQLSGKDVLALDGSVNLPEGSITKKSGTLIFQGHPVIHAGTTTSSSQSDWETRQFTLEKLKLDAATFHLSRNGKMQGDINATNGSTVILGSSRVFTDRSDGTGNAVSSVEGSATATTVGDQSDYSGNVTLENKSSLQIMERFTGGIEAYDSTVSVTSQNAVFDRVGSFVNSSLTLGKGAKLTAQSGIFSTGAVDVKENASLTLTGMPSAQKQGYYSPVISTTEGINLEDNASFSVKNMGYLSSDIHAGTTAATINLGDSDADAGKTDSPLFSSLMKGYNAVLRGSITGAQSTVNMINALWYSDGKSEAGALKAKGSRIELGDGKHFATLQVKELSADNTTFLMHTNNSRADQLNVTDKLSGSNNSVLVDFLNKPASEMSVTLITAPKGSDEKTFTAGTQQIGFSNVTPVISTEKTDDATKWVLTGYQTTADAGASKAAKDFMASGYKSFLTEVNNLNKRMGDLRDTQGDAGVWARIMNGTGSADGDYSDNYTHVQIGVDRKHELDGVDLFTGALLTYTDSNASSHAFSGKNKSVGGGLYASALFNSGAYFDLIGKYLHHDNQHTANFASLGTKDYSSHSWYAGAEVGYRYHLTKESWVEPQIELVYGSVSGKAFSWEDRGMALSMKDKDYNPLIGRTGVDVGRAFSGDDWKITARAGLGYQFDLLANGETVLQDASGEKRFEGEKDSRMLMTVGMNAEIKDNMRLGLELEKSAFGKYNVDNAINANFRYVF 1364
2 -56.100IDP00097 gene: S1242; hypothetical protein S1242 NTL02SF1117 [Shigella flexneri 2a str. 2457T]  ali follow..  13  1...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MQGKNTIVTTGDYSIGLLSQTSGNLNTDTIIRVNSDGSVTPSFSDGDDTFIVTAGNHAVGVLACASPGSACACVSSLDEESTADTGSNENNAIAKLDMAKGEITTHGTESYAAYANGTVVKAGDTLDYTNA-SVTLTDVDITTHGDNAHAIAARQGTVSFNQGEIYTTGPDAAIAKIYNGGTVTLKNTSAVAHQGSGIVLESSINGQEATVDILSGSSLRSANEILYHKDETSNVTITDSEVSSAADVFINNIKGHLTVDATNSKITGSANISTDDNTHTYLSLSDNSTWDIKADSTVSNLTVDNSTVYISRDVEPTRLTITNYVGNNGVLHLRTDNSATDKVVINGNTSGTTRVKVTNAGGSGATLNGIEIISVEGESNGEFIKDSRIFAGAYEYSL-TRGNTEATNKNWYLTNFQATSGGETRPEAGSYVANLAAANTLFVMRLNDRAGEVTEQERSSRLWLRQIGGHNAWRDSTTSHRYVSQLGGD---FTDSDSWRLGVMAGYARDYNLTHSSKGSVRGYSAGLYATWFADKGAYIDSWAQYSWFKNS--VKGDELAYESYSAKGATVSLEAGYGFALNKTWIFQPQAQAIWMGVDHNAHT---EANGSRIENDANNNIQTRLGFRTFIRTQEKNSGFEPFVEMNWIHNS-KDFAVSMNGV---KVEQDGVSNLGEIKLGVNGNLNPAASVWGNVGVQLGDNGYNDTAVMVGLKYKF 773
3 -49.900IDP93877 putative pertactin family virulence factor/autotransporter [Yersinia enterocolitica subsp. enterocolitica WA-314] EKA26326 [Yersinia enterocolitica subsp. enterocolitica WA-314]  ali follow..  10  2........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ENTNNPRRNILKPSTSKPTHSVLKKTVFKKSPIAKLVLFALFICGSSSAISDAKKIAPTHSGVVDKDVTLKLKQVAKDSIINGTGKLKLTGNSRAYSTQVNTGDMLPFQLEDQSIAIGNKISHGSIEVTDDAKALGTEIGLVNAKHEVRIINNITKKFEELVTMLIPPQGHVFDKKLGRMDISQQGKSNQTTIGMHGSLYLGGTGIAENTHIQEGGELVVQNLLDTPTLKDTTVSGVLTIMHGSDVLLQGKTEFLPTAKWNIKNNDIINEGQLIFRNGGVFYARIDGTGSLIKEDANTLTLQGNGDSNIPDYVYSGETYINNGDLLLSSAILIGSPVIGKKNTNGSQLITTVQGGNVFIGNNSLWEMRGNSSINDLTISDTVLNFNDKKVGDKLIISNYVGQGGTLIFYSDDSETDRMLVEGNTYGHTKVIINNLGGEAQTDVGILLIEVKGESKGEFEQDGRNVAGAYEYFLRRGSEDDRKKNWYMISDAAIFDKKSMRPENGSYIANLSMARNLFTSDLDNRSGNVTGEWRTSSMWIQTQGGIKQFGKTIKGKYYSIQLGGD---IGTQGNGRIGMLAGMGKATNHSKSSNGSVNGYNLGVYATWLTDTGLYIDTLAQYSWFNNA--VNGQKLAEEKYKSSGFTSSIESGYTFNIGSTYFIQPNAKITWVGINAQTHT---AANKDIINYTNRGQLITRIGAKTYLQTTNNSDQFMPFIAVNWLHQN-HNTGAQLSGK----SVENSSKNSAEFKIGVESKIDQRLHAWANINHQIGNYNTNDTNALVGIKYAF 902
4 -47.200IDP93819 beta-barrel outer membrane protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007855 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  11  4...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SNITHPDGHKETLQSFESHLSSHRITPCAKAISALLLVLGSTGAWANNYNQPKLTQEQQSQLQAMQQRQLQAILWERERQSTLRDLQSQAARQAQYLDSPAHKNGISEIDTVRNLAIIIPELFIELPESINIITK-HTELPESINIITKHTNATSQVIHEVISAVSPSEITALALATIIAVQKAEAEKEILRRKQNVSSIANMLLSNKTSTQDTPTQKNDNKDNKVDNDSLSTEVDNALAEVGNLGQIIVSNPISNLLFAAEPEATETAQKALSSPESAVPAQVPQAGSYLANQMAAQQMFITDNLQHRQREITGKEKVSSMWLNTTGAKSRFNSGTKSHRYAIQLGGTEWSSGGDDKGILGITAGLGKSTSHSHSSDGSVNGYNLGLYSIWYADNGPYIDLLAQYGWFHNQVK-APAGITGANYKSYVFTTALESGYKFQLLEKLFIQPKAKVSWQRMSGVQDKGSA---GAQVILEENNVVATQLGMRTSLELSNRTLQLSPSFEANWIHN-GNNKGVWLEST---NITPQGNNNIADLKLGIEANIDSNLQLWTHLGHQFGGHNYSDTQAMLGANYRF 635
5 -45.700IDP04415 gene: icsA (virG); IcsA (VirG), outermembrane protein exposed to the bacterial surface by a C-terminal autotransporter domain and involved in the movement of intracellular bacteria by binding to N-WASP [Shigella flexneri] CAC05837 [Shigella flexneri]  ali follow..  10  2............................................................................................................................................................................................................................................................................NQIHFCNMTQCSQGGAGELPTVKEKTCKLSFSPFVVGASLLLGGPIAFATPLSGTQELHFSEDNYEKLLTPVDGLSPLGAGEDGMDAWYITSSNPSHASRTKLRINSDIMISAGHGGAGDNNDGNSCGGNG-TGSDLSIINQGMIL---------------GGSGGSGADHNGDGGEAVTGDNLFIINGEIISGGHGGDSYSDSDGGNGGDAVTGVNLPIINKGTISGGNGGNNYGEGDGGNGGDAITGSSLSVINKGTFAGGNGGAAYG-------------------------------------YGYDGYGGNAITGDNLSVINNGAILGGNGGHWGDAINGSNMTIANSGYIISGKEDDGTQNVAGNAIHITGGNNSLILHEGSVITGDVQVNNSSILKIINNDYTGTTPTIEGDLCAGD----------------CTTVSLSGNKFTVSGDVSFGENSSLNLAGISSLEASGNMSFGNNVKVEAIINNWAQKDYKLLSADKGITGFSVSNISIINPLLTTGAIDYTKSYISDQNKLIYGLSWNDTDGDSHGEFNLKENAELTVSTIL-ADNLSHHNINSWDGKSLTKSGEGTLILAEKNTYSGFTNINAGILKMGTVEAMTRTAGVIVNKGATLNFSGMNQTVNTLLNSGTVLINPFLPDPVIVTGNMTLEKNGHVILNNSSSNVGQTYVQGNWHGKGGILSLGADNSKTDRLEIAGHASGITYVAVTNEGGSGDTLEGVQIISTDSSDKNAFIQKGRIVAGSYDYRLKQGTASGLNTNKWYLTSQMDNQESKQRPEAGSYIANLIAMNTMFSPSLYDRHGSTTGQLSETTMWIRTVGGHNEHNLATTANRMVYQIGGD---FTDHDGLHVGIMGAYGYQDSKTHNSRGTVSGYTAGLYSSWFQDTGLYMDAWLQYSWFNNT--VKGDGLTGEKYSSKGITGALEAGYIYPTIRALYLNPQVQITRHGVKANDYI---EHNGTMVTSSGGNNIQAKLGLRTSLI-KETLRKFEPFLEVNWKWSS-KQYGVIMNGM---SNHQIGNRNVIELKTGVGGRLADNLSIWGNVSQQLGNNSYRDTQGILGVKYTF 1102
6 -32.900IDP90430 gene: pmpD; Putative Outer Membrane Protein D [Chlamydia trachomatis D/UW-3/CX] CT_812 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  12  188......................................................................FASCSSLEQGGA----CAAQSILIHDC-HCTTAVNAEGSSANDHLGFGGGAFFVTGSLSGSLYMPAGDMVVANCDGAISFEGNSANFANGGAIAASGKVLFVANDKKTSFIENRALSGGAIAASSDIAFQNCAE--------KGNCAIGTEDKGSLGGGAISS------------LGTVLLQGNHGITCDKNESASQGGAIFGKNCQISDNEGPVVFRDSTACLGGGAIAAQEIVSIQNNQAGISFEGGKASFGGGIACGSFSSAGGASVLGTIDISKNLGTLCTTSDLGQMEYQGGGALFGENISLSENAGVLTFKDNIVKTFASNGKILGGGAILATGKGISFTGNARAPQALPTQEEFPLFSKKEGRPLSSGYSGGGAIVVFEQNRLQCSEEEATLLGCCGGGAVHGMDSTSIVGNSSVRFGVSGGAL-AGNGSVDFSRNIASLGGGALQASEGNCELVDNGYVLFRDNRGRVYGGAISCLRGDVVISGNKGRVEFKDNIATRLYVEETVEKVEEVEPAPEQKDNNELSFLGRAEQSFITAANQALFASEDGDLSPESSISSEELAKRRECAGGAIFAKRVRIVDNQEAVV-----------------SNNFSDIYGGAIFTGSLREEDKLDGQIPEVLISGNAGDVVFSGNSSKRDEHLPHTGGGAICTQNLTISQYNNVACSGGAVRIEDHGNVLLEAFGGDIVFKGNSSFRAQGSDAIYFAGKESHITALNATEGHAIVFHDALVFENLEERKSAEVLLINSRENPGYTGSLEAESKVPQCIHVQQGSLELLNGATLCSYGFKQDAGAKLVLAAGAKLKILDSGTPVQQGHAISKPEAEIESSSEPEGAHSLWIAKNAQTTVPMVDIHTISVDLASFSSSQQEGTVEAPQVIVPGGSYVRSGEVNTTGTGYENHALLKNEAKVPLMSFVASGDEASAEISNLSVSDLQIHVVTPEIEEDTYGHMGDWSEAKIQDGTSWNPTGYRLDPQKAGALVFNALWEEGAVLSALKNARFAHNLTAQREFDYSTNVWGFAFGGNLVAIDGYKGAYGGASAGVDIQLM---EDFVLGVSGALGKMDSQKFDAEVSRKGVVGSVYTGFLAGS-WFFKGQYSLGETQNDMKTRYGVESSASWTSRGVLADALVEYRSLVGYALHFNPYVEVSYASMKFPGFT-EQGREARSFEDASLTNITIPLGMKFELAFIKGQFSEVNSLGISYAWEAYRKVQLLEAGFDWEGAPMDLPRQELRVALENNTEWSSYFSTVLGLTAFCGGDSKLGYEANTGLRLIF 1531
7 -32.800IDP01900 gene: apeE; outer membrane esterase [Salmonella typhimurium LT2] STM0570 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  347.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAPVQATYLNQSVQSMAQGSRTTLDSRYQQLRQGENPVGMFGGYSGGYQRYDNDGNGNHNNLTVGVDYQL---NEQVLLGGLIAGSLDKQHPDNYRYDARGFQAAVFSHL-RAGQAWLDSDLHFLSAKFS---ALRRVEEGETNGRLWGARLTSGYDFVMVPWLTTGPMLQYAWDYSHVNGYSEKLNTSSMRFGDQNAHSQVGSAGWRLDLRH----SIIHSWAQINYRRQFGDDTYVANGGLKSSRDGKTQDKNWVDIAIGADFPLSATVSAFAGLSQTAGLSDGNQTRYNVGFSARF 656
8 -29.700IDP90435 gene: pmpG; Putative Outer Membrane Protein G [Chlamydia trachomatis D/UW-3/CX] CT_871 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  10  47..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................PYTVIGDPSGTTVFSAGELTLKNLDNSIAALPLSCFGNLLGSFTVLGRSLTFENIRTSTNGAALSDSANSGLFTIEGFKELSFSNCNSLLAVLPAATTNNGSQTPTTTSTPSNGTIYSKTD---LLLLNNEKFSFYSNLVSGDGGAIDAKSLTVQGISKLCVFQENTAQADGGACQVVTSFSAMANEAPIAFIANVAGVRGGGIAAVQDGQQGVSSSTSTEDPV---------SFSRNTAVEFDGNVARVGGGIYSYGNVAFLNNGKTLFLNNVASPVYIAAEQPTNGQASNTSDNYGDGGAIFCKNGAQAAGSNNSGSVSFDGEGVVFFSSNVAAGKGGAIYAKKLSVANCGPVQFLGNIANDGGAIYLGESGELSLSADYGDGNLKRTAKENAADVNGVTVSSQAISMGSGGKITTLRAKAGHQILFNDPIEMANGNNQPAQSSEPLKINDGEGYTGDIVFANGNSTLYQNVTIEQGRIVLNSLSQTGGSLYMEAGSTLDHLSLSSLLANNAVTNPPTNPPAQDSHPAIIGSTTAGSVTISDRYDWLGSNQKIDVLKLQLGTQPSANAPSDLTLGNGSWKLAWDPNTANNGPYTLKATWTKTGYNPGPERVASLVPNSLWGSILDIRSAHSAIASVDGRSYCRGLWVSGVSDRDALGQGYRYISGGYSLGANSYFGSS----MFGLAFTEVFGRSDYVVCRSNHHACIGSVYLSTKQA----AFIRASYGFGNQHMKTTFAEESDVRWDNNCLVGEIGVGLPIVITPS--LRPFVQAEFSYADHESFT-EEGDQARAFRSGHLMNLSVPVGVKFDRCSSTHPNKYS--FMGAYICDAYRTITLLSHQETWTTDAFHLARHGVIVRGSMYASLTSNIEVYGHGRYEYRDT-SRGYGLSAGSKVRF 1013
9 -27.300IDP90436 gene: pmpH; Putative Outer Membrane Protein H [Chlamydia trachomatis D/UW-3/CX] CT_872 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  25..................................................................................................................................................................................................................................................................................................................................................................................................SSPQVLTPNVTTPFKGDDVYLNGDCAFVNVYAGAENGSIISANGDNLTITGQNHTLS----------------TDSQGPVLQNYAFISAGETLTLKDFSSLMFSKNVSCGEKGMISGKTVSIS------GAGEVIFWDNSVGYSPLSIVPASTPTPPAPAPAPAASSSLSPTV--------SDARKGSIFSVETSLEISGVKKGVMFDNNAGNFGTVFRGNSNNNAGSGGSGSATTPSFTVKNCKGKVSFTDNVASCGGGVVYKGTVLFKDNEGGIFFRGNTAYDDLGILAATSRDQNTETGGGGGVICSPDDSVKKGSIVFDYNFAKGRGGSILTKEFSLVADDSVVFSNNTAEKGGGAIYAPTIDISTNGGSILFERNRAAEGGA-VSEASSGSTGNLTLSASDGDIVFSGNMTSDRPGERSAARILSDGTTVSLNASGLSKDPVVQNNSAAGASTPSPSSSSMPGAVTINQSGNGSVIFTAESLTPSEKLQVLNSTSNFPGALTVSGGELVVTEGATLTTGTITATSGRVTLGSGASLSAVAGAANNNYTCTVSKLGIDLESFLTPNYKTAILGADGTVTVNSGSTLDLVMESEAEVYDNPLFVGSLTVTLSSSSASNGVTKNSVTINDADAAHYGYQGSWSADWTKPPLAPDAKGMVPPNTNNTLYLTWRPASNYGE-QRKGELVPNSLWVAGSALRTFTNGLEHYVSRDVGFVASLHALGYTQDDRDGFLARYGGFQATAASHYENGS---IFGVAFGYGQTKSRMYYSKDAGNMTMLSCFGRSIKGTETVMYWETAYGYSVHRMHTQYFNHSKCHWHNNNYYAFVGAEHNFQFARDYELTGFMRFEMAGGWSSSTR-ETGSLTRYFARGSGHNMSLPIGIVAHAVSHVRRSPPSKLLNMGYRPDIWRVTEIIANGVKTPIQGSPLARHAFFLEVHDTLYIHHFGRAYMNYSLDARRR-QTAHFVSMGLNRIF 1016
10 -23.800IDP90383 gene: pmpA; Putative outer membrane protein A [Chlamydia trachomatis D/UW-3/CX] CT_412 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  11.....................................................................................................................................................................................................................................................................................................................................................................YDQRQLSQSPNTNFLVHHPYLTLIPKFLLGALIVYAPAEMELAISGHKQGKDRDTFTMISSCPEGTNYIINRKSDFSLLNKVSSGGAFRNLAGKISFLGKNSSASIHFKHININGFGAESSIEFTDLRKLVAFG---ESTGGIFTAKEDHIAFRNNITKGNGGVIQLQGDMKGSVSFVDQRGAIIFTNNQAVTSSSMKHSGRGGAISGDFAGSRILFLN-----------NQQITFEGNSAVHGGAIYNKNGLVEFLGNAGPLAFKENTTIANGGAIYTSNFKANQQTSPILFSQNHANKKGGAIYAQYVNLEQNQDTIRFEK---NTAKEGGGAITSSQCSITAHNTIIFSDNAAGDLGGGAILLEGKKPSLTLIAHSGNIAFSGNTMLHITKKASLDRHNSILIKEAPYKIQLAANKNHSIHFFDPVMALSASSSPIQINAPEYETPFFSPKGMIVFSGANLLDDAREDVANRTSIFNQ--------------------------------------PVHLYNGTLSIENGAHLIVQSFKQTGGRISLSPGSSLALYTMNSFFHGNISSKEPLEINGLSFGVDISPSNLQAEIRAGNAPLRLSGSPSIHDPEGLFYENRDTAASPYQMEILLTSDK------------------IVDISKFTTDSLVTNKQSGFQGAWHFSWQPNTINNTKQKILRASWLPTGEYVLESNRVGRAVPNSLWSTFLLLQTASHNLGDHLCNNRSFGVLIGGTGAEMSTHSSEEESFISRLGATGTSIIRLTPSLTLSGGGSFGDSFVADLPEHITSEGIVQNVGLTHVWGP-LTVNSTLCAALDHNAMVRSKKDHTYGKWDTFGMRGTLGASYTFLEDQTMRVFSFANIEATNILQRAFT-ETGYNPRSFSKTKLLNIAIPIGIGYEFCLGNSSFALLGKGSIGYSRDIKRENHLAMNDFAWTTNGCSVPTSAHTLANQLILRYKACSLYITAYTINREGK-NLSNSLSCGGYVGF 975
11 -23.000IDP90437 gene: pmpE; Putative Outer Membrane Protein E [Chlamydia trachomatis D/UW-3/CX] CT_869 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  39....................................................................................................................................................................................................................................................................................................................................................................................................................................................................SLSNKISLTGDTHNLTNCYLDNLRYILAILQKTPNEGAAVTITDYLSFFDTQKEGIYFAKNLTPESGGAIGYASPNSPTVEIRDTIGPVIFENNTCCRLFTWRNPYAADKIREGGAIHAQNLYINHNHDVVGFMKNFSYVQGGAISTANTFVVSENQSCFLFMDNICIQTNTAGKGGAI----AGTSNSFESNNCDLFFINNACCAGGAIFSPICSLTGNRGNIVFYNNRCFKNVETASSEASDGGAIKVTTRLDV-----TGNRGRIFFSDNITKNYGGAIYAPVVTLVDNGPTYFINNIANNKGGAIYIDGTSNSKISAD-RHAIIFNENIVTNVTNANGTSTSANPPRRNAITVASSSGEILLGAGSSQNLIFYDPIEVSNAGVSVSFNKEADQTGSVVFSGATVNSADFHQRNLQTKTPAPLTLSNGFLCIEDHAQLTVNRFTQTGGVVSLGNGAVLSCYKNGTGDSASNASITLKHIGLNLSSILKSGAEIPLLWVEPTNNSNNYTADSLSDVKLSLIDDYGNSPYESTDLTHALSSQPMLSISEASDNQLQSENIDFSGLNVGLWTWGWAKTQDPEPASSATITDPQKANRFHRTLLLTWLPAGYVPSPKHRSPLIANTLWGNMLLATESLKNSAELTPSGHPFWGITGGGLGDPRENHPGFHMRSSGYSAGMIAGQTHT-----FSLKFSQTYTKLNERYAKNNVSSKNYSCQGEMLFEGFLLTKLVGLYSYGDHNCHHFYNLTSQGTFRSQTMGGAVFFDLPMKPFGSILTAPFLGALGIYSSLSHFTEVGAYPRSFSTKTPLINVLVPIGVKGSFMNATHR-PQAWTVELAYQPVLYRQEQLLASKGIWFGSGSPSSRHAMSYKISQQTQPLSWLTLHFQYHGFYSSS-TFCNYLNGEIALRF 964
12 -21.800IDP90434 gene: pmpF; Putative Outer Membrane Protein F [Chlamydia trachomatis D/UW-3/CX] CT_870 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  56................................................................................................................................................................................................................................................................................................................................................................................QNIVLSNLQSNGTGACTISGNQIFSNSVNTTADSGGAFDMVTTSFT-NLLFCNNYCTHNKGGGAIRSGGP--------LNNQDVLFYNNISAGAKYVGTGDHNEKNRGGALYATTITLTGNRTLAFINNGGAISADTQIS----ITDTVKGILFENNHTLNHIPYTQAENMARGGAICSRRDLCSISNNSGPIVFNYNQGGKGGAISATRC----------------VIDNNKERIIFSNNSSLGWSQSSSASNGGAIQTTQGFTLRNNKGSIYFDSNTATHAGGAINCGYIDIRDNGPVYFLNNSAAWGAAFNLSKPRSATNYIHTGTGDIVFNNNVVFTLDGNLLGKRKLFHINNNEILSLGAKKDTRIYFYDLFQWERVKENTSNNPPSPTSRNTITVNPETEFSGAVVFSYNQMSSDIRTLMGKEHNYIKEAPTTLKFGTLAIEDDAELEIFNIPFTQNPTSLLSGATLTVGKHGKLNITNLGVILPIILKEGKSPPCIRVNPQDMTQNTGTGQTPSSTSSISTPMIIFNGRLSIVDENYESVYDSMDLSRGKAEQLILSIETTNDGQLDSNWQSSLNTSLLSPPHYGYQGLWTPN-------------ITTTYTITLNNNSSAPTSATSIAEQKKTSETFTPSNTTTASIPNIKASAGSGSGSASNSGEVTITKHTLVVNWAPVGYIVDPIRRGDLIANSLVHS--------GRNMTMGLRSLLPDNSWFALQGAATTQKRLSYHGYSSASKGYTVSSQASGAHGH---KFLLSFSSDKMKEKETNNRLSSRYYLSALCFEHPMFDRIALIGAAACNYGTHNMRSFTKKSSKGKFHSTTLGASLRCELRDSMLRSIMLTPFAQALFSRTEPASIRESGDLARLFTLEQAHTAVVSPIGIKGAYSSDTWP-TLSWEMELAYQPTLYWKRLLIQNNGSWVTTNTPLAKHSFYGRGSHSLKFS-HLKLFANYQAEVATS-TVSHYINAGGALVF 1034
13 -17.700IDP90331 gene: pmpI; Putative Outer Membrane Protein I [Chlamydia trachomatis D/UW-3/CX] CT_874 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  1......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MRPDHMNFC----CLCAAILSSTAVLFGQDPLGETALLTKNPNHVVCTFFEDCTMESLFPALCAHASQDDPLYVLGNSYCWFVSKLHITDPKEALFKEKGDLSIQNFRFLSFTDCSSKESSPSIIHQKNGQLSLRNNGSMSFCRNHAEGSGGAISADAFSLQHNYLFTAFEENSSKGNGGAIQAQTFSLSRNVSPISFARNRADLNGGAICCSNLICSGNVNPLFFTGNSATNGGAICCISDLNTSEKGSLSLACNQETLFASNSAKE-----KGGAIYAKHMVLRYNGPVSFINNSAKIGGAIAIQSGGSLSILA-----------GEGSVLFQNNSQRTSDQGLVRNAIYLEKDAILSSLE--ARNGDILFFDPIVQESSSKESPLPSSLQASVTSPTPATASPLVIQTSANRSVIFSSERLSEEEKTPDNLTSQLQQPIELKSGRLVLKDRAVLSAPSLSQDPQALLIMEAGTSLKTSSDLKLATLSIPLHSLDTEKSVTIHAPNLSIQKIFLSNSGDENFYENVELLSKEQNNIPLLTLSKEQSHLHLPDGNLSSHFGYQGDWTFSWKDSDEGHSLIANWTPKNERQSTL------NTLWNTYSDSSGKPIDNWHHRSLGYLFGISTHSLDDH---SFCLAAGQLLGKSDSFITSTETTSYIATVQAQLATP--MKISAQACYNESIHELKTKYRSEGFGSWHSVAVSGEVCASIPIVSNGSGLFSIFSKLQGFSGTQDGFE-ESSGEIRSFSASSFRNISLPMGITFEKKSQKTRNYYY--FLGAYIQDLKRDVVLLKNAVSWDAPMANLDSRAYMFRLTNQRALH-RLQTLLNVSYVLRGQ-SHSYSLDLGTTYRF 878
14 -15.400IDP90328 gene: pmpB; Putative outer membrane protein B [Chlamydia trachomatis D/UW-3/CX] CT_413 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  10  286......................................................................FSINKATKDGGA----IFAEKDVSFENITSLKVQTNGAEEKGGAIYAKGDLSIQSSKQSLFNSNYSQGGGALYVEGDINFQDLEEIRIKYNKAGTFETKKITLPKAQASAGNADAWASSSPQSGSGATTVSNSGDSSSGSDSDTSETVPATA----KGGGLYNKATDVGGGAYVKGTLTCENSHRLQFLKNSSDKQGGG-IYGEDNIT-------FQENTAKEEGGGLFIKGTDKALTMTGLDSFCLINNTSEKHGGGAFVTKEISQTYTSDVETIPGITPVHGETVITGNKSTGGNGGGVCTKRLALSNLQSISISGNSAAENGKNTAKKGGGIYAKKAKMSRIDQLNISENSATEIGGGICCKESLELDA------VSLSVTENLVGKEGGGLHAKTVNISNLKSGFSFSNNKA--------NSSSTGVATTASAPAAAAASLQAAAAAVPSSPATPTYSGVVGGAIYGEKVTFSQCSGTCQFSGNQAIDNNPSQSSTSLSIGSSDAGTSYIFSGNSVSTGKSQTTGQIAGGAIYSPTVTLNCPATFSNNTASMATPKTSSEDGSSGNSIKDTIGGAIAGTAITLSGVSRFSGNTADLGAAIGTLANA---NTPSATSGSQNSITEKITLENGSFIFERNQANKRGAIYSPSVSIKGNNITFNQNTSTHDGSAIYFTKDATIESLGSVLFTGNNVTATQASTSGQNTNTANYGAAIFGDPGTTQSSQTDAILTLLASSGNITFSNNSLQNNQGDTPASKFCSIAGYVKLSLQAAKGKTISFFDCVHTSTKKIGSTQNVYETLDINKEENSNSSELHENKSYIPQNAILHNGTLVLKEKTELHVVSFEQKEGSKLIMKPGAVLSNQNIANGALVINGLTIDLSSSPPELRIVATTSSASGGSGVSSSIPTNPKRISAAAPSGSAATTPTMSENKVFGSDLDVPLIKLPTNTSDVQVYDLTLSGDLGTWTLDSNPQTGKLQARWTFDTYRRWVYIPRDNHFYSILGSQNSMIVVKQGLINNMLNNARDDIAYNNFWVSGVGTGTPLSEEFSYYSRGTSVAIDAKPRQDF---ILGAAFSVGKTKMHNYFHKGSEYSYQASVYGGKFLALPFLIQGVVSYGHIKHDTTTLYPSRNKGDWEDLGWLADLRISMDLKEPSK--ITVYGELEYSSIRQKQFT-EIDYDPRHFDDCAYRNLSLPVGCAVEGAIMNCNILMYNKLALAYMPSIYRNNRVLSSNEAGQVICGVPTRTSARAEYSTQLYLGPFWTLYGNYTIDVGMY-TLSQMTSCGARMIF 1751
15 -13.200IDP00401 putative hemolysin YPO2490 [Yersinia pestis CO92]  ali follow..  12  1MNKLYRIIFNKVRGMMIVVADIAASGRASSSPSSALSTLSFSLLLALGCVSLSVQAAIV----------D--------APGNQQPTIINSNG--------TPQVNIQAPSSG------G------------VSRN-------------VYS----------QFDVDGRGVILNNGHGVNQTELG------------------GDGNPWLARGEASLNEVNSRDPSKLNGYI-------------------------------VAGRKAQVVIA-----------GITCEGCGFIN--------------------------------------ANRVTLTTGQAQLNNGQLTGYDVERGD-IVIQGTGMDSSRQDHTDLIARSVKVNAG--IWANELSVTTGRNQVDAAHQNIN-AVDVAHLGGMYA-GKIRLIGTESGHNAGEIGASAGDITITADGMNSGQINSSQQLVVNTAQGNTQLTTAGTLSNSGTLAA--GGDTSVRAAEVNSTRNSVLGAGVKSDNSAITSGTLSVEASGKITAQGKNISGTAQRFTAHRLDLSGSQTQSRDITLIAQGGEIDLTGAELLASDRLSATTALLRTDNASLIAEQITLDAQALSNVGGLIAHTGTTDFNLNLPGDVDNRGGTLLSSGTLSLQAESLNSNGNSLLGAGVQSDGRLTEIGDLRVTTRQDLIAHGQTLAAGAMALTGSRIDLADSYTQAREMTLTANRGDISTQRATVLALDTLSINTAQTLNNQGGTLAGNTLALD-----LGQFDNQGGQVTASQDLTIDLQRDFSHQAGSTLQAGRDLTLTSLGAVTNDGQLVAGGTLSTHSDSLLNSGNLIATQAELNATGALINHGEILTLGGLDTDSN....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 753
16 -13.100IDP91527 gene: etpA; EtpA [Escherichia coli ETEC H10407] AAX13509 [Escherichia coli ETEC H10407]  ali follow..  13  1MNRIYKLKFDKRRNELVVVSEITTGVGNAKATRRGVRAMALSLLSGMMIMAHPAMSQIVAGSANWNSF-DIGKGN-QFQPSSSAVALNRVVGGGESQI-------MGNLKAN------GQVFLVNPNGVL------------FGEGAS------------------------VSTSGFVASTRDIKNDDFMNRR----FSGGQKAGAAIVN-QGELTTNAGGYIVLAADRV--------------SNSGTIRTPGGKTVLAA--SEDNGGLMVVNALVEN----GLVSARDGQVYLTALGRGMLMNTVL------------------------NVSGVVEASGMH-----------QDGNIVLDGGDSGVVHLSGTLQADNAS---------GQGGKVVVQGKNILLDKGSNIT-----ATGGQ----GGGEVYVGGGWQGKDSNIRNADKVVMQGGARIDVSATQQGN----GGTAVLYTNFHGQISAKGGETGGNGGRVETSSHGNTVSASAKKGKAGNWLLDSADITIVNGSNVSKTETTQSPPHTQFAPTAAGSAVSNTSINNRLNNGTSVTILTHRTRTGTAQGGNITVNAAINKSNGSDVNLTLQAGGNITVNNSITSTEGKLNVNLSGARTSNNITTNGGDITVGTTNTSNRVNISINNTTLNASNGNIQLTGTGTDSGILFAGNNRLTASNIALTGNSTSGNAINLTGTATLNATN................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 666
17 -12.500IDP00165 gene: acfA; accessory colonization factor AcfA VC0844 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  6..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SAIFLFTTLSANAAPYIGLELGIGTANHSFETNYQSDAVSNPNMEDMFLGGLIGYKF--NDNFSFE----INYSSYKLEDQYSKFIGIESEIEAKQLAKTNIKVGVT--------------HTQYEAYSGKYEELELLLNDDIELETGLKKNRFGALFSLGLDYNLIPELSVGTELRYQFDKYNDVL-SISLNSKYYF 215
18 -12.000IDP06040 hypothetical protein jhp0368 [Helicobacter pylori J99] NP_223087 [Helicobacter pylori J99]  ali follow..  10  1........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MGLKKRA------SLMGFCAGYYKYIKYYKAYEDKEVEELIRDLKRANAKSGLILGINTGFFYNHEIMVKTNSSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIGRRIYIQYYGGAPKKAGFG----SVGFQSVMLNGDFLLDFPLPFVGKYLYMGGYM-----------LGLGVVAHGVNYTAEWGMSFNAGLALTVLEKNRIEFEFKSNSSKETWWGAIASIGYQYVF 240
19 -11.800IDP01738 putative protease [Salmonella typhimurium LT2] STM1484 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  1...................................MHKTIAVLLGIVCFLPVMAKAGGAETD----------------DASDVKTLFFNHDDRVVADPTQSPWDAIGQLETASGNLCTA--TLISPHIALTAGH-----RFVARKGVWRYEIHGPPAAASWDFGLVILRYPPSGITPVPLFTGDKAALTAALKAADRKVTQSGYP----------------------EDHLNALYSHQDCVVTGWAQNAVLSHQCD-----TLPGDSGSPLLLHTD--SGWQLIGVQSSAPAAKD............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 249
20 -11.600IDP00217 putative pepetidase YPO2319 [Yersinia pestis CO92]  ali follow..  12  1......................................MRLFLLLLSLLLISITTAFAL------------DKPDGSNSIEDQTALFFGKDDRTVTNSRQWPWEAIGQVETASGNPCTA--TLISPRLVLTAGH-----RFISDKGHWKYQITDPPAAAAYDFALIQLTNAAPITKALKLVNRKVTQAGYPLDNLNTLYKHEDCLVTGWAQQGVLAHQCD-----------------------------------------TLPGDSGSPLLLKNG--NSWSLIAIQSSAPAAKERYLADNRALSVTAINNRLKKLVNKIADTTQ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 278
21 -11.400IDP93831 cellulose synthase subunit BcsC [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001008212 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  12  923.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SSSLLAFAG--TRDPNTNVTWGGV-----------------RANGVSLGASYDRGE---GVWSDLSYHYLTGQNVADNQRRFMTGYYYKLINEDNRRFTI-GMWWHYQKDLS------------------------GYTLGQGGYYSPQKYLSLA-----NYRQRTDNWSWELG--------GSVSLS---HSATNDRARYP------LQSLLNNSIKSISDRNDLDYGDSSNGVGYTLRALIERRLSSHWTLGAGVDIQQAKDYT-PSHALIYLRYSM 1140
22 -11.100IDP01854 gene: pagC; virulence membrane protein PAGC precursor [Salmonella typhimurium LT2] STM1246 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  35...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SKVQDFKNIRGVNVKYRYED--------DSPVSFISSLSYLYGDRQASGSVEPEGIHYHDKFEVKYGSLMVGPAYRLSD-NFSLYALAGVGTVKATFKEHSTQDGDSFSNKISSRKTGFAWGAGVQMNPLENIVVDVGYEGSNISSTKIN-GFNVGVGYRF 185
23 -10.600IDP06043 hypothetical protein jhp0370 [Helicobacter pylori J99] NP_223089 [Helicobacter pylori J99]  ali follow..  12  13..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IIGLQATDYDNLEEENQQLDEKINNLKRQLTEKGVSPKEMDKDKFEEEYLERTYPKISLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLD-----------------------------RYGANAPSAFKNNININAPVSMISVKFGYQKYFVPYFGTRFYGDLLLGGGAVGSFFYVLGAMNTDLLFDDFKTKKHFLGVYAGFGIG--------LMLYQDKPNQNGRNLIVGGYSSPNFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKISANNQFKRSSFLLVNYAFIF 313
24 -10.200IDP90997 gene: ompX; outer membrane protein X [Yersinia pestis KIM 10] y1682 [Yersinia pestis KIM10+]  ali follow..  13  31...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VSGGYAQSDYQGVANKSSGFNLKYRYEWS-----------DSQLGYITSFTHTEKSGFGDEAVYNK-----AQYNAITGGPAYRIND-WASIYGLVGVGH-----GRFTQNESAFVGDKHSTSDYGFTYGAGLQFNPAENVALDVSYEQSRIRNVDVG-TWVAGVGYTF 176
25 -9.090IDP06042 hypothetical protein jhp0369 [Helicobacter pylori J99] NP_223088 [Helicobacter pylori J99]  ali follow..  10  111.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KSGFFIGVILGDIGINA--NPYEKFELLSNIQASPLLYGLRSGYQKYFANGIS---YGEYLGGAMKGFKSDSLASYQTASLNID-DKEKRFALGIFGGVGV---------------------GWNGMYQNLKEIRGYSQPNAFGLVLNLGVSMTLNLKHRFELALKQTFLYYFKSTNIYYISYNYLL 289

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.