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Query: IDP04418 gene: purT; phosphoribosylglycinamide formyltransferase 2 [Francisella tularensis subsp. tularensis SCHU S4] FTT1767c [Francisella tularensis subsp. tularensis SCHU S4], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNISNIKIMLLGSGELGKEFIIAAQRLGIHTIVVDRYKNAPAMQVAHESYVIDMLNSDALEQLILAKNPTYIVPEIEAINTDSLVKLEAHNFNIIPCAKAAKLTMDRQGIRALAAQQLNLQTSKFAFANSEQEYLDVIQSIGLPFVIKPVMSSSGKGQSIVKEHNEIKKAWDYAQNGSRGHAKGVIVEQFIDFDYEITLLTVRHKDGTSFCDPIGHIQKDGDYRFSWQPHTMPDTALAKSQEIAKEITDALGGYGVFGVELFIKGDEVFFNEVSPRPHDTGMVTLISQNINEFELHLRAIVGLPIPDIQTLQPSASAAILLEGDTANASICGIDKALADANVDIRIFGKKEIHGKRRMGVVLAKAQNTHIALETSKQALAHIHLTKLast
1 -106.000IDP04418 gene: purT; phosphoribosylglycinamide formyltransferase 2 [Francisella tularensis subsp. tularensis SCHU S4] FTT1767c [Francisella tularensis subsp. tularensis SCHU S4]  ali  100  1MNISNIKIMLLGSGELGKEFIIAAQRLGIHTIVVDRYKNAPAMQVAHESYVIDMLNSDALEQLILAKNPTYIVPEIEAINTDSLVKLEAHNFNIIPCAKAAKLTMDRQGIRALAAQQLNLQTSKFAFANSEQEYLDVIQSIGLPFVIKPVMSSSGKGQSIVKEHNEIKKAWDYAQNGSRGHAKGVIVEQFIDFDYEITLLTVRHKDGTSFCDPIGHIQKDGDYRFSWQPHTMPDTALAKSQEIAKEITDALGGYGVFGVELFIKGDEVFFNEVSPRPHDTGMVTLISQNINEFELHLRAIVGLPIPDIQTLQPSASAAILLEGDTANASICGIDKALADANVDIRIFGKKEIHGKRRMGVVLAKAQNTHIALETSKQALAHIHLTK 386
2 -100.000IDP02449 gene: purT; phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis CO92] YPO1775 [Yersinia pestis CO92]  ali follow..  52  8LRPGATRVMLLGAGELGKEVAIECQRLGLEVIAVDRYADAPAMHVAHRSHVINMLDGAALKQLVAQEKPHYIVPEIEAIATDMLVELEKMGQHVVPCAEATRLTMNREGIRRLAAETLQLPTSSYRFADTDSAFFQAVRDIGYPCIVKPVMSSSGKGQSLIRSEEHLQAAWEYAQQGGRAGSGRVIIEGLVHFDFEITLLTIRAVDGIHFCAPIGHRQEDGDYRESWQPQAMSDIALQRAKEISAQVVTALGGFGLFGVELFVCGDDVIFSEVSPRPHDTGMVTLISQNMSEFALHVRAFLGLPIGTIRQYGAAASAVILPELTSQNI-TYRGLETALIGDTQIRLFGKPEIAGKRRLGVALAVADNIETAIEVAKKAAGNIEVSG 392
3 -88.500IDP00922 gene: purK; phosphoribosylaminoimidazole carboxylase ATPase subunit STM0533 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  24  2.....KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPTAVPVQ----------------------QSVITAEIERWPETALTRELARH-PAFVNRDVFPIIADRLTQKQLF-DKLGLATAPWQLLTSTDEWSGIFDRLGELAIIKRRVGYDGRGQWRLRADETGQLPDD--------CYGECIVERGIHFSGEVSLVGARAHDGSTVYPLTHNLHQDGILRTSVAFPQANAEQQEQAESMLSAIMQALNYVGVMAMECFITPEGLLINELAPRVHNSGHWTQNGASISQFELHLRAITGLPLPAPVINAPSVMINLIGSELN--------YDWLKLPLVHLHWYDK-AVRPGRKVGHLNLTDSDTSRLSATLEALSPLLPG.. 341
4 -88.400IDP04479 gene: purK; phosphoribosylaminoimidazole carboxylase ATPase subunit PurK [Yersinia pestis CO92] YPO3077 [Yersinia pestis CO92]  ali follow..  25  2.....KPVCVLGNGQLGRMLRQAGEPLGIAVYPVGLDAEPEAVPYQ----------------------HSVITAEIERWPETALTRELATH-TAFVNRDIFPRLADRLPQKQLL-DSLGLATAPWQLLSSASEWPEVFATLGELAIVKRRVGYDGRGQWRLRPGEQGTLPPD--------AYGECIVEQGINFSGEVSLIGARSHQGESFYPLTHNLHEDGILRMSVALPQPNSKLQQQAEKMLSAIMDKLNYVGVMAMECFIVGDRLLINELAPRVHNSGHWTQNGASISQFELHLRAILDLPLPQPVVNTPSAMVNLIGTPVN--------IQWLSLPLVHLHWYDK-EVREGRKVGHLNLNDPEGTALSASLAALAPLLPAEY 343
5 -88.200IDP04645 gene: purK; phosphoribosylaminoimidazole carboxylase ATPase subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0897 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  25  1.....MKIGIIGAGQLARMLSLAGTPLGLEFHCLGKNGDCAE-EVVKTVTDIELTKVNDVVAWA--KQFDVITFENENISHELIKAINH-EVSVYPSAKAIAISQDRLLEKSFM-QDHGIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRGYDGKGQFVIRSQEDITKAWDVL----KDAPDGLIYEAFVDFDYEVSQICTADLKGNIFYPLARNTHKQGIIVESEAPF-ENVVLAEKAQQIAKILVKEFAYVGTLAIEFFVKGDELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGLILGDTTSRKTVMLNCIGGMP--------ATKDLAALDRVKIHSYNK-EPRKGRKVGHLNLNLNDETDEYQLLQVK........ 356
6 -49.400IDP90725 acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae O1 biovar eltor str. N16961] VC0295 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  18  3.....DKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVADESICISYLNIPRIISAAEVTGAVAIHPGYGFLNADFAEQVERSGFIVGPRAETIRLMGDKVSAINAM-KKAGVPCVPGSD-NDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAAFNNDMVYMEKFLENPRHVEVQVIADGQGNAIHERDCSMQRRHQKVVEEAPAPITEEMRKFIGERCTRACIEIGYRGAGTFEFLYENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSDIKIRGHAVECRINAEDPERFLPCPGKIERFHAPESHIYSGYTVPAHYDSMIGKLITYGENRDVAIARMRNALNEMIV.. 411
7 -46.900IDP90722 gene: accC; biotin carboxylase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1290c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  17  1..MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLADASICISYLNIPAIIAAAEIAEADAIFPGYGFLNQNFVEICAKHNIKIGPSVEAMNLMSDKSKAKQVM-QRAGVPVIPGSALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHERDCSMQRRHQKLIEESPAILDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSIKLNGHSIECRITAEDSKTFLPSPGKITKYIPPESHCYQDYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELLI.. 411
8 -46.600IDP02328 acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA2548 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  17  3.....QKILIANRGEIAVRIMKTCQKLGIRTVAIYSEADENALHVANEAYLVSYLNLEKIIEIAKKTNAEAIHPGYGLLNPSFPVRCKEEGIVIGPSEEIITKMGSKIESRIAM-QAADVPVVPGINIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAFFGNGEMYLERYIADAHHIEIQLLADTHGNTVYERECSVQRRNQKVIEEAPSPLDEGTRKAMGEIAVQAAKALGYTNAGTVEFLVDQKNFYFLEMNTRLQVEHPVTEEITGLDLVEQQLLIAYGEKLSDIKRSGHAIEARIYAEDPKTFFPSPGKITDLTLPDHFLENQVTITPFYDPMIAKVIAHGETREEAISKLHDALEELKV.. 409
9 -46.200IDP02748 gene: accC; acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA4408 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  17  3.....KKVLIANRGEIAVRIIRACKEMDIETVAIYSEADKESLHVADEAYCVSYLNLTNIISVAKLTGCDAIHPGYGFLNADFAELCRECNLIIGPSPEAISKMGTKDVARDTM-KEAGVPIVPGSIIKNTEEAIELANQIGYPVIIKATAGGGGKGIRVARHEEELVKGIQITQQEAAFGNPGVYLEKYVEDFRHVEIQIMADTHGNAIHERDCTIQRRLQKLLEESPSPLDENVRKQMGEAAVKAAVAVDYTGAGTVEFIYETKSFYFMEMNTRIQVEHPVTEMVTGVDLIKEQILVASGEKLSEVQFNGWAIECRINAENPAKKPSPGKVEMYLPPGGFGIRV-GYSIPPFYDSMAKLIVHGKTREEAIAKMKRALSEFVV.. 413
10 -33.400IDP00671 gene: carB; carbamoyl phosphate synthase large subunit SACOL1215 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  4.RNDIKTILVIGSGPIGTQACLALKEEGYRVILVNSNPATIMTDIADKVYIEPLT-HDFIARIIRKEQPDALLPTLGGIQLHESGVLQDNNVQLLTELTSIQQAEDREMFRTLM-NDLNVPVPESDIVNTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYS--PATQCLLEKSIAGFKEIEYEVMRDKNDNAIMENIDPVGIHTGDSIVVAPSQLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHDYYIIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEMLNPITGTSYAAFEPTLDYVISKIPRFPFDKFEKGEREL-GTQMKATGEVMAIGRTYEESLLKAIRSLEYGVHHLGLP. 410
11 -31.800IDP90592 gene: carB; carbamoyl phosphate synthase large subunit [Vibrio cholerae O1 biovar eltor str. N16961] VC2389 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  554NPTDKDKIMVLGGGYCCVHAALALREDGYETIMVNCNPETVSTDTSDRLYFEPV-TLEDVLAIVRVEKPKGVIVQYGQTPLKLARALEAAGVPVITSPDAIDRAEDRERFQQAV-QRLGLKQPDNATVTAIEQAIEKSREIGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVS--NESPVLLDRFLDDATEVDVDAICDGERVVIGGIMEHIEQAGV-SACSLPAYLSQEIQDKMREQVEKLAFELGVRGLMNIQFAVKDNEVYLIEVNPRAARTVPFVSKATGAPLAKIAARVMVGQTLEQQGFTKEIIPPYY----------------SVKEVVLPFNKFPGVDPLLGPEMGEVMGVGATFAEAYAKAELGCG...... 935
12 -30.500IDP90807 gene: carB; carbamoyl phosphate synthase large subunit [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0279 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  15  4.RTDIKSILLIGSGPIGTQAAKTLKELGYRVVLINSNPATIMTDFADATYI-EPITKESILSIIKKEKIDAILPTMGNVAMEVYESGLLGDVKLGANPEAIKKGEDRQVFKECM-KKIGMDLPKSMYAYNYDEALKAVDEIDFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALS--PIHEILIEESLLGWKEYEMEVIRDRADNCIIENIDPMGVHTGDSITIAPALLTDKEYQVMRNASFAILREIGVDGGSNVQFAIKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIKNDITGTPASFEPVIDYIVTKIPRF------TFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQKALCSLER..... 400
13 -28.400IDP04425 gene: carB; carbamoyl phosphate synthase large subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA4025 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  547IVTDRKSVVVLGSGYATVHSVWAIKEAGYEAIIINNNPETVSTDISDKLYF-EPLTIEDVMHIIDLEKPEGVIVQFGGTAINLAAKLEEHGVKILTSLEDLDRAEDRDKFEAAL-TKLGIPQPVGKTATTVEQAVAIAEEIGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVH--ADHPVLIDRYMV-GKEIEVDAISDGENVFIPGIMEHIERAGV-SIGVYPPQLSEKLKEQIIEHTIALGKGLNIVGLLNIQFVVFKDQVYVIEVNPRASRTVPFLSKITGVPMANVATKVILGQDLVEQGYGTGYHPEEKEVYVKAPVFSFAKLRSVDTTLGPEM-----------KSTGEVMGKDLTLEKALYKGLVASG...... 929
14 -27.200IDP90274 carbamoyl phosphate synthetase II [Toxoplasma gondii ME49] TGME49_015260 [Toxoplasma gondii ME49]  ali follow..  16 1123.APGKQCFVVLGCGCYAVSCVRTLRSLGHHAIVVNCNPETVSTDVSDRLYFEDLS-LETVLNIWDIEAPAGVIISVGQTPNTLCSALEKQGVRIVTSVAAIDCCEDRHKFSRLC-DELNIDQPRWKEFTDLRTAKAFCQEVGYPVLVRPSYVLSGAAMRVVTDDEQLDAFLKIAAVVSG--ESPVVISKFVENAKEVEFDSVACRGEIVNFAISEHVENAGT-ATLILPGQLYVETIRRVKKISQKLARALQVSGPFNIQFICKQNDVKVIECNLRASRTFPFISKAFNVNLIDLATKVMIGAPVTPLPIHLMDLSFVCVKVPVFSFARLRGCDPVLGVE---------------RSTGEVACFGASKHEAFLKALISAG...... 1502
15 -23.100IDP90640 gene: ddl; D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0798c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  16  2......KFAILFGGN-AVVLKKVINQNLEFIFC-SKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIH--DGKIAALFEFYSIKIGPRLEASVLSFNKELTKLYA-KSVGVKTLDYTILRKNQNSK---EKLSFPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEF----DNDLVVEEFKNNIKEYNLAGCMINDEFVFFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFILDNEIYLNEINPNP............................................................................................................. 301
16 -22.700IDP05293 gene: ddl; D-alanine--D-alanine ligase [Clostridium difficile 630] CD1408 [Peptoclostridium difficile 630]  ali follow..  14  1.....MKIAVIMGGNSGKEIYNNLDKNKYEVVKVIIDDKPEDIDFAILALHGKFGEDGCIQSILETMDIPYS----------------------GCGPLCSGMCMDKNITKKML-RDSNLPTAPWVLVKSVDEIYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVEEAVRKGLEV----DEFVMIEKYIP--GEYTSFIL----NGEVFPTISIKSDSGFFDYEEEVVYLDEELQKRVNEISETCWKIFNCKAYVRVDMIISEGIPYVLELNTLP----------TQTSLIPRSAAAR-GIKYSEL.............................................................................. 289
17 -22.400IDP01207 D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) BA_2610 [Bacillus anthracis str. Ames]  ali follow..  14  2......RIGVIMGGV-GNEMIANLDKNKYEIVPITLNEKAKDIDFALLALHGKYGEDGTVQGTLESLGIPYS----------------------GSNMLSSGICMDKNISKKIL-RYEGIETPDWIELTKMEDLNDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW----DSEVVIEKYIK--EEITCSIFDGKHAAEFFDYNAKYDDAS---TIEEVIELPAELKERVNKASLACYKALKCSVYARVDMMVKDGIPYVMEVNTLP----------TQASLLPKSADAA-GIHYSKL.............................................................................. 287
18 -22.100IDP91050 gene: vanB; D-Ala:D-Lac ligase [Enterococcus faecalis] EFE0001 [Enterococcus faecalis]  ali follow..  16  1..MNKIKVAIIFGGC-AIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLPAIFREYETRRIDVAFPVLH--DGAIQGLFELSGIPVGCDIQSSAACMDKSLAYILT-KNAGIAVPEFQMIEKGDK--PEARTLTYPVFVKPARSGSSFGVTKVNSTEELNAAIEAAGQY----DGKILIEQAIS-GCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHIVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQDGGIVLNEVNTLP----------TSYSRYPRMAAAA-GITLPAL.............................................................................. 331
19 -21.800IDP02239 gene: purD; phosphoribosylamine--glycine ligase [Bacillus anthracis str. `Ames Ancestor`] GBAA0299 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  1.....MNVLVIGRGGREHALAWKFAQ-SEKVEKVYVAPGNEGMRDVATPIDIDENDFDALVLFAKENHVELTFVGPEILMNGIVDRFKEEGLRVFPNKAAAVIEGSKAFTKELM-KKYNIPTAAYETFTDYEEAVQYIEKVGAPIVIKADGLAAGKGVTVAMTLEEALQAAKEMLQDVKFGEAKVVIEEFLD--QEFSLMAFVNGTTVHPMVIAQDHKRGGMGAYSPVPQISESAVQEAIETVLYPTAKAMSFTGILYAGLILTNDGPKVIEFNARFGDPETEVVLPRLENDLVDVCNAVLDESELTLQWSDEAVIGVVLAAKGYPEAYKKGDIIKGLDALQDVIVFGDFVTNGGRVLF-VACKANSLQEAKDKVYKEIGKIES.. 402
20 -21.700IDP91878 gene: vanB; VanA protein [Enterococcus faecium] pVEF1_014 [Enterococcus faecium]  ali follow..  16  1..MNRIKVAILFGGC-AIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCYSAVHEYEINHVDVAFSALH--DGSIQGLFELSGIPVGCDIQSSAICMDKSLTYIVA-KNAGIATPAFWVINKDDR--PVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQY----DSKILIEQAVS-GCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHTVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFLQNGRIVLNEVNTLP----------TSYSRYPRMMAAA-GIALPEL.............................................................................. 332
21 -21.600IDP91788 gene: vanD; D-Ala:D-Lac ligase VanD [Enterococcus faecium] ACM47287 [Enterococcus faecium]  ali follow..  14  1..MFKIKVAVLFGGC-AMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWEQYAGDPVVTGYEIQPVDVVFPMIH--DGSIQGLLELSGIPVGCDIQSSVICMDKALAYTVV-KNAGIAVPGFRILQEGDR--LETEDLVYPVFVKPARSGSSFGVNKVCKAEELQAAIREARKY----DSKILIEEAVT-GSEVGCAILGNENDLMAGEVDQIELRHGFFKIHRVPAALPDEVRERIRKTAMKIYRILGCRGLARIDLFLRDGCIVLNEVNTMP----------TSYSRYPRMMTAA-GFTLSEI.............................................................................. 332
22 -21.500IDP00575 gene: ddl; D-alanine--D-alanine ligase YPO0557 [Yersinia pestis CO92]  ali follow..  18  3.....EKVAVLLGGT-GQAVLAGLKEAGIDAYGVDTKDFEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYT----------------------GSGVMASALTMDKLRTKLVW-QALGLPISPYVALNRQQELVACVAKLGLPLIVKPSHEGSSVGMSKVDHASELQKALVEAFQH----DSDVLIEKWLS--PEFTVAIL----GDEVLPSIRIQPPGVFYDYDFCPSGLSDESEQQLAALALQAYHALDCSGWGRVDVMQDDGHFYLLEVNTSP----------TSHSLVPMAARQY-GLSFSQL.............................................................................. 297
23 -21.400IDP02693 gene: ddlB; D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis SCHU S4] FTT0185 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  16  1..MKNEKIVVLYGGD-GKAVLDSLISQGYDAVGVDASGKELVAKLLELALHGEDGENGRVSALLEMLEIKHT----------------------SSSMKSSVITMDKMISKEIL-MHHRMPTPMAKFLTDKLVAE---DEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY-----GEVMIEQWVT--KEITVAIV----NDEVYSSVWIEPQNEFYDYEHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDRGNFYIMEINSSP----------TDNSLSPKSAAAE-GVDFDSF.............................................................................. 287
24 -21.300IDP01488 gene: ddl; D-alanyl-alanine synthetase A VCA0572 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  1..MTKTTILLLCGGEISLVSANYILTPEFHVIRVEMKKEG----SEQGALVYLDTNSATLNSDKASYPIDFVVPCIH--TGDIQSMLELAGIPLGCGPEASANSFNKITSKLWY-DALDIPNTPYLFLTQNTDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAAFGF----SEQVLVEQAVK-PRELEVSAYEMNGKLYFYSYEEKYSANSHARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTEGQIYLNEVNTFP----------TPISMFPKMLEHN-GHRFSEF.............................................................................. 321
25 -21.300IDP04230 gene: purD; phosphoribosylamine--glycine ligase [Clostridium perfringens ATCC 13124] CPF_0678 [Clostridium perfringens ATCC 13124]  ali follow..  13  1.....MKILLVGSGGREHALAWKLGK-SSKVEKIYVAPGNGGTANENKCENIELTKICDLLKFAKNNNIDLTIVGPEELINGIVDAFKGEGLKIFPDKAGAMLEGSKSFSKDFM-KKYGVKTADYEVFYDYEEAKIYLENCKYPRVIKADGLAAGKGVVICENKNQAIETLDLFMIDDVFNGKKIVVEEFLQ--IEASILSVTDGKVILPFLSAKDHKQGGMGVISPNKYVTEEVLADFYENILEKTLIGIRFKGVIFFGIMITEEGAKLLEYNVRMGDPETQSVLSLMESDLVDIILNALDEKLNETTIKGYCVNVVLSSKGYPEAYEKGYEISIDESLKGEYFIAGAKKVTSGGRVLSVVGKGKTLEEAKENAYKNIEKVNF.. 403
26 -21.100IDP91787 gene: vanC; D-alanine-D-alanine ligase-related protein [Enterococcus gallinarum] AAA24786 [Enterococcus gallinarum]  ali follow..  17  2.....KKIAVLFGGN-AASVIQAIDPLKYEVMTIGIAPTNDTWLEDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLH--DGCIQGLLELMNLPVGCHVAASALCMNKWLLHQLA-DTMGIASAPTLLLSRYETIDRFIQDHGFPIFIKPNEAGSSKGITKVTDKTALQSALTTAFAY----GSTVLIQKAIA-GIEIGCGILGNEQVDGFFDFEEKYQLIS--ATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTQGAIYLNEINTMP----------TGHSRYPAMMAEV-GLSYEIL.............................................................................. 330
27 -20.800IDP00919 gene: ddl; D-alanyl-alanine synthetase A STM0380 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  1..MAKLRVGIVFGGK-AKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPAHIANGQPLPTVDVIFPIVH--DGSLQGMLRVANLPVGSDVLSSAACMDKDVAKRLL-RDAGLNIAPFITLTRTNSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF----DHKVVVEQGIK-GREIECAVLGNDNPQASFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTDNEVVINEIN---------TLPGFTNISMYPKLWQASGLGYTDL.............................................................................. 342
28 -20.800IDP06289 gene: ddl; D-alanyl-alanine synthetase A [Streptococcus pneumoniae TIGR4] NP_346110 [Streptococcus pneumoniae TIGR4]  ali follow..  16  3.....QTIILLYGGR-AESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDDKKVAPSAIYEEGAVVFPVLH--DGSVQGFLEVLKMPVGCNILSSSLAMDKITTKRVL-ESAGIAQVPYVAIVEGDDIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRY----DSRVLVEQGVN--REIEVGLLGNYDVKSFYDYDAKYIDNN--ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTKGEIFLNELNTMP----------TQWSMYPLLWDNM-GISYPKL.............................................................................. 327
29 -20.700IDP91879 gene: vanG; D-Ala:D-Ser ligase [Enterococcus faecalis] AAQ16273 [Enterococcus faecalis]  ali follow..  17  1..MQNKKIAVIFGGN-ASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTLEIASDKYRIIKVDLVFPVLH--DGTLQGIFELAGIPVGCDTLSSALCMDKDRAHKLV-SLAGISVPKSVTFKRFNAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEH----DTEVIVEETIN-GFEVGCAVLGIDESSGFFDYTEKYTLKS--SKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTSGEIVFNEVNTIP----------TSHSRYPNMMKGI-GLSFSQM.............................................................................. 339
30 -20.600IDP91799 gene: vanE; VanE [Enterococcus faecalis] AAL27442 [Enterococcus faecalis]  ali follow..  16  2.....KTVAIIFGGV-AVAIIKNMESIDYNVMKIGITEEGFLDESCEEIVVDFAKKSFVLKNSKKIIKPDILFPVLH--NGAMQGVFELLDIPVGCGIGAAAISMNKIMLHQFA-EAIGVKSTPSMIIEKGQKVDAFAKIHGFPLYIKPNEAGSSKGISKVERKSDLYKAIDEASKY----DSRILIQKEVK-GVEIGCGILGNEQVDGFFDYEEKYNLVT--AEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDFFLTDGEILLNEINTMP----------TEHSRFPMMMNEI-GMDYKEI.............................................................................. 332
31 -20.600IDP04490 gene: purD; phosphoribosylamine--glycine ligase [Yersinia pestis CO92] YPO3729 [Yersinia pestis CO92]  ali follow..  15  1.....MNILIIGNGGREHALGWKAAQ--ADKIYVAPGNAGTALEPTLENVDIAATDIAGLLAFAQSHDIGLTIVGPEALVIGVVDAFRAAGLAIFPTQAAAQLEGSKAFTKDFL-ARHNIPSAEYQNFTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDARIVVEEFLD--EEASFIVMVDGENVLPMATSQDHKRGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAYTGFLYAGLMISDGQPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGTQGKLNEKTSLGVVLAAGGYPADYRQGDVIHGLPQQEVKDGKVFHAGTKLNVTNGGRVLCVTALGETVAQAQQYAYQLAEGIQW.. 410
32 -20.400IDP90620 phosphoribosylamine--glycine ligase [Vibrio cholerae O1 biovar eltor str. N16961] VC0275 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  17  1.....MQVLIIGSGGREHALAWKAQNPQVDTIYVAPGNAGTALEHKVQNVNIGITDIPALVAFAQDKAIELTIVGPEALVIGVVDAFRAAGLPIFPTQGAAQLEGSKAFTKDFL-ARHNIPTAAYANFTEIEPALAYVREKGAPIVVKADGLAAGKGVIVAMTLQEAEDAIQDMLAGNAFGSARVVVEEFLD--EEASFIVMVDGENVLPMATSQDHKRGGMGAYSPAPVVTQDVHDRVMREVIDPTVRGMAYTGFLYAGLMIDTGAPKVIEYNCRFGDPETQPIMMRLQSDLVELCQAAIAGKLDQVESKRASIGVVLAAGGPGDYAKGEVISGLPTQESAGQKVFDQVVTNGGRVLC-ATALGNTVLEAQQRAYQLADQIHW.. 409
33 -20.200IDP04357 gene: purCD; fusion protein PurC/PurD [Francisella tularensis subsp. tularensis SCHU S4] FTT0894 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  15  323NMEKPVNILLVGSGSREHAIAEAVKRSSIKLFCISTAINPAIDKITQGYQIADICNCDEVLEYAKSQSIDIAIIGPEALEAGLADALKTAAIGVVPTKKLAQLETSKGFTRDLI-RDYDIGANPFRKFNSMDGVEETLKKYQNQFVIKADGLCGGKGVLVWGDHLHSLDEAIRHCQSLVDAGKEFVIEEKLV--QEFSLISFADGKNFIHMPAVQDHKR------TYSDANLSAADIERAKQINEKVVRALPYQGILYGGFMATKDDTKVIEYNARFGDPEAMNLLTLLETDFVEIAQAITQGKLDTVKAKNQASVCKYLVPLGYPNQSVKNFEIDISQCPDNVELFGKLIGTGSRAIA-VLGLGDTIAEAEQKAENAVKNI.... 735
34 -20.100IDP90869 gene: purD; phosphoribosylamine--glycine ligase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1250 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  17  1.....MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGT---NLNLKDPVVLATYAKEKGFDLCIVGSESLAEGVVDIFKQQGLAIFPSKAAAMLETSKSFMKSFL-KKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEAIEETAKMLSGESFGDALVVIEEFLD--YELSIFAVCDGNDFVLLPAAQDHKKGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKFCGVLFIGAMIVGNKPYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRLRHSKIKIKKEFAVGVVCASENYPYKSSPKSEITVNNIPENSHISGKLMADGGRVLV-CVGTGKSIEEAQKNAYKLCDNVNF.. 401
35 -19.500IDP02225 D-alanine--D-alanine ligase [Coxiella burnetii RSA 493] CBU_1338 [Coxiella burnetii RSA 493]  ali follow..  12  2..AEKLHISVLCGGQ-AKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPWQSLNGDGRRYSADCVFPMVH--DGALQGLLELLNLPVGANVQSSAVCMEKDLTKTVL-RAGGIPVVDWHTLSPRDYQRLLDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRY----DDRLMVEPRIR-GREIECAVLGNGAPKASYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTNNKVLVNEIN---------TIPGFTNISMYPKMWEASGLPCPNL.............................................................................. 343
36 -10.900IDP04310 D-alanine--D-alanine ligase, C-terminus [Bacillus anthracis str. Sterne] BAS0231 [Bacillus anthracis str. Sterne]  ali follow..  26  1.......................................................................................................................................................................................................................................MTEEESNVIKRDAIVAFQSLDGAGLTRADFFLTDGEVYINEVNTMP----------TPFSMFPLLWQHT-GLPYPEL.............................................................................. 69
37 -10.800IDP02255 gene: cphA; cyanophycin synthetase [Francisella tularensis subsp. tularensis SCHU S4] FTT1130c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  18  172.............GPSTASLVEAAKKRDIPYIRLNDQ--------------------------------SLVQFGYGKYQQRIRATITGKTTSI-----AVDLSCDKEQTNTIL-SSLGLPVPKQRMVTTEEGAVRAAKILGFPLVVKPLDGNHGRGISILKTIEEIKEAFVEANKVS----RYVLLEQYVI--FDHRMLVVDGKLIAVAKRVPGHVVGDGKHTIAELVEIVNQDPRRGIGELDYQARTLLRAAG-YDENTILKDGEVFYLRSTANLSTGGTAIDVTDIVHDMAERAIKAIGLDVGGVDFLIDDIS...................................................................... 443

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.