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Query: IDP04464 gene: hutI; imidazolonepropionase [Yersinia pestis CO92] YPO1972 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVSVTHCDSLWFGADIITMRGGNYQLIPQGAIAVTGDKIVWIGPHAELPPIHAARQVVYEGGLITPGLIDCHTHLVFGDDRSNEFEQRLNGVSYAEIAANGGGIISTVRATRQASEQQLLEQALFRLKPLLAEGVTTIEIKSGYGLNLESEIKMLRVARRLGELLPIDVKTTCLAAHALPPEFIGQPDDYIDVVCNSIIPQVAVENLADAVDAFCEHLAFSPAQVERVFLAAQKAGLPVKLHAEQLSALRGATLAAKFHAISADHLEYATESDVQAMANAGTVAVLLPGAYYLLRETQCPPIDLFRQYKVPMALASDANPGTSPVLSLRLMLNMACTLFRMTPEEALAGVTCHAAQALGVQQTQGTLETGKLANWVHWPLSHPAELAYWLGGQLPATVVFRGEVRPLast
1 -119.000IDP04464 gene: hutI; imidazolonepropionase [Yersinia pestis CO92] YPO1972 [Yersinia pestis CO92]  ali  100  1MVSVTHCDSLWFGADIITMRGGNYQLIPQGAIAVTGDKIVWIGPHAELPPIHAARQVVYEGGLITPGLIDCHTHLVFGDDRSNEFEQRLNGVSYAEIAANGGGIISTVRATRQASEQQLLEQALFRLKPLLAEGVTTIEIKSGYGLNLESEIKMLRVARRLGELLPIDVKTTCLAAHALPPEFIGQPDDYIDVVCNSIIPQVAVENLADAVDAFCEHLAFSPAQVERVFLAAQKAGLPVKLHAEQLSALRGATLAAKFHAISADHLEYATESDVQAMANAGTVAVLLPGAYYLLRETQCPPIDLFRQYKVPMALASDANPGTSPVLSLRLMLNMACTLFRMTPEEALAGVTCHAAQALGVQQTQGTLETGKLANWVHWPLSHPAELAYWLGGQLPATVVFRGEVRP 406
2 -60.300IDP00467 N-formimino-L-glutamate deiminase YPO1974 [Yersinia pestis CO92]  ali follow..  16  1................MPVYFTKRAFLPDGWAADVQIAVDELGDIQRISTGSSSSGCQVLSGPVLPGMPNLHSHAFQRMMSGLAEDPQDSFWTWRDLM----------RLVQQLTPEQVGVIARQLYIEMLKGGYTQVAEFHYLTAQLSQAAQDAGIGMTLLPVLYSYAGFGAQPAQQGQSRFIQDTESYLRQQ-QVIRRQLANQPLQNQGLCFHSLRAVELSQMQQILHVS-DKQLPVHIHIAEQCGQRPVAWLYGHLPVCLVHATHLDTSELVMLANSQAVAGLCPTTEANLGDGIF-PGVDYIHHQGRWGIGSD----SHVSLDVVEELRWLEYGQRLTCERQPAVADLLYSQALACGRQISQLAVGYRADWLVLDGDDPNRWLFAGGKSQIRDVYVAGKA.. 428
3 -37.800IDP01088 gene: iadA; isoaspartyl dipeptidase STM4512 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  1MPDLSAAETLLQGAHLFAPED-----RGICDVLLANGKIIAVGAGIPGDIVPDCTVINLSGRMLCPGFIDQHVHLIGGGG----------------------------------EAGPTTRTPEVSLSRLTEAGITTVVGLLGTDSVSRHPASLLAKTRALNEEGITAWM--LTGAYHVPSPTITGSVEKDVALIDRVIGVKCAVSDHRSAAPSGNQLASMAAESRVGGLLGGKPGVSVFHMGSSKKGLQPLYDILENSDVPIGKLLSLFEQALAFALKGGVIDITTSIPDPVAPAEGIARAVKAGVPLSRVTLSSDGNGGVAGFESLLETLQTLVNHYGFSLANALRPLTTSVAAFLSLDGK-GEIRPGNDADLLVFSAD------------RIEQVYARGKR.. 374
4 -25.600IDP00351 gene: adeC; hypothetical protein lmo1742 lmo1742 [Listeria monocytogenes EGD-e]  ali follow..  15  19....AKADLVIKNGRIINVFSGE---IMDGDIAIKNGYIAGIGSFPD-----AEKIIDAAGAFIAPGFIDAHVHV-----------------------------------------ESAMVTPAEFARVLLPNGVTTIVT----PHEIANVAGEKGIEFMLEDAKGAPLDMFVMLPSSVPATEGEHNGETL-----------------------------HAEKLHPLYRHEKVIGLAEVMDKGSDDILRKIIDAKKEGGRIDGHGAGLTSADLNNYLAVGIRTDHESTTAKEATDRLRAGMFVMLREG-RFCFCTDDLINDLITEGSINYNIKLAIKNGIDPITAIQMATINAANCHNLPY-LGAVAAGYQADIVFLT---------DIETVEISKVLKNGEV.. 351
5 -24.900IDP00657 gene: nagA; N-acetylglucosamine-6-phosphate deacetylase SACOL0761 [Staphylococcus aureus subsp. aureus COL]  ali follow..  14  3.......ELIIYNGKVYT----EDGKIDNGYIHVKDGQIVAIGEVDDKAAIDNDQVIDAKGHHVLPGFIDIHIHGGYGQDAMDGSYDGLKYLSENLLSEGTTSYLATTMTQSTDKIDNALTNIAKYEAEQDVHNAAEIVGIHLEGPFISENKVGAQHPQYVVRPFIDKIKHFQETANGLIK--------IMTFAPEVEGAKEALETYKDDIIFSIGHTVATYEEAVEAVERGAKHNAATPFQHREPGVFGAAWLNDALHTEMIVDGTHSHPASVAILITDAMRAKGMPEGEYDLGG------QKVTVQSQQARLANGALAGS--ILKMNHGLRNLISFTGDTLDHLWRVTSLNQAIALGIDDRKGSIKVNKDADLVILDDD------------NVKSTIKQGKV.. 389
6 -24.800IDP02818 gene: pyrC; dihydroorotase [Bacillus anthracis str. `Ames Ancestor`] GBAA4027 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  1......MNYLFKNGRYMNEEGK----IVATDLLVQDGKIAKVAENITAD---NAEVIDVNGKLIAPGLVDVHVHLREPGGEHKE------TIETGTLAAAKGGFTTICADCREHMEDLQNRIKEKAHVNVLPYGAIT-VRQAGSEMTDFETLKELGAFAFTDDGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEGKFSEKHGLNGIPSVCESVHIARDILLAEAADCHYHVHVSTKGSVRVIRDAKRAGI-VTPHHLVLCEDDIP---SADPNFKMNPPLR---GKEDHEALIEGLLDGTIDMIATDHAPHTAEEKAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGLEA--GRLKEGRTADITIIDLEQEEEIDPTTFLSKPVMTIVGGKI.. 419
7 -24.600IDP04112 gene: nagA; putative N-acetylglucosamine-6-phosphate deacetylase [Yersinia pestis CO92] YPO2626 [Yersinia pestis CO92]  ali follow..  14  3.........ALTHGRIYT----SHEVLDNHAVVVADGLIERICPVDELPA--GIEICDLGGAILAPGFIDVQLN--------------------------GCGGVQFNDSLEAISAETLDIMQR----ANEKSGCTSFLPTLITCSDEFMKHGVDVMRSYLQKNQHQALGLHLEGPYISPLKKGTHNPAFIRKPSAEMIDYLCANADVITKLTLAPEM-----VDPKYIQQLTEAGILVSAHSNATYQQ--ARQGFTAGIRFATHL-----NAMPYISGREPGLIGAIFDTPEVYTGVIADGLHVDWANIRNALVTDATAPSGSALTMIEAVQNSVEHVGIALDEALRMATLYAARAIGVDKQLGSIEVGKVANLTAFTRD------------KITKTIVNGNE.. 378
8 -24.300IDP00795 gene: pyrC; dihydroorotase SACOL1213 [Staphylococcus aureus subsp. aureus COL]  ali follow..  15  2........KLIKNGKVLQNGEL-----QQADILIDGKVIKQIAP--AIEPSNGVDIIDAKGHFVSPGFVDVHVHLREPGGEYKETAAARGGFTTVCPMPNTRPVPDSVEHFEALQKTRQLGKELVDFPALVKEGAFAFTDDGVGVQTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDLAEAAGCHYHVCHVSTKESVRVIRDAKRAGIHVTAEV-------------------TPHHLLLTEDDIP---GNNAIYKMNPPLR---STEDREALLEGLLDGTIDCIATDHAPHARDEKAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNLEY--GTLKENGYADLTIIDLDSEQEIKGEDFLSKPILTMVEGEV.. 418
9 -24.100IDP04718 putative acetylglucosamine-6-phosphate deacetylase [Yersinia pestis CO92] YPO0838 [Yersinia pestis CO92]  ali follow..  15  1......MRTAYLADRTFT----PQGIETGVAVIVEQGEIVAVTRELP----ADAEIVHLTGKTLIPGLIDIHIHGRQGA------------------------------DVMDASAEALRTIAR----ALPQTGVVAWTTVSAPIQDIFAALAQVRDFIADPDNARDTRTATLLGSFQELEQLRHSAGNTLLRAAIAPESPEALAAIRWLVNHGIKTSVAHTAANFEQVTAAYQQGADCGVHLHREPGCCGAVLYHDMLAELIADGIHVHPVMMNLLITDCMRAGGLGEGRYLLGA------QHITVRQGEARTDDGSLAGS--TCSLDQALRNMIQHAQVPEWEAVQMASAVPAAYLGLASTLGSIQMGAQASMVVMESD------------TVAATLIKGEW.. 382
10 -24.000IDP01334 gene: nagA; N-acetylglucosamine-6-phosphate deacetylase VC0994 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  2........YALTNCKIYT----GNDVLVKHAVIINGDKIEAVCPIESLPS--EMNVVDLNGANLSPGFIDLQLNGCGGVMFNDEITAETIDTMHKANLKSG---CTSFLPTLITSSDENMRQAIAAAREYQAKYPNQSLGLHLEGPYLNVMKKGIHSVDFIRPSDDTMIDTICANSDVI---------AKVTLAPENNKPEHIEKLVKAGIVVSIGHTNATYSEARKSFESGITFNAMTPMVGREPGVVGAIYDTPEVYAGIIADGFHVDYANIRILVTDATAPAGAEMDYFIFVG------KKVYYRDGKCVDENGTLGGS--ALTMIEAVQNTVEHVGIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFDRD------------NVKATVVNGQY.. 375
11 -22.800IDP02603 gene: nagA; N-acetylglucosamine-6-phosphate deacetylase [Bacillus anthracis str. `Ames Ancestor`] GBAA4274 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  3.......TQVVINAKIYTGQE-----VVENGFIRYAETIKEIGLMAQYVSQENETVLDAAGKIVIPGMIDVHIHGGYDIDAMDANSDGLVTLGKEML---KEGVTTYFPTTMTQAPEAI-EAALHAAKEAKEKGAHFE------YIHLEGPYVSKKRAGAQPLEHIVPANIEQF------KQWQEASGNLIKLV--TYAPEE--EGALEFEQYLAETGVGTMGHTDAIDAQLKNRNITHATHLREPGVVGHVLLNPDVMVEVITDGIHIHPDMVKLVITDAMRAKGLEDGLYELGG------QPVHVKDGSARLEDGTLAGS--ILKMDQAFRNVIEFTGCSIEDAVLMTSVNQAEEFGLNNK-GALAVGKDADFVVMNED------------HVYDTVRLGIH.. 375
12 -15.100IDP04461 gene: pyrC; dihydroorotase [Yersinia pestis CO92] YPO1587 [Yersinia pestis CO92]  ali follow..  1.......................................................MTAQPQTLKIRRPDDWHIH------------LRDDEMLSTVLPYTSEVFARAIVMPNLAQPITTVASAIAYRERILAAVPAGHKFTPLMTCYLTNSLDAKELTTGFEQGVFTAAKLYPANATTNSTHGVSDIPAIYPLFEQMQKIGMPLLIHGEVTDAAVDIFDREARFIDQILEPIRQKFPELKIVFEHITTKDAADYVLALGATVTPQHLMFNRNHM-LVGGIRPHLFCLP---LKRSTHQQALRAAVASGSDRFFLGTDSAPHAKHNAPAALPAYASVFEELNALQHLEAFCALNGPRFYGLPV----------NDDVVELVRTPFLQ-------PEEIPLGNESVIP 335
13 -15.000IDP00873 gene: pyrC; dihydroorotase STM1163 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  1.......................................................MTAPSQVLKIRRPDDWHVH------------LRDGDMLKTVVPYTSEIYGRAIVMPNLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCYLTDSLDADELERGFHEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKLGIPLLVHGEVTHADVDIFDREARFIDTVMEPLRQRLTALKVVFEHITTKDAAQYVRDLAATITPQHLMFNRNDML--GGIRPHLYCLP---LKRNIHQQALRELVASGFTRAFLGTDSAPHSRHNAPSALGSYAAVFEEMNALAHFEAFCSLNGPQFYGL--------PMNTGWVELVRDE------------PGNIALADDSLVP 335
14 -14.000IDP92021 adenosine/AMP deaminase domain containing protein [Toxoplasma gondii ME49] TGME49_005720 [Toxoplasma gondii ME49]  ali follow..  11  16................................................................LP--IELHAHLFGSIRVPVLEEIRQRAAEEHKQTTESCYGANADEAAANVRKDDIVYALRRVLEDFSQDNVVYLELRTTLKTIPEEGIDPDNYVALLVEELKSAEKQYPMIVRLILSLNRSRLTSEVETREETVKILDLVAKYPEWIVGVILPALEVLEKEVMNPSGAHHGKLKVTVHTSEVEGSEKEKAVLKLAPHRIGHGCYLAVDQREFLLKEKICVEICPSSNMCTLN----PFSYYYGKKVAVCICTDDIGLFDT--SLSKELHVLSQAYNLSLSDVMDLQRSALAAAFCRDEDKAKI....................................... 357
15 -13.800IDP92013 adenosine monophosphate deaminase, putative [Toxoplasma gondii ME49] TGME49_034280 [Toxoplasma gondii ME49]  ali follow..  11  368............................................................................................................................................................................................................................NIRALNEFMVARGLRALAFRPHCGEAGSVSHLATM--LLADAINHGIMLKKCPQYLFYLAQIGLAVSPLSNNALFMDIAKPLCSFFKIGLNVSISTDDPL-HFTDEPLLEEYSVAAHTWKLSPVDLCELA-RNSVLQSGFEAELGPKYKLGGRCMRQTNVSNIR-LQYR................. 545
16 -13.500IDP90750 gene: pyrC; dihydroorotase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0259 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  10  1..............................................................MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLCNLEDLKAYKMRILKACKDENFTKLYPAGITTNSNGGVSSFDIEYLKPTLEAMSDLNIPLLV---------HGETNDFVMDRESNFAKIYEKLAKHFPRLKIV--------------------------------EHITTKTLCELLKDYENLYATITLHHLIITLDDV-IGGKMNPHLFCKP---AKRYEDKEALCELAFSGYEKVMFGSDSAPHPKDTAPVILPVLAELFKQNSSEENLQKFLSDNTCKIYDLKFK---------EDKILTLEEKEWQV-------PNVYEDKYNQVVP 322
17 -13.200IDP90537 RecName: Full=Dihydroorotase; Short=DHOase Q9KL24 [Vibrio cholerae]  ali follow..  10  2............................................................TTLTITRPDDWHVHL--------------DGDVLADTVRDISRYNGRALIMPNTVPPVTTTEMALAYRERIMAAQPQAHFEPLMALYLTDNTSPEEIRKAKASGKVVAAKLYPAGATTNSDSGVTSAKNIYPVLQAMQEVGMLLLVHGEVTTHEVDIFDREKTFLDTVLAPIVNDFPQLKIVLEHITTADAVTFVQQAGATITAHHLLFNRNHM-LVGGIRPHFYCLP---LKRATHQHALVAAATSGSKKFFLGTDSAPAGSYTAHAALELYAEVFEKEGKLENLEAFASFNGPDFYGLPRNQETVTLTKQAWPV---FGSDIVVPIRAGEN------IEWTVK. 342
18 -13.100IDP00965 gene: add; adenosine deaminase STM1463 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  6................................................................LP--TDIHRHLILDLGRQFNIALPAQTLETLIPHVQVTSTEPDLVSFLTKSLDACRRVAFENIEDAARNGLHYVELRFSGYMAMAHQLPIAGVVEAVIDGVRDGCNTFGVEARLIGIMSRTFGEAACLQELDALLAH---RENITALDLAGDELGFPGSLFLSHFNRARDAGWHITVHAGEAAGPESIQAIRELGAERIGHGVKAVEDRMDFLAQQRIGIESCLTSNIQTST----PLKTFLEHGVLASLNTDDPAVQGV--DIIHEYHVAAPAAGLSREQ-IRQAQINGLEIAFLSDS........................................... 321
19 -12.600IDP04388 adenosine deaminase [Vibrio cholerae O1 biovar eltor str. N16961] VC2751 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  6................................................................LP--TDLHRHLILELGQKFGVKLPANTLQTLTPYVQIVEAEPSLVAFLSKDLDACRRVAYENVEDALNARIDYAELRFSYYMAMKHSLPVTGVVEAVVDGVRAGVRDFGIQANLIGIMSRTFGTDACQQELDAILSQ---KNHIVAVDLAGDELGQPGDRFIQHFKQVRDAGLHVTVHAGEAAGPESMQAIRDLGATRIGHGVKAIHDPMDYLAQHRIGIESCLTSNLQTST----PLKRFLEHGILACINTDDPAVEGI--ELPYEYEVAAPQAGLSQEQ-IRQAQLNGLELAFLSDS........................................... 321
20 -11.600IDP92118 adenosine/AMP deaminase domain containing protein [Toxoplasma gondii ME49] TGME49_015480 [Toxoplasma gondii ME49]  ali follow..  12  71................................................................IP--VELHVHMEGTLEATLAKEIAFNDDENGIAFGDLNSFLAAYFHRESVHREDIYNVVLRYFEKSAAQNVRHIELLFD-FQSPFRQTPPRDALQGMYDACLEAEKRWGVTSRRILCFIRSFPLKKHLECVEMVTPY---MSLFDGFGLAASELGHENYKFRKVFDLVKQKGFPCVAHAGEEGPAQNVDALLHNHAARIDHGTSAVEDPLKHLVANQVPLTVCPLSNVCLGVCRNLEEHPLLRCMPKCSLESETPNGVS--HEVFQSQRDRLRCEQLDKLKAADKDP....................................................... 369

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.