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Query: IDP04465 hypothetical protein [Yersinia pestis CO92] YPO1994 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLLNNITPVNKSLTLQDLLGILSHSSAISNVANGIYVESEILEVGSWLSAYAANKDEIFSQIITELENPYQFQLENDIQAPSFILYSNERITIRLVMWLPLQGKLDRTPYSYEEAHDHNFDFWTVNFFGGGYRTRLYDYDYDKVSGVNNEVVELNCYGDKILSPNTVMFYFRSKDVHTQYPPDELSVSLNLIVRPIKSKHQYEFQIDSDALEGKIEARIKKGRYERYAFQNVLYNGLLSLENEKSRQLVHKVSLCNHREEIRLIAYEALLKHAQKKGNVSDIKSISEQAFKDQSLYIKNKISHSIGSMPCMSPKPRLast
1 -112.000IDP04465 hypothetical protein [Yersinia pestis CO92] YPO1994 [Yersinia pestis CO92]  ali  100  1MLLNNITPVNKSLTLQDLLGILSHSSAISNVANGIYVESEILEVGSWLSAYAANKDEIFSQIITELENPYQFQLENDIQAPSFILYSNERITIRLVMWLPLQGKLDRTPYSYEEAHDHNFDFWTVNFFGGGYRTRLYDYDYDKVSGVNNEVVELNCYGDKILSPNTVMFYFRSKDVHTQYPPDELSVSLNLIVRPIKSKHQYEFQIDSDALEGKIEARIKKGRYERYAFQNVLYNGLLSLENEKSRQLVHKVSLCNHREEIRLIAYEALLKHAQKKGNVSDIKSISEQAFKDQSLYIKNKISHSIGSMPCMSPKPR 316
2 -16.500IDP90389 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_384 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  9  77.....................................................................................................................................................EDLAASLLQKNIRHSSLTVRVITILAVGMARDYRLVPIVLQALSDDSDTVREIAVQVAVMYGSSCLLRAVGDLNDSSIQVRITAYRAAAVLEIQDLVPHLRVVVLAADHPEVQVATLQIILRGGRVFRSSSIMESVQKLACNSLSARVQMQAAAILYLEGDPFGEDK 301
3 -16.400IDP90382 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_350 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  9  3.........................................................LSRLAFISFLSFTLSASCDFPSSVSQRILFSCRKSVPQALEAYLEASATYQQHDFSVLRVIAESYLQQSFLSEDTYIRKSAI---IGAGLSGSSEALELLSEAIETQDLYEQLLILNAATSQLSKTSDKLLFKGLTASHPVRLEAAYRLACMKNSKVSDYLYSFIYKLPEEIQNLAATIFLQLETEEADAYIHHL-LSSPNNLTRNYVAYLIGEYKQKRFLP-----TLRSLLTSASPLDQEGALYALGKLEDSGSYPR 253
4 -10.100IDP06029 adaptin N terminal region domain-containing protein [Toxoplasma gondii ME49] EEB01203 [Toxoplasma gondii ME49]  ali follow..  11  1MSLS-PLMASTGPLLDRASAGMRALINIVSKSECQYFEEGHFNAAQVKKELQDASV--VTAMKRLLAAHAGGADVSALLPEVVKAIAVPDLELK------------RLVYLF----------LI----------------------------------------------------YAEGNRDLALLSINSFQKD--------------------------LTDRNQVVRAAALKALASIRLLEVVQLLLKRAAADCSPFVRRTAAQCVVKVFALDQDFEELKSIVLTLLADVEVSVVGAALIAFRELCLRHS... 218
5 -7.500IDP06032 beta-adaptin-like protein, putative [Toxoplasma gondii ME49] EEB01577 [Toxoplasma gondii ME49]  ali follow..  10  1MA---AASPSAPPPPPPTHHVVVPRPPAGPQFFVDQKRGELYELRQVLRSLPTERD--RDALKKLIAYMTVGLDVSRLFADVVMLASTADLVQKKMIYQYLTNYADTN-------------------------------------------------------------------------PSLSLLAINTFQKD--------------------------CNDEDPRLRGLALRSLCSLRLSCMLEYIARKGASDPSPYVRRAAVMGMLKVCKLLQE-DEIRQRLHEALFDDDPQVTINAICALNELEAETG... 228
6 -6.800IDP92583 beta adaptin protein, putative [Toxoplasma gondii ME49] TGME49_040870 [Toxoplasma gondii ME49]  ali follow..  8  1...................................................MTDGNYFQPAKRGELHE------------------------LKEELHSSNKEKKKEAV------------VIAAMTVGKDVSSLFPDV--------------VNCMQTTNMELKKLVYL-----NYAKAQPELAILAINTFRKD--------------------------SLDPNPLIRALAVRTMGCIRLEEITEYLLRRSCKDPDPYVRKTAAICVAKLRPDMVGEEGFIEELTTMLSDSNPVVVANAVAALSEISENSG... 192
7 -5.780IDP92606 gamma-adaptin, putative [Toxoplasma gondii ME49] TGME49_113670 [Toxoplasma gondii ME49]  ali follow..  11  2...........SCKLREFIRNIRAA--KTAADERAVVSKECAEIRTAFKE-RYRHRNVAKVLFISML---------------------------------------------------------------GYPTQFAQLE-------------LKLLASPRFAEKRVGYLGLSCLLDE--QSEVLMLATNSIKND--------------------------LQHPNQYVNGLALTALGNIGTGEMCGAIMT-LLRCSNPFIRKKAALCGVRVVKRVGDCEKLLACLPALLADRNHGVLISACALITALAERDP... 204
8 -5.420IDP92581 splicing factor 3a protein, putative [Toxoplasma gondii ME49] TGME49_021940 [Toxoplasma gondii ME49]  ali follow..  9  7.............GVSLFIQDVRN------APSSSREQARVLQELSKIRQRFAHPK------------------------KPLTGYEKKKCLTKL-------------LYIHLLGYPVDIGHAEA----------------------------ISLLSSPHYSERSAAFLFCSLLLVDSHTASRDLPDLRSL---------------------CCSSIKKELSLQHEDFAALALDCASYISDPDAAAELFP-PSSSASPLIRQKAYSCMLVF-SLLPCEVWASRLGQALLFEQDLSCLLSLVNLIFHAVLQTS... 224
9 -5.280IDP02001 putative type III secretion apparatus [Yersinia pestis CO92] YPO0261 [Yersinia pestis CO92]  ali follow..  12  5.................................................................................................................................................................................................................................................SADCRQLVVEAALAGVNHSLLAEAVNALPLLIPDPQVRLVCEAMLRFGLGDKV-----QARALLATSGEEDA... 74
10 -5.080IDP00470 putative iron-sulfur cluster-binding protein YPO0367 [Yersinia pestis CO92]  ali follow..  8  339.....................................................................................................................................................................................................................................LRNISVALGNAPYLDSIVLALE-TRRGLHPMLDEHIEWAISQQLARRATQAVEVQL------PQKKRLIRAIEKGLPR......... 409
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.