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Query: IDP04466 gene: ansA; L-asparaginase I [Yersinia pestis CO92] YPO2161 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQKKSIYVAYTGGTIGMQRSDNGYIPVSGHLQRQLALMPEFHRPEMPDFTIHEYAPLIDSSDMTPEDWQHIANDIQQNYDLYDGFVILHGTDTMAFTASALSFMLENLAKPVIITGSQIPLAELRSDGQTNLLNALYLAANHPVNEVSLFFNNQLFRGNRTTKAHADGFDAFASPNLSVLLEAGIHIRRQSSVVSPTSNGPLIVHRITPQPIGVVTIYPGISGAVVRNFLLQPVKALILRSYGVGNAPQKAELLDELKNASDRGIVVVNLTQCISGSVNMGGYATGNALAQAGVISGFDMTVEAALTKLHYLLSQSLSPNEIRQLMQQNLRGELTDTQLast
1 -114.000IDP04466 gene: ansA; L-asparaginase I [Yersinia pestis CO92] YPO2161 [Yersinia pestis CO92]  ali  100  1MQKKSIYVAYTGGTIGMQRSDNGYIPVSGHLQRQLALMPEFHRPEMPDFTIHEYAPLIDSSDMTPEDWQHIANDIQQNYDLYDGFVILHGTDTMAFTASALSFMLENLAKPVIITGSQIPLAELRSDGQTNLLNALYLAANHPVNEVSLFFNNQLFRGNRTTKAHADGFDAFASPNLSVLLEAGIHIRRQSSVVSPTSNGPLIVHRITPQPIGVVTIYPGISGAVVRNFLLQPVKALILRSYGVGNAPQKAELLDELKNASDRGIVVVNLTQCISGSVNMGGYATGNALAQAGVISGFDMTVEAALTKLHYLLSQSLSPNEIRQLMQQNLRGELTDTQ 338
2 -84.800IDP04457 gene: ansB; putative L-asparaginase II precursor [Yersinia pestis CO92] YPO1386 [Yersinia pestis CO92]  ali follow..  25  21FALPNITLLATGGTIAGGGDSANYTAGKLGVDALVEAVPAIKDIANIQG---EQVVNIGSQDMNDDVWLTLAKKINKDCTKTDGFVITHGTDTLEETAYFLDLTV-NCDKPVVIVGAMRPATALGADGPLNLYNAVVVASDADSAGVLVAMNDMVFTGRDVVKTNTTSVQTFQSPNTGPLGYIYDGKVNYLHQPAARQLAFDISKLNTLPKVGIIYNYANASDIPAKALIADGYQGIVSAGVGNGNLY--HTVFDTLATAASHGVAVVRSSRVPSGSTTEGAEID---DAKYGFVAAGALNPQKARVLLQLALTQTQKPQEIQKLFHT.......... 344
3 -81.100IDP90646 gene: ansA; L-asparaginase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0029 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  24  4.AKSRIAILGTGGTIAGFIDSTGYAAGAIDIDVLIKAVPQIRDLADISW---EQIANIDSSNMCDEIWLRLAKKIAKLFEGIDGVVITHGTDTMEETAYFLNLTIKS-DKPVVLVGAMRPSTAISADGPKNLYNAVALVVNKEAKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVIKAHTKNAPFKLTSLPKVDILYSYSNDGSGAAKALFEHGTKGIVVAGSGAGSIH--KNQKDVLKELLKKGLKVVVSSRVVAGCV-----AVSDSDEKLGFISAEDLNPQKARVLLMLALTKTSDPKKIQEYFLK.......... 330
4 -79.400IDP02094 putative L-asparaginase [Salmonella typhimurium LT2] STM3598 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  22  23.SLPHIVILATGGTIAGTAANNGYKSGELGVQTLINAVPEMNNIARVD---GEQVANIGSENMTSDIILKLSQKVNALLDDVDGVVITHGTDTLDETAYFLNLTVKS-DKPVVFTAAMRPASAISADGAMNLLEAVTVAADPNARGVMVVLNDRIGSARFVTKTNATTLDTFKAPEEGYLGVIVNGQPQFETRVEKIHTLRDVRNIKKLPNVVIIYGYQDDPEYMYDAAIAHHADGIIYAGTGAGSVS--VRSDAGIKKAEKAGIIVVRASRTGNGVVPLDKGQ--------PGLVSDSLNPAKARVLLMTALTQTRNPELIQSYFST.......... 346
5 -7.800IDP90541 3-dehydroquinate dehydratase [Vibrio cholerae O1 biovar eltor str. N16961] VC0297 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  18  1MTAKSRILVLNGPNLNLLGLREPTHYGSQTLEQIVAILRDQAQKADIELEHLQSNRE------------ELIEAIHQAFGKVDFIIINPA--AFTHTSVALRDALLGVAIPFI................................................................................................................................................................................................................................. 100
6 -7.500IDP02118 gene: sgaE; L-ribulose-5-phosphate 4-epimerase [Salmonella typhimurium LT2] STM4388 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  20......LVTFTWGNVSAIDRERGLVVIKPSGVAYETMKVD-------DMVVVDMDGKVVEGRYRPSSDTATHLALYQRYPSLGGVVHTHSTHATAWAQAGMAIPALGTTHADYFFGEEEVQGEYELNTGKVIIETLGEVEPLHTPGIVVYQHGPFAWGKDAHDA.............................................................................................................................................................................. 179
7 -7.270IDP90771 gene: aroQ; 3-dehydroquinate dehydratase [Yersinia pestis CO92] YPO3660 [Yersinia pestis CO92]  ali follow..  14  1MSDKFHILLLNGPNLNLLGTREPEKYGYTTLAEIVSQLEIQAQGMDVALSHLQSNAE------------ALIDSIHQARGNTDFILINPA--AFTHTSVALRDALLGVQIPFI................................................................................................................................................................................................................................. 100
8 -6.840IDP02836 gene: aroQ; 3-dehydroquinate dehydratase [Bacillus anthracis str. `Ames Ancestor`] GBAA4423 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  2...KKVLLVN-GPNLNRLGVREVNVYGKGTLATLEADMKQEAEAMGVELECFQSNHE------------AIIDRIHEAEDIYEGIILNPG--AFTHYSYAIRDAIASISIPVI................................................................................................................................................................................................................................. 97
9 -6.220IDP91207 3-dehydroquinate dehydratase [Bacteroides thetaiotaomicron VPI-5482] BT_2842 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  21  2....RIQIIN-GPNINLLGKREPSIYGSVTFEDYLAELRKRYADLEIDY-------------FQSNIEGEMIDCIQQVGFEVDGIILNAG--AYTHTSIALQDAIRSVTSPVI................................................................................................................................................................................................................................. 94
10 -5.350IDP95160 uridine diphosphate galacturonate 4-epimerase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] YP_001336140 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]  ali follow..  12  1.....MKFLVTGGFIGFH-----------IAQRLLNEGHNVVGIDNMNDYYDVSLKQARLDRLAYPAFHFQQLDLADR-EGMAKLFATEQFDRVIHLAA--------------QAGVRYSLENPYAYADANLMGYLNICRHTKVKHLVYASSSSVYGLNRKMPFSTEDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFTVYGPW--------GRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVLDVIPQANADWTVESGSPATSSAPYRVYNIGNSSPVELMDYITALEEALGM-----EAQKNMMPIQPGDVLDT. 298
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.