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Query: IDP04558 gene: mxiG; MxiG, component of the Mxi-Spa secretion machinery, contains one transmembrane segment [Shigella flexneri] CAC05811 [Shigella flexneri], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEAKNSNLAPFRLLVKLTNGVGDEFPLYYGNNLIVLGRTIETLEFGNDNFPENIIPVTDSKSDGIIYLTISKDNICQFSDEKGEQIDINSQFNSFEYDGISFHLKNMREDKSRGHILNGMYKNHSVFFFFAVIVVLIIIFSLSLKKDEVKEIAEIIDDKRYGIVNTGQCNYILAETQNDAVWASVALNKTGFTKCRYILVSNKEINRIQQYINQRFPFINLYVLNLVSDKAELLVFLSKERNSSKDTELDKLKNALIVEFPYIKNIKFNYLSDHNARGDAKGIFTKVNVQYKEICENNKVTYSVREELTDEKLELINRLISEHKNIYGDQYIEFSVLLIDDDFKGKSYLNSKDSYVMLNDKHWFFLDKNKLast
1 -120.000IDP04558 gene: mxiG; MxiG, component of the Mxi-Spa secretion machinery, contains one transmembrane segment [Shigella flexneri] CAC05811 [Shigella flexneri]  ali  100  1MSEAKNSNLAPFRLLVKLTNGVGDEFPLYYGNNLIVLGRTIETLEFGNDNFPENIIPVTDSKSDGIIYLTISKDNICQFSDEKGEQIDINSQFNSFEYDGISFHLKNMREDKSRGHILNGMYKNHSVFFFFAVIVVLIIIFSLSLKKDEVKEIAEIIDDKRYGIVNTGQCNYILAETQNDAVWASVALNKTGFTKCRYILVSNKEINRIQQYINQRFPFINLYVLNLVSDKAELLVFLSKERNSSKDTELDKLKNALIVEFPYIKNIKFNYLSDHNARGDAKGIFTKVNVQYKEICENNKVTYSVREELTDEKLELINRLISEHKNIYGDQYIEFSVLLIDDDFKGKSYLNSKDSYVMLNDKHWFFLDKNK 371
2 -27.100IDP04699 gene: yscD; virulence protein [Yersinia pestis CO92] YPCD1.53 [Yersinia pestis CO92]  ali follow..  12  2............SWVCRFYQGKGVEVELPHGRCVIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPTQRKEPTDRLPRSRLGIGLGVLSLLLLLTFLGLLGHGLWREYRRLLATAAYKDVVLTSPKKEGEPWLLYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQR----LGYHGIEVSLAPQAGWLQLNGE--VSEEIQKQKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDQAISLGKVPYVVLDNHQRYPE.... 382
3 -25.000IDP91490 putative type III export protein PscD [Vibrio parahaemolyticus RIMD 2210633] VP1695 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  11  2...........QQWKIRILSGVGVEVTLPEGALVLGSDDFIADLVLSDAGVEANHFTLVCDSESVMLAVGESGIELERHAVISVGVVKFALGYVEDELIVTNVTDAQTKQDAPVVTAQSTSWKRTALIAVLCSAIPSAIF-EVVAEAEPIVLVRNILNELGVEWNATAHQAVLYVEDRTQKLQLLGRIDVLGINYKSDLRTMEEIRRGVRFILRNL--GYHQVKVENGDETGTLLL----TGYIDDASKWNQVEQILERDVPGLVAWKVELQRAGAYMDTLKELLTNAELLKKVQLVTSGDRIEVRGELDDIETTRFYGVTRDFREQYGEKPIPKVSKGTDIDFPFRSVNFGQVPYVILTDNVRYMV.... 391
4 -5.750IDP05040 heat shock protein, Hsp20 family [Bacillus anthracis str. Ames] BA_2262 [Bacillus anthracis str. Ames]  ali follow..  41.........................................................................................................................................................................................................VDVHEQSDKYTVKADLPGFQKENIQVEFEQDVLTIQATNHNEVEEKNENGTYIRKERSIGSVTRRFSFKQVEEENVRANYKDGVLTIELPKLKEEKNSKTTINIE................................................................. 145
5 -5.410IDP04585 30S ribosomal protein S3 [Bacillus anthracis str. Sterne] BAS0116 [Bacillus anthracis str. Sterne]  ali follow..  14  17.....................................................................................................................................................................................DWESRWFAEKDYATLLH------EDIKIREYINVRLKDSAVAKVEIERAANRVNVTIHTAKPGMGGTEVEALRKALNQLTGKRVHINILEVKNAKLVGENIARQLENRVSFRRAAGAKGIKTQVSGRLGGADIARLRADIDEADTTYGKLGVKVWIYRGE.............................. 205
6 -4.950IDP01982 hypothetical protein FTT0975 [Francisella tularensis subsp. tularensis SCHU S4] FTT0975 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  10  1........................................................................................................................MKKSIIPITLISIFATTSLAIACDNDYLDHNTIK--YSTQAETTVKSDSILVQVT---------------------GYATTTLEKQNDVEKQISDNVNNIKVKNIEQTTSNSGTINITVKLQARISQSDLNNLQRAF-----------------ENQNKSSGMRLVVDVLDYNPPARDIQ---VAKQKLMIKLFNDTKDYLANFNKQTNSNYTIQSIQYIDV............................. 184
7 -4.910IDP90619 gene: rpsC; 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1701c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  35............................................................................................................................................................................................................EDYKIRAFLKRKLYYAGISQILVERTAKKLRVTVVAARPGIKGSDVDNLRKELQDLIGKDVNINIKEERSAQLAAESVATQLEKRIAFRRAAGAKGIKVSVSGRLGGAEMARTEWYLEEARTTYGNIGVKVWIFKGE.............................. 206
8 -4.570IDP04069 30S ribosomal protein S6 [Bacillus anthracis str. Sterne] BAS5327 [Bacillus anthracis str. Sterne]  ali follow..  6............................................................................................................................................................................................................................................................................................................IMYIIRPGVEEEAQKALVERFAGVTKEWGKRRLAYEINDLRE............................. 57
9 -4.510IDP05128 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_5530 [Bacillus anthracis str. Ames]  ali follow..  11..............................................................................................................................VALSVVLFLVGYREMKPISDEQKMESMIASLEKNDAKVEKWS-RETKTISNIHTFQKLLNDVKEKANIQKWELEQSPDGYKATSYKKFSSYEERVVVTWSKENTKENTFIIFEVSGAKWDPKYIQKTNKIFSEKPIIYTCVQLNDKIEGVLQNKTNQVLKDLSAR---------------EQIEERAFVSVSAYNKKWDDA-NREKINVQIAIRST---------DNKDTIVVG........... 228
10 -4.470IDP02774 hypothetical protein FTT0392c [Francisella tularensis subsp. tularensis SCHU S4] FTT0392c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  10  1.......................................................................................................................................................................................................MQIKQAQQTIAELFKDIIHPRLASFIALSEEVGELANEIMKKEIYEETNDNQKIKAELTDVFVSL--LELANVYNIDLETEFIEKIQTLEPRVQQWNKAKALLKAKRTKLD............................................................. 109

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.