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Query: IDP04566 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1876 [Clostridium perfringens ATCC 13124], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTKKKNKLFIVILSILILILACFFGVKAVYKSYFAPKVSVTSINSNIELNDWNLIKKFLPNNINLSLKEINVSSTTEFSDSELTDLFILALREEPDAIKDLTGLKVDIENDDINIYVDINYKNIPFQGKLTFTAQSKDGKGIFHYKEGKVGFIDISKDTIFKNLQDNSILSFDKTNGDIILSFKDIIKYLQIKSIKVENNKIVIVFNGTIPLLSSIFPNLNLast
1 -79.200IDP04566 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1876 [Clostridium perfringens ATCC 13124]  ali  100  1MTKKKNKLFIVILSILILILACFFGVKAVYKSYFAPKVSVTSINSNIELNDWNLIKKFLPNNINLSLKEINVSSTTEFSDSELTDLFILALREEPDAIKDLTGLKVDIENDDINIYVDINYKNIPFQGKLTFTAQSKDGKGIFHYKEGKVGFIDISKDTIFKNLQDNSILSFDKTNGDIILSFKDIIKYLQIKSIKVENNKIVIVFNGTIPLLSSIFPNLN 221
2 -8.240IDP05588 putative lipoprotein [Bacillus anthracis str. Ames] BA_2883 [Bacillus anthracis str. Ames]  ali follow..  10  1MKVYVK---IALLCLTFTCIFALAACKGTDEKKETNPTSENSKNEQNTSSEGKKEPEVKSNTDSNSKDIVINQKSINHVKNLFELAKEGKVPNVPFAAHTGDIEEIEKAWGKADKTEQAGNGMYATFTNKNVSFGFNKGSQVFDVRSYHAELKSITLQEIEKALGKPNSVKGNGEDKQFELKFIIPKSTGKVNHISVFSPEDSIN................ 210
3 -7.920IDP06529 gene: acm; collagen-binding MSCRAMM Acm (Fms8) [Enterococcus faecium DO] AFK59905 [Enterococcus faecium DO]  ali follow..  16  1MKK---------CRNIILSMLFIITNITSLIPVHVYADAGRDISSNVT--------------------------SLTVDPTNITD------------------------GGNIKVKFSFDEKK-----------NIQPGDYL---------WINWPSE-------------GNIRGEGFQKEIPLMIENKNVGTLTVRKDSAQVVFNENIKNLDSVEGWGQ 130
4 -7.480IDP05317 hypothetical protein lmo0638 [Listeria monocytogenes EGD-e] lmo0638 [Listeria monocytogenes EGD-e]  ali follow..  6  1MKNKTTK----IICGGLATVLLSSSLVLPTTSLASTSKQKVQDYQQEETFSDSPLTELDNLIAEKYITFDSPLKQYKVNPSIGSEMTTEKIEAVNKQ---VAETNNLLTLATNDSSTNVIA.................................................................................................... 115
5 -7.300IDP05275 hypothetical protein lmo2686 [Listeria monocytogenes EGD-e] lmo2686 [Listeria monocytogenes EGD-e]  ali follow..  11  1MKE------------FLFFAVFTFIMTIGVGVINASASEIENPDNIQEAEVETFDLNGNIAQEKEIVLEDGTEGTLGVMPIIDERPLLKGTYSLANGT---STWKIYWYSGVYNCSFNAKINVSKGKGKIT---SAYNPWYQFYSPGLDVKKSKLSKTSSGSSASYVFDCKNKISNWNVTL------------KASVSGKKLTTSFK.............. 177
6 -7.170IDP05014 putative lipoprotein [Bacillus anthracis str. Ames] BA_1972 [Bacillus anthracis str. Ames]  ali follow..  9  1MKK------------MIAICLLTTMSFSTLVGCDIKGSNAVQESKIKKATYKDFTYDV-----------NPETFTLTVEHDGVKEQASQPLPKMKVSNVKKEKDRTSWEYPDQKVKVNVEKKKDYLNIEVESTPKVQAENYTLPLWE----GKQIPSN-FAESFSMKFFALNGSKYSIVYIANNMFNNELKFQS----DPKIGFEFIHEFPSIN....... 203
7 -6.930IDP05417 conserved domain protein [Bacillus anthracis str. Ames] BA_4788 [Bacillus anthracis str. Ames]  ali follow..  14  1MFKQ--------FKMIIAVFAVLFTFIATLGLQDAKAATKLADGKKGDKDESSRMNRYFESPATLTVKNGKQYVSFKVKDSTSIKSFQTVLSENKKDNTRVVEFEVADLSKKLNGKVKINIPIINYNASYDIRFVFDGNSI................................................................................ 151
8 -6.900IDP05056 gene: motB; chemotaxis protein [Clostridium difficile 630] CD0257 [Peptoclostridium difficile 630]  ali follow..  13  1MARKKNK-WLATYADTITLILTFFVLLYATSVVD--------------------MEKFKNIADALKGQFSGTSIFSTGSSTSEKSPIDSVLVDKNDKSNLEQDLKDKVNNSNLQNSVTVKDDSRGILLELDDSILFDSGISELKVDSKAT--------------------------NKVYDMIKMMKNKIVIENVPVKSSTHESNWDLSSSRAVSVVRYF. 187
9 -6.860IDP04197 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2510 [Clostridium perfringens ATCC 13124]  ali follow..  11  1MKKL--------LVPVLVIIIFALLFVGCTNSSNSSSDSSVEIINSNQQNSNSNNNNSSNNDTKKSDSNNASHKD-KKLDNKAEKLLKDIKEKAVKGEIIDYDFKLGDSIYDV-----IDKLGKPSSEN-NLSFGCNKGDQIFEIRSLNKDLKSLDLNNVENFFGKPDYTVTTKSKEKIIGYKITKDFKILF-VFNTSTYKLDYSVLYPSITHNSM..... 229
10 -6.810IDP05483 putative lipoprotein [Bacillus anthracis str. Ames] BA_3005 [Bacillus anthracis str. Ames]  ali follow..  10  1MRR---------MLLIIISAIAAFALAAC-----TGNKVDESTSKNFISKAEEIVSLLNEAKYKEVHEKFDSKMTAALSEEKMKDLTPII--EKAGTFEKIEKQSIEEKDGLYTVILVAKYSKEQRTFIITYN---DKEEIA............................................................................... 123
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.