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Query: IDP04699 gene: yscD; virulence protein [Yersinia pestis CO92] YPCD1.53 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPTQRKEPTDRLPRSRLGIGLGVLSLLLLLTFLGLLGHGLWREYNQDGQLVEQEVRRLLATAAYKDVVLTSPKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIEVSLAPQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLNGGKPRLast
1 -109.000IDP04699 gene: yscD; virulence protein [Yersinia pestis CO92] YPCD1.53 [Yersinia pestis CO92]  ali  100  1MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPTQRKEPTDRLPRSRLGIGLGVLSLLLLLTFLGLLGHGLWREYNQDGQLVEQEVRRLLATAAYKDVVLTSPKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIEVSLAPQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLNGGKPR 419
2 -93.900IDP91490 putative type III export protein PscD [Vibrio parahaemolyticus RIMD 2210633] VP1695 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  26  1MQWKIRILSGVHSGVEVTLPEGALVLGSDDFIADLVLSDAGVEANHFTLVCDSESVMLRGCQDVNGENRAVGESGIELERHAVISVGVVKFALGYVEDELIVTNVTDAQTKQDAPVVTAQSTSWKRTALIAVLCSAIPSAIFAGMWYSQANGNDSEVVAEAEPIVLVRNILNERVEWNATAHQAVLEGYVEDRTQKLQLLGRIDVLGINYKSDLRTMEEIRRGVRFILRNLGYHQVKVENGDETGTLLLTGYIDDASKWNQVEQILERDVPGLVAWKVELQRAGAYMDTLKELLTNAELLKKVQLVTSGDRIEVRGELDDIETTRFYGVTRDFREQYGEKPYLVLKSIPKVSKGTDIDFPFRSVNFGQVPYVILTDNVRYMVGARTPQGYRISSVTPAGIELVKGGRVITIELGYEGEK 428
3 -27.100IDP04558 gene: mxiG; MxiG, component of the Mxi-Spa secretion machinery, contains one transmembrane segment [Shigella flexneri] CAC05811 [Shigella flexneri]  ali follow..  12  13.RLLVKLTNGV--GDEFPLYYGNNL---------IVLGRTIETLEFGNDNFPENIIPVTDSKSDGII--YLTISKDNICQFSDEKGEQIDINSQFNSFEYDGISFHLKNMREDKSRGHILNGMYKNHSVFFFFAVIVVLIIIFSLSLKK-----------DEVKEIAEIIDDKRYGIVNTGQCNYI--LAETQNDAVWASVALNKTGFTKCRYILVSNKEINRIQQYINQINLYVLNLVSDKAELLVFLSKESSKDTELDKLKNALIVEFPYIKNIKFNYLSDHNARGDAKGIFTKVNVQYKEICENNKVTYSVREELTDEKLELINRLISEHKNIYGDQYIEFSVLLIDDDFKG------KSYLNSKDSYVMLNDKHWFFL..................................... 367
4 -20.700IDP92663 hypothetical protein BB0811 [Bordetella bronchiseptica RB50] NP_887360 [Bordetella bronchiseptica RB50]  ali follow..  15  1MMLTLIVRNPGASARRADFHAPGGTLGRDA-ENCLALPAAPLCRVQAALRADAQGWRLHNLSAAVHINDAALAPGAVIQAGDTLRVGAHTLEVSGPDAPDARPAALPEAAADTPADAPRRGQAGAGAAEDIFSGLFGPGTLPVGGIADAATHPFDLDSAQAR................................................................................................................................................................................................................................................................. 169
5 -15.800IDP00141 gene: mshK; MSHA biogenesis protein MshK VC0401 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  30........................................................................................................................................................................................................................................................................................................................................................SPAKPELQKPSYPVPTLQSIVCAEGR-YAIIEQRVVAQGDVV-NGYRVATIHPDQVKLTRAGKEWRLALFTLDIK 104
6 -12.600IDP95173 pullulanase-specific type II secretion system component B [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917878 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  16  116.......................................................................................................................................................................................................................................................................................................................................................................TLPPLRYSAHVYSIVLNGKAWTEGDSPLPNLVVEQIQQDVTIFSFNGTTFTLA....... 175
7 -11.900IDP95139 hypothetical protein KP1_5093 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002921605 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  9  25.........................................................................................................................................................................................................................................................................................................................................................PVEDPCRTAQLSQWRYGGAVGDDAGFLQDGNGKRVRMDEQLLTGWRVSRLTAGELDIVTSSGAWRWQREGKQ.. 105
8 -10.900IDP04716 general secretion pathway protein C [Yersinia pestis CO92] YPO0817 [Yersinia pestis CO92]  ali follow..  15  88.....................................................................................................................................................................................................................................................................................................................................................KIEMNDVLFYSPEYIGEIKLVGVIEHSAP-ILEVKGKQHLTRENINYDIVIVKIFTDRVIIKRNGKYYSLIIN..... 167
9 -10.500IDP93946 general secretion pathway protein C [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007723 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  15  105.........................................................................................................................................................................................................................................................................................................................................................DPLLFHAPPSNLAARVVGILSSSIH-IIEQNKYQYSQGEKMPEN-VVIKIFDDRVIINHQGYYESLLLD..... 180
10 -9.610IDP95153 putative type IV pilus protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917552 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  9  51.............................................................................................................................................................................................VSPSPQQPPLEQLTA-----LSIPPGFHPTVGEALQYLLRGSGWS-----------------LCLADARRAQLYGL---------------------LPLSQYHTGPLRLKAALQL--------LASPAWRMTTDENRREVCTSDRSLPPTVAYRHPVSLRPLGPLTAPFFFAGT--GDIRLAVLHQVVWLRRGEQW-HGWRLERFDERRAVFRHGKRQLTLKV...... 233
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35