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Query: IDP05047 gene: ctaC; cytochrome c oxidase, subunit II [Bacillus anthracis str. Ames] BA_4154 [Bacillus anthracis str. Ames], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKQWRLLSFVSLLALLLGGCGKAFQSTLIPQGEVAKMQYDLLLLASAIMVGVVLVVTIIFLYVIVRFRQKKGQEDYIPEQVEGNHKLEIIWTVIPIILLLILAVPTVTYTFKLADVSAMEKKNIDKDTIVVDVTANLYWWEFSYKSEKIVTSQDLVIPTGKKVYLNLKGADIKHSFWVPSLAGKMDTNTDNVNKMWLKADKSGTYNGFCTEFCGPSHSLMQFKVKALDESEYKKWLADMKKIDGKKEVASTKAQEGQEIFNKSCIGCHAVGSNDSRPPSARIAPNLANFADRDTVAGIAENNEENLKKWLKDPENMKPGNKMNGKYGNLTDDQIDALNAYLQTLKVEKLast
1 -124.000IDP05047 gene: ctaC; cytochrome c oxidase, subunit II [Bacillus anthracis str. Ames] BA_4154 [Bacillus anthracis str. Ames]  ali  100  1MKKQWRLLSFVSLLALLLGGCGKAFQSTLIPQGEVAKMQYDLLLLASAIMVGVVLVVTIIFLYVIVRFRQKKGQEDYIPEQVEGNHKLEIIWTVIPIILLLILAVPTVTYTFKLADVSAMEKKNIDKDTIVVDVTANLYWWEFSYKSEKIVTSQDLVIPTGKKVYLNLKGADIKHSFWVPSLAGKMDTNTDNVNKMWLKADKSGTYNGFCTEFCGPSHSLMQFKVKALDESEYKKWLADMKKIDGKKEVASTKAQEGQEIFNKSCIGCHAVGSNDSRPPSARIAPNLANFADRDTVAGIAENNEENLKKWLKDPENMKPGNKMNGKYGNLTDDQIDALNAYLQTLKVEK 349
2 -93.700IDP02304 gene: qoxA; quinol oxidase, subunit II [Bacillus anthracis str. `Ames Ancestor`] GBAA0703 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  30  11......ASLLPLSLLLFLGGCDKK-LAVLNPQGPVAKAQYDLIVWSFLLMSLIIAIVFILFTVILIRYREKPENMDYEPPEQHGNTLLEIIWTLVPVIIVIALSIPTVKATYAS---EEVPKESKHIKPVEIYVTSANWKWLFSYPEEKIETVNYLNIPAGVPIQFKLTSVGPMNAFWVPELGGMKYTMDGMIMDLYLQADKPGSYLGRSANFSGEGFTHMEFEVEAKTKEKYDKWVKEVQQTAPKLTEDKYNEIVKPGVVGRMTFSSHHLSYVDPKSL---EYCDYNYYKNKK....................................................... 291
3 -22.500IDP06152 gene: fixP; cytochrome oxidase (CBB3-type) [Helicobacter pylori J99] NP_222856 [Helicobacter pylori J99]  ali follow..  13  5....................................................................................NDHINVFGLIAALVILVLTIYESSS---------LIKEMRDSKSQGELMENGHLI--------DGIGEFAN--VPVGWIASFMCV---IVWAFWVKAHNQKFEAKWKHLGQKELVDMGQGIFLVHCSQ-C---HGMPAIEMDEKDAKAIASYVMAELSSVKKTKNPQLIDKGKELFESMGCAGCHGNDGKGLQENQVFAADLTTY------------GTESFLRNILTHGKKGNIGRMPSFKYKNFSDLQVKALVEFIKSLKPLE 291
4 -20.300IDP05418 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_1561 [Bacillus anthracis str. Ames]  ali follow..  17  1.....................................................................................MSINKWLFRFIGFLVMLVVITTLNSLNVFASVNDLAQPIASAKVIEVELNDDYF------------NPNVITIPINESTTLLLKNKGSEHTFTIKKLGIDVVVESGKEKNITVKPKSAGTYELICRYHLLKG---MEGKVIV.......................................................................................................................... 128
5 -18.200IDP91338 cytochrome c553 [Vibrio vulnificus CMCP6] VV2_0132 [Vibrio vulnificus CMCP6]  ali follow..  21  42..............................................................................................................................................................................HG--IPTIAGI----PEFNLSDQMLRYLEGRPANTVQHVSGDISGDMATIVRSLTEEEIEAYYADMEFVRAKQPFDQALANQGKAIHLKSCESCHADGGSDPLDEASILAGQ----------------QKGYLITTLTQQGKRSADKKMDKAIKALSQEERQALVEYYASFQ... 207
6 -17.800IDP05379 gene: cccB; cytochrome c-551 [Bacillus anthracis str. Ames] BA_5417 [Bacillus anthracis str. Ames]  ali follow..  21  20.............................................................................................................................................................................................................................................ACGNKEESKPSKQSASTDSAEQIYQKSCIGCHAKDLSGATG------PDLRKVGQK--------YDAADIEKIIEKGRG-----SMSPG--IIQGEDAKKVAEWLAEHK... 107
7 -10.200IDP02110 putative cytochrome c peroxidase [Salmonella typhimurium LT2] STM3820 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  238....................................................................................................................................TVFNSVFNIEQFWDGRAATLQEQAGGPPLNPIEMASKSWDEI----ISKLD-KDPVLKKDFQAVYPQGFTGENITDAIAEF----------KTLITPDSAFDKWLRGDENA------TAQQKHGYQLFKENKCATCHG-ITAADIGRMNVTKEVRDKLRQKVPGLRNVALTAPYFHRDVPTLDGAVKLMLRYQVGTDLPQNDIDDIVAFLESLTGVY 457
8 -7.750IDP93836 cytochrome c-type protein NrfB [Yersinia enterocolitica subsp. palearctica Y11] YP_006003980 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  11  55..............................................................................................................................................................................HK----------EQKDELHGKHAGAINPNTQLAVTCTN-CHGKAAILHRNGIKDVMRFNSDMLNADKAMFSVSQQNSVCMSHDVHMLKLSCVSCHQLHPKTDP........................................................................ 159
9 -6.630IDP90095 ZZZ_0011 [Escherichia coli 042]  ali follow..  8  1LMTIKCLLLAVMVCPFFITACSDKYSE------------------------------------------QDRVQAINNADAPFGAGLLTF----------------------QISSDTQLNSLNEISNSCALLFLQAS-------DKNTLQDIMNNPVLIKQFFIGTGKVDGILKV--------KYVAMPGQEITLHIDRNEGTKYVGVVAGYYPFPGKQHMLLLDIPVDVVEEGWWNKSLHASLLPLSKKISMGKESISMK....................................................................................... 184
10 -6.580IDP05038 multicopper oxidase family protein [Bacillus anthracis str. Ames] BA_1902 [Bacillus anthracis str. Ames]  ali follow..  19  418................................................................................................................................DLNTQMNGNEMVYTIN--GKVFPDIDPVQVKKDDLVKVKLVNRSKMHFFQVLSKGGKKDTLPGEEYEVAFVADNPGEWMFHC-----LHHAGMVTEVKYKDYK...................................................................................................................... 537
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.